Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0036s0110 Marchantia polymorpha HOM05D003493 ORTHO05D003980 0.0e+00 1768.1 913 100.0
AagrBONN_evm.TU.Sc2ySwM_368.2475 Anthoceros agrestis HOM05D003493 ORTHO05D003980 5.7e-130 469.5 883 36.5
Pp3c1_25660 Physcomitrium patens HOM05D003493 ORTHO05D003980 8.0e-108 396.0 959 30.9
Pp3c14_11980 Physcomitrium patens HOM05D003493 ORTHO05D003980 2.8e-105 387.5 942 31.7
Pp3c5_12280 Physcomitrium patens HOM05D003493 ORTHO05D003980 1.9e-93 348.2 961 29.6
SMO361G0167 Selaginella moellendorffii HOM05D003493 ORTHO05D003980 4.7e-92 343.6 855 30.8
Sabra17G0126700 Salix brachista HOM05D003493 ORTHO05D003980 1.8e-91 341.7 873 31.7
Aqoxy3G04358 Aquilegia oxysepala HOM05D003493 ORTHO05D003980 8.3e-89 332.8 848 29.6
TAR622G0755 Trochodendron aralioides HOM05D003493 ORTHO05D003980 5.4e-88 330.1 863 31.9
Pp3c17_10430 Physcomitrium patens HOM05D003493 ORTHO05D003980 7.8e-87 326.2 765 32.4
Atru.chr9.57 Acer truncatum HOM05D003493 ORTHO05D003980 2.5e-85 321.2 855 29.8
CANSAT80G2441 Cannabis sativa HOM05D003493 ORTHO05D003980 3.3e-85 320.9 842 30.0
Prupe.5G246400 Prunus persica HOM05D003493 ORTHO05D003980 2.1e-84 318.2 857 31.0
FvH4_5g18670 Fragaria vesca HOM05D003493 ORTHO05D003980 3.6e-84 317.4 844 30.3
ClCG01G014650 Citrullus lanatus HOM05D003493 ORTHO05D003980 1.1e-83 315.8 862 30.7
FAN04G2252 Fragaria x ananassa HOM05D003493 ORTHO05D003980 1.4e-83 315.5 844 30.5
ATR0124G004 Amborella trichopoda HOM05D003493 ORTHO05D003980 1.8e-83 315.1 853 29.4
FAN18G2761 Fragaria x ananassa HOM05D003493 ORTHO05D003980 1.8e-83 315.1 843 30.0
AL2G32970 Arabidopsis lyrata HOM05D003493 ORTHO05D003980 2.3e-83 314.7 851 31.3
Zm00001eb190790 Zea mays HOM05D003493 ORTHO05D003980 4.0e-83 313.9 759 31.2
Pp3c6_14220 Physcomitrium patens HOM05D003493 ORTHO05D003980 1.5e-82 312.0 723 31.3
Actinidia06838 Actinidia chinensis HOM05D003493 ORTHO05D003980 2.6e-82 311.2 668 33.1
Gohir.A06G181400 Gossypium hirsutum HOM05D003493 ORTHO05D003980 2.6e-82 311.2 855 29.2
CSS0005530 Camellia sinensis var. sinensis HOM05D003493 ORTHO05D003980 4.4e-82 310.5 856 28.9
FAN08G2984 Fragaria x ananassa HOM05D003493 ORTHO05D003980 4.4e-82 310.5 853 30.2
Potri.017G155000 Populus trichocarpa HOM05D003493 ORTHO05D003980 4.4e-82 310.5 857 29.2
Cc04_g13620 Coffea canephora HOM05D003493 ORTHO05D003980 7.5e-82 309.7 720 32.1
Sp1g15900 Schrenkiella parvula HOM05D003493 ORTHO05D003980 7.5e-82 309.7 859 30.2
Sed0011518 Sechium edule HOM05D003493 ORTHO05D003980 7.5e-82 309.7 876 29.8
