Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0036s0032 Marchantia polymorpha HOM05D004391 ORTHO05D005193 3.2e-36 154.5 72 100.0
Pp3c11_2590 Physcomitrium patens HOM05D004391 ORTHO05D005193 9.0e-15 83.2 71 53.5
Mapoly0022s0089 Marchantia polymorpha HOM05D004391 ORTHO05D005193 1.5e-14 82.4 70 55.7
CBR_g1035 Chara braunii HOM05D004391 ORTHO05D005193 2.0e-14 82.0 73 54.8
Pp3c7_21160 Physcomitrium patens HOM05D004391 ORTHO05D005193 2.6e-14 81.6 71 52.1
Pp3c1_1570 Physcomitrium patens HOM05D004391 ORTHO05D005193 3.4e-14 81.3 71 52.1
BcaC06g32250 Brassica carinata HOM05D004391 ORTHO05D005193 1.3e-13 79.3 73 53.4
A10p30830 Brassica napus HOM05D004391 ORTHO05D005193 1.3e-13 79.3 73 53.4
C09p71330 Brassica napus HOM05D004391 ORTHO05D005193 1.3e-13 79.3 73 53.4
BolC9t59895H Brassica oleracea HOM05D004391 ORTHO05D005193 1.3e-13 79.3 73 53.4
BraA10t45125Z Brassica rapa HOM05D004391 ORTHO05D005193 1.3e-13 79.3 73 53.4
AagrBONN_evm.TU.Sc2ySwM_362.2485 Anthoceros agrestis HOM05D004391 ORTHO05D005193 1.7e-13 79.0 65 55.4
AL6G15270 Arabidopsis lyrata HOM05D004391 ORTHO05D005193 3.8e-13 77.8 73 53.4
AT5G05370 Arabidopsis thaliana HOM05D004391 ORTHO05D005193 3.8e-13 77.8 73 53.4
Lsat_1_v5_gn_5_177220 Lactuca sativa HOM05D004391 ORTHO05D005193 6.5e-13 77.0 73 49.3
Thhalv10015196m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 8.5e-13 76.6 73 52.1
Thhalv10015197m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 8.5e-13 76.6 73 52.1
Sp6g37680 Schrenkiella parvula HOM05D004391 ORTHO05D005193 8.5e-13 76.6 73 52.1
Sp3g09180 Schrenkiella parvula HOM05D004391 ORTHO05D005193 1.1e-12 76.3 73 53.4
Sp6g37450 Schrenkiella parvula HOM05D004391 ORTHO05D005193 1.1e-12 76.3 73 52.1
TPR.G7542 Trifolium pratense HOM05D004391 ORTHO05D005193 1.1e-12 76.3 71 50.7
Carub.0006s0430 Capsella rubella HOM05D004391 ORTHO05D005193 1.4e-12 75.9 73 52.1
BcaB01g05713 Brassica carinata HOM05D004391 ORTHO05D005193 1.9e-12 75.5 73 52.1
ECA248G3374 Erigeron canadensis HOM05D004391 ORTHO05D005193 2.5e-12 75.1 71 49.3
Aa31LG11G6460 Aethionema arabicum HOM05D004391 ORTHO05D005193 3.2e-12 74.7 73 49.3
A05p38380 Brassica napus HOM05D004391 ORTHO05D005193 3.2e-12 74.7 73 52.1
C05p57280 Brassica napus HOM05D004391 ORTHO05D005193 3.2e-12 74.7 73 52.1
BolC5t34384H Brassica oleracea HOM05D004391 ORTHO05D005193 3.2e-12 74.7 73 52.1
BraA05t22629Z Brassica rapa HOM05D004391 ORTHO05D005193 3.2e-12 74.7 73 52.1
AT3G10860 Arabidopsis thaliana HOM05D004391 ORTHO05D005193 4.2e-12 74.3 73 52.1
