Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 4.3e-167 591.3 306 100.0
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 2.4e-72 276.6 261 55.9
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 3.1e-72 276.2 235 60.4
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 1.5e-71 273.9 250 56.0
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 2.0e-71 273.5 267 55.1
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 2.2e-70 270.0 255 54.5
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 2.2e-70 270.0 262 53.8
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 2.5e-69 266.5 255 53.7
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 7.1e-69 265.0 248 55.6
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 1.2e-68 264.2 254 55.5
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 2.1e-68 263.5 245 55.1
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 2.7e-68 263.1 285 51.9
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 2.7e-68 263.1 254 54.3
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 6.0e-68 261.9 239 58.2
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 7.9e-68 261.5 268 51.9
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 1.3e-67 260.8 267 52.1
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 2.3e-67 260.0 242 55.8
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 2.3e-67 260.0 242 55.8
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 2.3e-67 260.0 273 51.3
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 2.3e-67 260.0 251 53.0
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 3.9e-67 259.2 220 59.5
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 3.9e-67 259.2 262 53.8
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 3.9e-67 259.2 263 52.1
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 5.1e-67 258.8 261 52.1
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 6.7e-67 258.5 239 57.7
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 1.1e-66 257.7 243 56.4
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 1.1e-66 257.7 225 56.9
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 1.5e-66 257.3 306 50.0
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 1.5e-66 257.3 264 53.4
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 1.9e-66 256.9 223 57.4
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 1.9e-66 256.9 253 54.2
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 3.3e-66 256.1 268 50.0
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 3.3e-66 256.1 280 52.9
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 5.7e-66 255.4 304 47.4
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 5.7e-66 255.4 223 56.5
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 7.4e-66 255.0 250 54.4
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 7.4e-66 255.0 223 56.5
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 7.4e-66 255.0 257 51.8
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 9.6e-66 254.6 260 51.2
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 9.6e-66 254.6 263 52.5
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 9.6e-66 254.6 268 50.7
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 1.3e-65 254.2 270 50.7
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 1.3e-65 254.2 270 50.7
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 1.6e-65 253.8 251 52.6
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 1.6e-65 253.8 269 50.6
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 2.1e-65 253.4 268 50.7
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 2.8e-65 253.1 251 49.8
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 3.7e-65 252.7 270 50.4
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 3.7e-65 252.7 243 53.5
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 4.8e-65 252.3 259 52.1
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 4.8e-65 252.3 248 54.4
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 1.1e-64 251.1 242 54.1
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 1.1e-64 251.1 250 52.8
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 1.1e-64 251.1 266 51.1
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 1.1e-64 251.1 260 53.8
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 1.1e-64 251.1 269 50.9
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 1.4e-64 250.8 256 52.7
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 1.8e-64 250.4 246 54.1
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 2.4e-64 250.0 236 53.8
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 2.4e-64 250.0 255 51.8
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 2.0e-63 246.9 301 47.2
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 3.4e-63 246.1 242 52.5
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 3.4e-63 246.1 259 50.2
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 3.4e-63 246.1 219 56.2
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 7.6e-63 245.0 223 55.6
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 2.2e-62 243.4 221 55.2
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 3.8e-62 242.7 251 51.4
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 6.5e-62 241.9 277 49.1
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 8.4e-62 241.5 239 54.4
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 1.1e-61 241.1 286 49.0
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 1.4e-61 240.7 239 53.6
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 1.9e-61 240.4 241 52.7
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 2.5e-61 240.0 239 53.1
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 2.5e-61 240.0 243 53.9
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 4.2e-61 239.2 247 51.8
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 7.1e-61 238.4 252 51.2
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 9.3e-61 238.0 217 54.8
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 1.2e-60 237.7 251 50.6
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 1.2e-60 237.7 251 50.6
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 1.2e-60 237.7 239 52.7
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 2.1e-60 236.9 247 51.4
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 3.5e-60 236.1 250 50.8
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 3.5e-60 236.1 254 48.4
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 4.6e-60 235.7 239 52.7
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 1.3e-59 234.2 239 51.9
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.3e-59 234.2 286 47.9
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.9e-58 230.3 285 47.4
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 9.7e-58 228.0 285 47.4
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 2.2e-57 226.9 224 54.9
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 3.7e-57 226.1 211 53.6
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 6.3e-57 225.3 273 48.7
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 1.1e-56 224.6 231 52.4
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 1.1e-56 224.6 292 44.2
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 1.2e-55 221.1 254 48.0
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.9e-54 216.5 265 47.9
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 2.3e-51 206.8 250 46.8
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 1.3e-49 201.1 257 44.7
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 2.8e-49 199.9 227 44.5
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 4.8e-49 199.1 250 48.0
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 6.3e-49 198.7 247 48.2
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 1.1e-48 198.0 183 55.2
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 5.3e-48 195.7 227 44.1
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 9.1e-48 194.9 156 60.9
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 9.1e-48 194.9 174 56.3
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 2.0e-47 193.7 266 42.5
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 2.9e-46 189.9 284 40.5
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 4.2e-45 186.0 212 47.6
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 8.8e-43 178.3 227 42.3
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 1.7e-41 174.1 176 52.8
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 4.1e-40 169.5 292 37.7
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 1.8e-35 154.1 224 40.2
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 2.3e-35 153.7 182 42.9
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 4.5e-31 139.4 263 32.7
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 5.9e-31 139.0 137 52.6
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 8.5e-30 135.2 139 49.6
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 1.1e-29 134.8 238 41.2
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 1.8e-27 127.5 126 54.0
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 5.2e-27 125.9 113 55.8
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 3.4e-26 123.2 174 41.4
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 3.4e-18 96.7 169 35.5
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 3.7e-17 93.2 129 44.2
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 3.1e-16 90.1 133 38.3
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 4.1e-16 89.7 198 32.3
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 2.0e-15 87.4 188 28.2
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 5.9e-15 85.9 77 49.4
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 5.9e-15 85.9 77 48.1
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 5.0e-14 82.8 77 48.1
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 7.2e-13 79.0 78 48.7
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 6.1e-12 75.9 73 53.4
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 8.0e-12 75.5 80 51.2
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 2.9e-09 67.0 54 61.1
TPR.G21937 Trifolium pratense HOM05D005617 ORTHO05D006847 3.7e-09 66.6 57 57.9
Cre03.g171100 Chlamydomonas reinhardtii HOM05D005617 ORTHO05D006847 2.0e-07 60.8 139 31.7


User provided reference genes

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