AT1G73200 Arabidopsis thaliana HOM05D003493 ORTHO05D003980 9.8e-82 309.3 845 30.3
Manes.01G159600 Manihot esculenta HOM05D003493 ORTHO05D003980 9.8e-82 309.3 858 30.7
MELO3C002186.2 Cucumis melo HOM05D003493 ORTHO05D003980 1.3e-81 308.9 861 30.5
CsaV3_1G007680 Cucumis sativus L. HOM05D003493 ORTHO05D003980 1.3e-81 308.9 750 31.5
RcHm_v2.0_Chr7g0176841 Rosa chinensis HOM05D003493 ORTHO05D003980 1.7e-81 308.5 860 29.4
TWI81G0199 Tripterygium wilfordii HOM05D003493 ORTHO05D003980 2.2e-81 308.1 764 33.0
Cfa017818 Carpinus fangiana HOM05D003493 ORTHO05D003980 2.9e-81 307.8 855 29.9
Gohir.D06G188200 Gossypium hirsutum HOM05D003493 ORTHO05D003980 6.4e-81 306.6 851 28.9
Gorai.010G220600 Gossypium raimondii HOM05D003493 ORTHO05D003980 6.4e-81 306.6 851 28.9
Duzib235G1490 Durio zibethinus HOM05D003493 ORTHO05D003980 1.1e-80 305.8 841 29.3
Thecc.06G006900 Theobroma cacao HOM05D003493 ORTHO05D003980 2.4e-80 304.7 842 30.3
PGR083G2526 Punica granatum HOM05D003493 ORTHO05D003980 3.2e-80 304.3 661 31.6
TPR.G8860 Trifolium pratense HOM05D003493 ORTHO05D003980 3.2e-80 304.3 769 29.5
Glyma.09G160200 Glycine max HOM05D003493 ORTHO05D003980 4.1e-80 303.9 861 28.9
Gorai.009G116400 Gossypium raimondii HOM05D003493 ORTHO05D003980 4.1e-80 303.9 673 31.2
Glyma.10G174700 Glycine max HOM05D003493 ORTHO05D003980 5.4e-80 303.5 846 28.7
Sopen03g029860 Solanum pennellii HOM05D003493 ORTHO05D003980 9.2e-80 302.8 778 31.5
Haze_18391 Corylus avellana HOM05D003493 ORTHO05D003980 1.2e-79 302.4 865 30.1
Lj2g0009881 Lotus japonicus HOM05D003493 ORTHO05D003980 1.6e-79 302.0 683 30.7
Gohir.D05G112200 Gossypium hirsutum HOM05D003493 ORTHO05D003980 2.1e-79 301.6 581 32.7
Manes.02G118200 Manihot esculenta HOM05D003493 ORTHO05D003980 2.1e-79 301.6 859 30.0
Phvul.004G135600 Phaseolus vulgaris HOM05D003493 ORTHO05D003980 2.1e-79 301.6 673 30.9
Gohir.A05G111700 Gossypium hirsutum HOM05D003493 ORTHO05D003980 2.7e-79 301.2 664 31.3
Hma1.2p1_0807F.1_g221460 Hydrangea macrophylla HOM05D003493 ORTHO05D003980 2.7e-79 301.2 887 29.7
Lalb_Chr14g0370061 Lupinus albus HOM05D003493 ORTHO05D003980 4.6e-79 300.4 856 28.7
MBI06_g37980_MAGBIO Magnolia biondii HOM05D003493 ORTHO05D003980 7.8e-79 299.7 854 28.0
Carub.0001s1755 Capsella rubella HOM05D003493 ORTHO05D003980 1.7e-78 298.5 862 30.0
Glyma.16G209600 Glycine max HOM05D003493 ORTHO05D003980 2.3e-78 298.1 779 30.0
GSVIVG01024229001 Vitis vinifera HOM05D003493 ORTHO05D003980 2.3e-78 298.1 852 29.5
CARHR066210 Cardamine hirsuta HOM05D003493 ORTHO05D003980 3.9e-78 297.4 848 29.6