BolC1t05350H Brassica oleracea HOM05D004391 ORTHO05D005193 4.2e-12 74.3 73 52.1
BraA01t04219Z Brassica rapa HOM05D004391 ORTHO05D005193 4.2e-12 74.3 73 52.1
Carub.0003s1010 Capsella rubella HOM05D004391 ORTHO05D005193 4.2e-12 74.3 73 52.1
Thhalv10021877m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 4.2e-12 74.3 73 52.1
HanXRQChr10g0292911 Helianthus annuus HOM05D004391 ORTHO05D005193 4.2e-12 74.3 71 47.9
CARHR085430 Cardamine hirsuta HOM05D004391 ORTHO05D005193 5.5e-12 73.9 73 50.7
CARHR207860 Cardamine hirsuta HOM05D004391 ORTHO05D005193 5.5e-12 73.9 73 50.7
Medtr5g075690 Medicago truncatula HOM05D004391 ORTHO05D005193 5.5e-12 73.9 70 51.4
HanXRQChr05g0158631 Helianthus annuus HOM05D004391 ORTHO05D005193 7.2e-12 73.6 71 49.3
THA.LOC104823167 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 7.2e-12 73.6 73 49.3
A03p02270 Brassica napus HOM05D004391 ORTHO05D005193 1.6e-11 72.4 73 49.3
Haze_12207 Corylus avellana HOM05D004391 ORTHO05D005193 1.6e-11 72.4 71 49.3
LjContig00141g0006354 Lotus japonicus HOM05D004391 ORTHO05D005193 1.6e-11 72.4 71 49.3
AL3G22380 Arabidopsis lyrata HOM05D004391 ORTHO05D005193 2.1e-11 72.0 73 50.7
Aa31LG3G3850 Aethionema arabicum HOM05D004391 ORTHO05D005193 2.7e-11 71.6 73 49.3
ClCG08G017940 Citrullus lanatus HOM05D004391 ORTHO05D005193 2.7e-11 71.6 71 47.9
COL.COLO4_19488 Corchorus olitorius HOM05D004391 ORTHO05D005193 3.6e-11 71.2 71 45.1
Eucgr.G03166 Eucalyptus grandis HOM05D004391 ORTHO05D005193 4.6e-11 70.9 71 47.9
Nn5g26793 Nelumbo nucifera HOM05D004391 ORTHO05D005193 4.6e-11 70.9 71 46.5
THA.LOC104816504 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 4.6e-11 70.9 73 47.9
THA.LOC109117202 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 4.6e-11 70.9 71 47.9
Nn5g27585 Nelumbo nucifera HOM05D004391 ORTHO05D005193 6.1e-11 70.5 71 46.5
Manes.18G125100 Manihot esculenta HOM05D004391 ORTHO05D005193 7.9e-11 70.1 71 45.1
Peaxi162Scf00131g10129 Petunia axillaris HOM05D004391 ORTHO05D005193 1.0e-10 69.7 71 47.9
MELO3C010670.2 Cucumis melo HOM05D004391 ORTHO05D005193 1.4e-10 69.3 71 45.1
Duzib114G0048 Durio zibethinus HOM05D004391 ORTHO05D005193 1.4e-10 69.3 68 44.1
Nitab4.5_0000311g0070 Nicotiana tabacum HOM05D004391 ORTHO05D005193 1.4e-10 69.3 71 46.5
Sc15g0002370 Simmondsia chinensis HOM05D004391 ORTHO05D005193 1.4e-10 69.3 73 45.2
Solyc06g007540.3 Solanum lycopersicum HOM05D004391 ORTHO05D005193 1.4e-10 69.3 71 46.5
Sopen06g002450 Solanum pennellii HOM05D004391 ORTHO05D005193 1.4e-10 69.3 71 46.5
Aqoxy2G00689 Aquilegia oxysepala HOM05D004391 ORTHO05D005193 1.8e-10 68.9 70 44.3
Cc01_g15470 Coffea canephora HOM05D004391 ORTHO05D005193 1.8e-10 68.9 71 49.3
ECA236G4577 Erigeron canadensis HOM05D004391 ORTHO05D005193 1.8e-10 68.9 71 42.3
Gohir.A05G404700 Gossypium hirsutum HOM05D004391 ORTHO05D005193 1.8e-10 68.9 71 45.1
Gohir.D13G008800 Gossypium hirsutum HOM05D004391 ORTHO05D005193 1.8e-10 68.9 71 45.1
MD03G1047800 Malus domestica HOM05D004391 ORTHO05D005193 1.8e-10 68.9 71 45.1
Nitab4.5_0000105g0300 Nicotiana tabacum HOM05D004391 ORTHO05D005193 1.8e-10 68.9 71 46.5
Solyc06g082680.4 Solanum lycopersicum HOM05D004391 ORTHO05D005193 1.8e-10 68.9 71 47.9
Sopen06g034070 Solanum pennellii HOM05D004391 ORTHO05D005193 1.8e-10 68.9 71 47.9
Ciclev10033444m.g Citrus clementina HOM05D004391 ORTHO05D005193 2.3e-10 68.6 71 45.1
Peaxi162Scf00455g00003 Petunia axillaris HOM05D004391 ORTHO05D005193 2.3e-10 68.6 71 46.5
Ciclev10013576m.g Citrus clementina HOM05D004391 ORTHO05D005193 3.0e-10 68.2 71 43.7
Gohir.A13G008200 Gossypium hirsutum HOM05D004391 ORTHO05D005193 3.0e-10 68.2 71 45.1
Nitab4.5_0003194g0030 Nicotiana tabacum HOM05D004391 ORTHO05D005193 3.0e-10 68.2 71 46.5
Cfa009172 Carpinus fangiana HOM05D004391 ORTHO05D005193 3.9e-10 67.8 71 46.5
Duzib128G1816 Durio zibethinus HOM05D004391 ORTHO05D005193 3.9e-10 67.8 71 43.7
Gohir.D04G011000 Gossypium hirsutum HOM05D004391 ORTHO05D005193 3.9e-10 67.8 71 45.1
Potri.019G132000 Populus trichocarpa HOM05D004391 ORTHO05D005193 3.9e-10 67.8 71 45.1
RcHm_v2.0_Chr5g0073771 Rosa chinensis HOM05D004391 ORTHO05D005193 3.9e-10 67.8 73 46.6
PGSC0003DMG400030477 Solanum tuberosum HOM05D004391 ORTHO05D005193 3.9e-10 67.8 71 46.5
CANSAT80G1344 Cannabis sativa HOM05D004391 ORTHO05D005193 5.1e-10 67.4 71 45.1
CiPaw.05G185700 Carya illinoinensis HOM05D004391 ORTHO05D005193 5.1e-10 67.4 73 45.2
Ciclev10010097m.g Citrus clementina HOM05D004391 ORTHO05D005193 5.1e-10 67.4 71 43.7
SEGI_31881 Sequoiadendron giganteum HOM05D004391 ORTHO05D005193 5.1e-10 67.4 57 45.6
TAR633G0676 Trochodendron aralioides HOM05D004391 ORTHO05D005193 5.1e-10 67.4 70 44.3
HPP92_000080 Vanilla planifolia HOM05D004391 ORTHO05D005193 5.1e-10 67.4 71 45.1
Gorai.012G013200 Gossypium raimondii HOM05D004391 ORTHO05D005193 6.7e-10 67.0 70 44.3
Oeu025053.1 Olea europaea HOM05D004391 ORTHO05D005193 8.8e-10 66.6 71 45.1
Os06g0175900 Oryza sativa ssp. japonica HOM05D004391 ORTHO05D005193 8.8e-10 66.6 71 43.7