SalBow5G1620 Salvia bowleyana HOM05D003493 ORTHO05D003980 3.9e-78 297.4 856 27.7
Duzib192G0928 Durio zibethinus HOM05D003493 ORTHO05D003980 5.1e-78 297.0 834 29.5
TWI36G1567 Tripterygium wilfordii HOM05D003493 ORTHO05D003980 5.1e-78 297.0 801 31.7
Eucgr.H00671 Eucalyptus grandis HOM05D003493 ORTHO05D003980 6.6e-78 296.6 871 29.5
arahy.Tifrunner.gnm1.ann1.ZVJ3VC Arachis hypogaea HOM05D003493 ORTHO05D003980 1.1e-77 295.8 848 30.2
CARHR018430 Cardamine hirsuta HOM05D003493 ORTHO05D003980 2.5e-77 294.7 862 30.3
Nitab4.5_0000854g0120 Nicotiana tabacum HOM05D003493 ORTHO05D003980 2.5e-77 294.7 799 29.7
MD14G1000100 Malus domestica HOM05D003493 ORTHO05D003980 3.3e-77 294.3 879 30.4
Psat6g054360 Pisum sativum HOM05D003493 ORTHO05D003980 3.3e-77 294.3 752 29.9
Carub.0002s1999 Capsella rubella HOM05D003493 ORTHO05D003980 4.3e-77 293.9 851 29.3
Lj5A169T97 Lonicera japonica HOM05D003493 ORTHO05D003980 4.3e-77 293.9 740 30.5
BcaC07g41354 Brassica carinata HOM05D003493 ORTHO05D003980 5.6e-77 293.5 864 30.0
Lj5g0000329 Lotus japonicus HOM05D003493 ORTHO05D003980 5.6e-77 293.5 769 30.6
Lalb_Chr21g0311711 Lupinus albus HOM05D003493 ORTHO05D003980 5.6e-77 293.5 732 29.2
C05p16200 Brassica napus HOM05D003493 ORTHO05D003980 9.5e-77 292.7 851 28.9
A02p18540 Brassica napus HOM05D003493 ORTHO05D003980 3.6e-76 290.8 682 30.9
PSO063G3260 Papaver somniferum HOM05D003493 ORTHO05D003980 3.6e-76 290.8 855 28.4
Aa31LG4G3480 Aethionema arabicum HOM05D003493 ORTHO05D003980 4.7e-76 290.4 739 30.9
Thhalv10006829m.g Eutrema salsugineum HOM05D003493 ORTHO05D003980 4.7e-76 290.4 864 29.3
Solyc03g019770.4 Solanum lycopersicum HOM05D003493 ORTHO05D003980 6.2e-76 290.0 776 31.1
PGSC0003DMG400015207 Solanum tuberosum HOM05D003493 ORTHO05D003980 6.2e-76 290.0 725 31.7
BraA02t06893Z Brassica rapa HOM05D003493 ORTHO05D003980 8.1e-76 289.7 692 31.2
THA.LOC104812198 Tarenaya hassleriana HOM05D003493 ORTHO05D003980 8.1e-76 289.7 855 28.7
Peaxi162Scf00643g00431 Petunia axillaris HOM05D003493 ORTHO05D003980 1.1e-75 289.3 808 30.1
AL1G30180 Arabidopsis lyrata HOM05D003493 ORTHO05D003980 1.4e-75 288.9 870 29.2
Solyc06g072110.4 Solanum lycopersicum HOM05D003493 ORTHO05D003980 1.4e-75 288.9 786 29.8
PSO782G2561 Papaver somniferum HOM05D003493 ORTHO05D003980 1.8e-75 288.5 850 28.5
BolC5t30322H Brassica oleracea HOM05D003493 ORTHO05D003980 2.3e-75 288.1 865 28.6
BraA06t24529Z Brassica rapa HOM05D003493 ORTHO05D003980 4.0e-75 287.3 869 28.8
CiPaw.16G076700 Carya illinoinensis HOM05D003493 ORTHO05D003980 4.0e-75 287.3 776 30.4