Os06g0177000 Oryza sativa ssp. japonica HOM05D004391 ORTHO05D005193 8.8e-10 66.6 71 43.7
Prupe.6G038800 Prunus persica HOM05D004391 ORTHO05D005193 8.8e-10 66.6 71 45.1
PGR142G4161 Punica granatum HOM05D004391 ORTHO05D005193 8.8e-10 66.6 71 43.7
TWI09G0083 Tripterygium wilfordii HOM05D004391 ORTHO05D005193 8.8e-10 66.6 71 46.5
CSS0038074 Camellia sinensis var. sinensis HOM05D004391 ORTHO05D005193 1.1e-09 66.2 71 42.3
FvH4_3g40960 Fragaria vesca HOM05D004391 ORTHO05D005193 1.1e-09 66.2 73 46.6
FAN11G0346 Fragaria x ananassa HOM05D004391 ORTHO05D005193 1.1e-09 66.2 73 46.6
FAN16G3113 Fragaria x ananassa HOM05D004391 ORTHO05D005193 1.1e-09 66.2 73 46.6
Glyma.02G237700 Glycine max HOM05D004391 ORTHO05D005193 1.1e-09 66.2 64 43.8
TWI53G1180 Tripterygium wilfordii HOM05D004391 ORTHO05D005193 1.1e-09 66.2 71 45.1
TAR369G0568 Trochodendron aralioides HOM05D004391 ORTHO05D005193 1.1e-09 66.2 71 43.7
HPP92_003137 Vanilla planifolia HOM05D004391 ORTHO05D005193 1.1e-09 66.2 71 43.7
GSVIVG01024232001 Vitis vinifera HOM05D004391 ORTHO05D005193 1.1e-09 66.2 71 42.3
CAN.G874.64 Capsicum annuum HOM05D004391 ORTHO05D005193 1.5e-09 65.9 71 46.5
Dinv12291 Davidia involucrata HOM05D000139 ORTHO05D000103 1.5e-09 65.9 70 42.9
Glyma.14G206700 Glycine max HOM05D004391 ORTHO05D005193 1.5e-09 65.9 64 43.8
Hma1.2p1_0170F.1_g075340 Hydrangea macrophylla HOM05D004391 ORTHO05D005193 1.5e-09 65.9 71 42.3
Prupe.1G250900 Prunus persica HOM05D004391 ORTHO05D005193 1.5e-09 65.9 71 42.3
Zm00001eb375180 Zea mays HOM05D004391 ORTHO05D005193 1.5e-09 65.9 71 43.7
arahy.Tifrunner.gnm1.ann1.M2MMUV Arachis hypogaea HOM05D004391 ORTHO05D005193 2.0e-09 65.5 71 43.7
GSVIVG01024535001 Vitis vinifera HOM05D004391 ORTHO05D005193 2.0e-09 65.5 71 40.8
CAN.G181.27 Capsicum annuum HOM05D004391 ORTHO05D005193 2.5e-09 65.1 71 43.7
Cpa.g.sc2.267 Carica papaya HOM05D004391 ORTHO05D005193 2.5e-09 65.1 71 42.3
Lalb_Chr10g0103971 Lupinus albus HOM05D004391 ORTHO05D005193 2.5e-09 65.1 64 43.8
Pp3c13_7360 Physcomitrium patens HOM05D004391 ORTHO05D005193 2.5e-09 65.1 71 47.9
Thecc.10G186500 Theobroma cacao HOM05D004391 ORTHO05D005193 2.5e-09 65.1 65 41.5
Ah.05g177740 Amaranthus hybridus HOM05D004391 ORTHO05D005193 3.3e-09 64.7 71 42.3
Sed0004860 Sechium edule HOM05D004391 ORTHO05D005193 3.3e-09 64.7 64 45.3
Lalb_Chr04g0251641 Lupinus albus HOM05D004391 ORTHO05D005193 4.3e-09 64.3 64 43.8
MD13G1094500 Malus domestica HOM05D004391 ORTHO05D005193 4.3e-09 64.3 71 42.3
AUR62023375 Chenopodium quinoa HOM05D004391 ORTHO05D005193 5.7e-09 63.9 71 40.8
MD16G1095600 Malus domestica HOM05D004391 ORTHO05D005193 5.7e-09 63.9 71 42.3
Phvul.008G244100 Phaseolus vulgaris HOM05D004391 ORTHO05D005193 5.7e-09 63.9 64 42.2
CSS0036971 Camellia sinensis var. sinensis HOM05D004391 ORTHO05D005193 7.4e-09 63.5 65 40.0
FAN21G2439 Fragaria x ananassa HOM05D004391 ORTHO05D005193 9.7e-09 63.2 70 45.7
FAN25G0672 Fragaria x ananassa HOM05D004391 ORTHO05D000090 9.7e-09 63.2 70 44.3
AUR62013781 Chenopodium quinoa HOM05D004391 ORTHO05D005193 1.3e-08 62.8 71 40.8
FvH4_4g07960 Fragaria vesca HOM05D004391 ORTHO05D005193 1.3e-08 62.8 73 42.5
Lsat_1_v5_gn_9_13380 Lactuca sativa HOM05D000838 ORTHO05D000656 1.3e-08 62.8 67 44.8
unitig_747.g21439 Utricularia gibba HOM05D001024 ORTHO05D000878 1.3e-08 62.8 71 40.8
Aa31LG3G4110 Aethionema arabicum HOM05D004391 ORTHO05D005193 1.7e-08 62.4 58 50.0
Migut.D00804 Erythranthe guttata HOM05D004391 ORTHO05D005193 1.7e-08 62.4 71 40.8
FvH4_4g32870 Fragaria vesca HOM05D004391 ORTHO05D005193 3.7e-08 61.2 71 40.8
FAN12G3281 Fragaria x ananassa HOM05D004391 ORTHO05D005193 3.7e-08 61.2 71 40.8
RcHm_v2.0_Chr4g0441891 Rosa chinensis HOM05D004391 ORTHO05D005193 3.7e-08 61.2 71 39.4
FAN07G1869 Fragaria x ananassa HOM05D004391 ORTHO05D005193 4.8e-08 60.8 71 40.8
FAN17G0118 Fragaria x ananassa HOM05D004391 ORTHO05D005193 4.8e-08 60.8 71 40.8
FAN22G1549 Fragaria x ananassa HOM05D004391 ORTHO05D005193 4.8e-08 60.8 71 40.8
CsaV3_2G024700 Cucumis sativus L. HOM05D004391 ORTHO05D005193 8.2e-08 60.1 58 46.6
THA.LOC104823179 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 3.1e-07 58.2 56 46.4
SalBow3G4275 Salvia bowleyana HOM05D004391 ORTHO05D005193 4.1e-07 57.8 62 41.9
Nitab4.5_0002902g0130 Nicotiana tabacum HOM05D004391 ORTHO05D005193 6.9e-07 57.0 56 46.4
Nitab4.5_0002167g0040 Nicotiana tabacum HOM05D004391 ORTHO05D005193 9.1e-07 56.6 56 46.4
Gorai.013G009600 Gossypium raimondii HOM05D004391 ORTHO05D005193 1.2e-06 56.2 56 44.6
PGSC0003DMG400020649 Solanum tuberosum HOM05D004391 ORTHO05D005193 1.2e-06 56.2 56 48.2
vmacro02862 Vaccinium macrocarpon HOM05D004391 ORTHO05D005193 1.5e-06 55.8 70 38.6
Zm00001eb281780 Zea mays HOM05D004391 ORTHO05D005193 2.0e-06 55.5 56 42.9
VMungo0647G0523 Vigna mungo HOM05D004391 ORTHO05D005193 3.4e-06 54.7 49 42.9
QL03p059558 Quercus lobata HOM05D004391 ORTHO05D005193 4.5e-06 54.3 58 43.1
SGA_v2.0_scaffold122G33334 Striga asiatica HOM05D004391 ORTHO05D005193 7.7e-06 53.5 58 43.1


User provided reference genes

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