VMungo0464G0665 Vigna mungo HOM05D003493 ORTHO05D003980 4.0e-75 287.3 767 29.1
AT1G17820 Arabidopsis thaliana HOM05D003493 ORTHO05D003980 1.2e-74 285.8 857 28.9
Lsat_1_v5_gn_0_10721 Lactuca sativa HOM05D003493 ORTHO05D003980 1.5e-74 285.4 840 29.0
Sp5g28170 Schrenkiella parvula HOM05D003493 ORTHO05D003980 1.5e-74 285.4 854 28.8
A06p13880 Brassica napus HOM05D003493 ORTHO05D003980 3.4e-74 284.3 863 28.2
Lalb_Chr06g0168711 Lupinus albus HOM05D003493 ORTHO05D003980 3.4e-74 284.3 864 29.6
Nitab4.5_0004170g0020 Nicotiana tabacum HOM05D003493 ORTHO05D003980 3.4e-74 284.3 764 31.0
VMungo0720G0805 Vigna mungo HOM05D003493 ORTHO05D003980 3.4e-74 284.3 754 29.7
BcaB07g34006 Brassica carinata HOM05D003493 ORTHO05D003980 5.8e-74 283.5 635 31.8
Sc12g0007780 Simmondsia chinensis HOM05D003493 ORTHO05D003980 5.8e-74 283.5 854 27.5
Sopen06g028400 Solanum pennellii HOM05D003493 ORTHO05D003980 7.5e-74 283.1 782 29.2
C02p30730 Brassica napus HOM05D003493 ORTHO05D003980 1.7e-73 282.0 850 28.8
QL10p035454 Quercus lobata HOM05D003493 ORTHO05D003980 1.7e-73 282.0 639 33.2
Migut.O00291 Erythranthe guttata HOM05D003493 ORTHO05D003980 2.2e-73 281.6 846 28.7
HanXRQChr15g0492171 Helianthus annuus HOM05D003493 ORTHO05D003980 6.4e-73 280.0 852 28.8
MSTRG.23219 Avicennia marina HOM05D003493 ORTHO05D003980 8.3e-73 279.6 846 29.0
Nitab4.5_0000477g0020 Nicotiana tabacum HOM05D003493 ORTHO05D003980 8.3e-73 279.6 801 28.8
C08p43630 Brassica napus HOM05D003493 ORTHO05D003980 1.1e-72 279.3 865 29.4
BolC8t51909H Brassica oleracea HOM05D003493 ORTHO05D003980 1.1e-72 279.3 865 29.4
Thhalv10018153m.g Eutrema salsugineum HOM05D003493 ORTHO05D003980 1.1e-72 279.3 857 28.1
BolC2t09128H Brassica oleracea HOM05D003493 ORTHO05D003980 1.9e-72 278.5 700 31.3
QL10p036794 Quercus lobata HOM05D003493 ORTHO05D003980 1.9e-72 278.5 641 32.3
Medtr6g066300 Medicago truncatula HOM05D003493 ORTHO05D003980 3.2e-72 277.7 778 29.0
TPR.G8876 Trifolium pratense HOM05D003493 ORTHO05D003980 5.4e-72 276.9 853 27.7
A09p60190 Brassica napus HOM05D003493 ORTHO05D003980 7.1e-72 276.6 865 29.2
BraA09t41388Z Brassica rapa HOM05D003493 ORTHO05D003980 1.6e-71 275.4 861 30.0
Psat1g117720 Pisum sativum HOM05D003493 ORTHO05D003980 4.6e-71 273.9 717 28.0
Dinv11742 Davidia involucrata HOM05D003493 ORTHO05D003980 7.8e-71 273.1 855 28.9
A07p39150 Brassica napus HOM05D003493 ORTHO05D003980 1.0e-70 272.7 689 30.8
C06p47340 Brassica napus HOM05D003493 ORTHO05D003980 2.3e-70 271.6 859 28.4
SGA_v2.0_scaffold25G10715 Striga asiatica HOM05D003493 ORTHO05D003980 2.3e-70 271.6 920 27.2
HanXRQChr08g0220881 Helianthus annuus HOM05D003493 ORTHO05D003980 3.0e-70 271.2 669 30.0
BolC6t39773H Brassica oleracea HOM05D003493 ORTHO05D003980 3.9e-70 270.8 866 28.2
ECA232G4824 Erigeron canadensis HOM05D003493 ORTHO05D003980 8.6e-70 269.6 667 31.5
CAN.G65.58 Capsicum annuum HOM05D003493 ORTHO05D003980 1.1e-69 269.2 890 26.9
BraA07t31464Z Brassica rapa HOM05D003493 ORTHO05D003980 1.9e-69 268.5 695 30.5
Medtr1g077470 Medicago truncatula HOM05D003493 ORTHO05D003980 3.3e-69 267.7 853 27.7
Zm00001eb228970 Zea mays HOM05D003493 ORTHO05D003980 5.6e-69 266.9 777 28.3
AUR62041605 Chenopodium quinoa HOM05D003493 ORTHO05D003980 9.6e-69 266.2 869 27.3
Lj9A410T67 Lonicera japonica HOM05D003493 ORTHO05D003980 6.2e-68 263.5 884 28.6
Aa31LG7G2640 Aethionema arabicum HOM05D003493 ORTHO05D003980 4.0e-67 260.8 786 28.8
Nn3g18516 Nelumbo nucifera HOM05D003493 ORTHO05D003980 8.9e-67 259.6 707 30.6
Ca_09923_v3 Cicer arietinum L. HOM05D003493 ORTHO05D003980 1.5e-66 258.8 555 31.7
arahy.Tifrunner.gnm1.ann1.W0PAIX Arachis hypogaea HOM05D003493 ORTHO05D003980 2.0e-66 258.5 866 27.5
EL10Ac8g19467 Beta vulgaris HOM05D003493 ORTHO05D003980 2.9e-65 254.6 859 27.0
Phvul.L006701 Phaseolus vulgaris HOM05D003493 ORTHO05D003980 2.9e-65 254.6 624 31.4
arahy.Tifrunner.gnm1.ann1.W71D15 Arachis hypogaea HOM05D003493 ORTHO05D003980 7.1e-64 250.0 902 27.8
Peaxi162Scf01390g00035 Petunia axillaris HOM05D003493 ORTHO05D003980 2.7e-63 248.1 791 28.7
Nitab4.5_0003367g0050 Nicotiana tabacum HOM05D003493 ORTHO05D003980 4.6e-63 247.3 857 27.4
CAN.G861.8 Capsicum annuum HOM05D003493 ORTHO05D003980 1.9e-61 241.9 816 28.4
arahy.Tifrunner.gnm1.ann1.K1F8KI Arachis hypogaea HOM05D003493 ORTHO05D003980 7.3e-61 240.0 918 26.4
Ciclev10019478m.g Citrus clementina HOM05D003493 ORTHO05D003980 1.2e-58 232.6 603 32.3
Oeu063704.1 Olea europaea HOM05D003493 ORTHO05D003980 2.6e-58 231.5 554 31.8
BcaNung05482 Brassica carinata HOM05D003493 ORTHO05D003980 3.4e-58 231.1 859 27.1
AUR62040635 Chenopodium quinoa HOM05D003493 ORTHO05D003980 5.8e-58 230.3 663 28.1
FAN13G0815 Fragaria x ananassa HOM05D003493 ORTHO05D003980 9.3e-56 223.0 1037 23.5
Potri.018G152400 Populus trichocarpa HOM05D003493 ORTHO05D003980 2.7e-55 221.5 589 30.4
CDE07G1702 Ceratophyllum demersum HOM05D003493 ORTHO05D003980 3.9e-54 217.6 876 24.7
CDE04G1302 Ceratophyllum demersum HOM05D003493 ORTHO05D003980 3.6e-52 211.1 876 24.1
SEGI_25111 Sequoiadendron giganteum HOM05D003493 ORTHO05D003980 1.8e-51 208.8 450 33.1
Os02g0827500 Oryza sativa ssp. japonica HOM05D003493 ORTHO05D003980 2.6e-50 204.9 644 28.9
PGSC0003DMG400027062 Solanum tuberosum HOM05D003493 ORTHO05D003980 2.6e-50 204.9 639 27.7
Ca_25303_v3 Cicer arietinum L. HOM05D003493 ORTHO05D003980 1.1e-48 199.5 582 26.5
DCAR_011394 Daucus carota HOM05D003493 ORTHO05D003980 4.8e-44 184.1 516 29.8
vmacro17772 Vaccinium macrocarpon HOM05D003493 ORTHO05D003980 1.8e-43 182.2 426 31.9
Gohir.A05G111401 Gossypium hirsutum HOM05D003493 ORTHO05D003980 1.2e-42 179.5 326 31.9
Oeu034417.1 Olea europaea HOM05D003493 ORTHO05D003980 5.8e-42 177.2 423 30.7
Hund06742 Selenicereus undatus HOM05D003493 ORTHO05D001641 3.3e-29 134.8 781 24.1
DCAR_011395 Daucus carota HOM05D003493 ORTHO05D003980 7.7e-26 123.6 306 29.4
Oeu034418.1 Olea europaea HOM05D003493 ORTHO05D003980 5.7e-21 107.5 292 29.1
Lj9C232G5 Lonicera japonica HOM05D003493 ORTHO05D003980 9.7e-21 106.7 378 26.7
CiPaw.15G108700 Carya illinoinensis HOM05D003493 ORTHO05D003980 2.4e-19 102.1 315 27.3
arahy.Tifrunner.gnm1.ann1.28MV8S Arachis hypogaea HOM05D003493 ORTHO05D003980 1.1e-16 93.2 149 38.9
Cpa.g.c43819 Carica papaya HOM05D003493 ORTHO05D003980 1.9e-16 92.4 120 37.5
arahy.Tifrunner.gnm1.ann1.Y1U1WE Arachis hypogaea HOM05D003493 ORTHO05D003980 6.1e-15 87.4 233 27.9
COL.COLO4_22900 Corchorus olitorius HOM05D003493 ORTHO05D003980 7.9e-15 87.0 232 30.2
arahy.Tifrunner.gnm1.ann1.LRB6U9 Arachis hypogaea HOM05D003493 ORTHO05D003980 6.7e-14 84.0 198 30.3
arahy.Tifrunner.gnm1.ann1.AF40JB Arachis hypogaea HOM05D003493 ORTHO05D003980 2.0e-13 82.4 119 35.3
arahy.Tifrunner.gnm1.ann1.PSQB2R Arachis hypogaea HOM05D003493 ORTHO05D003980 4.4e-13 81.3 119 34.5
arahy.Tifrunner.gnm1.ann1.I3UW9X Arachis hypogaea HOM05D003493 ORTHO05D003980 2.2e-12 79.0 173 31.8
arahy.Tifrunner.gnm1.ann1.XZC4F6 Arachis hypogaea HOM05D003493 ORTHO05D003980 1.8e-11 75.9 347 25.4
Hund22361 Selenicereus undatus HOM05D003493 ORTHO05D003980 7.0e-11 73.9 106 36.8
Rhsim05G0011100 Rhododendron simsii HOM05D003493 ORTHO05D003980 9.1e-11 73.6 155 31.6
MCO11G907 Micromonas commoda HOM05D003493 ORTHO05D003980 2.6e-10 72.0 260 23.8
Cpa.g.c34760 Carica papaya HOM05D003493 ORTHO05D003980 7.7e-10 70.5 65 44.6
CiPaw.15G108800 Carya illinoinensis HOM05D003493 ORTHO05D003980 7.7e-10 70.5 250 26.8
arahy.Tifrunner.gnm1.ann1.PE1W7W Arachis hypogaea HOM05D003493 ORTHO05D003980 8.0e-07 60.5 110 28.2
arahy.Tifrunner.gnm1.ann1.XN9UYN Arachis hypogaea HOM05D003493 ORTHO05D003980 1.4e-06 59.7 109 27.5


User provided reference genes

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