Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0035s0136 Marchantia polymorpha HOM05D005888 ORTHO05D007791 0.0e+00 1171.0 584 100.0
Pp3c10_19430 Physcomitrium patens HOM05D005888 ORTHO05D007791 1.9e-187 659.8 461 67.5
SMO364G0044 Selaginella moellendorffii HOM05D005888 ORTHO05D007791 1.5e-160 570.5 446 59.0
Glyma.16G057700 Glycine max HOM05D005888 ORTHO05D007791 1.9e-155 553.5 458 57.4
MD09G1012500 Malus domestica HOM05D005888 ORTHO05D007791 7.3e-155 551.6 464 56.2
Medtr7g029350 Medicago truncatula HOM05D005888 ORTHO05D007791 4.7e-154 548.9 458 55.5
Zm00001eb364480 Zea mays HOM05D005888 ORTHO05D007791 2.3e-153 546.6 466 54.1
Ciclev10014957m.g Citrus clementina HOM05D005888 ORTHO05D007791 3.1e-153 546.2 471 55.6
PGR083G0577 Punica granatum HOM05D005888 ORTHO05D007791 3.1e-153 546.2 474 55.9
Actinidia05914 Actinidia chinensis HOM05D005888 ORTHO05D007791 4.0e-153 545.8 454 55.7
Lj1g0026523 Lotus japonicus HOM05D005888 ORTHO05D007791 5.2e-153 545.4 458 55.9
GSVIVG01033109001 Vitis vinifera HOM05D005888 ORTHO05D007791 6.8e-153 545.0 462 55.4
ATR0561G016 Amborella trichopoda HOM05D005888 ORTHO05D007791 2.0e-152 543.5 476 53.8
FvH4_6g53250 Fragaria vesca HOM05D005888 ORTHO05D007791 2.0e-152 543.5 463 54.4
RcHm_v2.0_Chr2g0175381 Rosa chinensis HOM05D005888 ORTHO05D007791 2.6e-152 543.1 463 54.2
Phvul.001G094800 Phaseolus vulgaris HOM05D005888 ORTHO05D007791 3.4e-152 542.7 458 55.9
Dinv33348 Davidia involucrata HOM05D005888 ORTHO05D007791 5.8e-152 542.0 463 55.7
arahy.Tifrunner.gnm1.ann1.269ICV Arachis hypogaea HOM05D005888 ORTHO05D007791 9.8e-152 541.2 460 56.3
Thecc.04G034400 Theobroma cacao HOM05D005888 ORTHO05D007791 9.8e-152 541.2 466 54.5
Manes.15G159600 Manihot esculenta HOM05D005888 ORTHO05D007791 2.2e-151 540.0 466 56.0
Sed0023439 Sechium edule HOM05D005888 ORTHO05D007791 4.9e-151 538.9 456 55.7
Lalb_Chr22g0360441 Lupinus albus HOM05D005888 ORTHO05D007791 1.4e-150 537.3 459 55.1
arahy.Tifrunner.gnm1.ann1.BEVL6N Arachis hypogaea HOM05D005888 ORTHO05D007791 1.9e-150 537.0 460 56.1
CiPaw.03G054300 Carya illinoinensis HOM05D005888 ORTHO05D007791 1.9e-150 537.0 477 52.8
Prupe.3G304500 Prunus persica HOM05D005888 ORTHO05D007791 2.4e-150 536.6 463 54.9
CsaV3_3G027150 Cucumis sativus L. HOM05D005888 ORTHO05D007791 5.4e-150 535.4 462 54.1
QL02p071659 Quercus lobata HOM05D005888 ORTHO05D007791 5.4e-150 535.4 482 53.7
MELO3C014874.2 Cucumis melo HOM05D005888 ORTHO05D007791 7.1e-150 535.0 456 54.6
Eucgr.J02331 Eucalyptus grandis HOM05D005888 ORTHO05D007791 7.1e-150 535.0 469 54.4
Solyc03g005010.4 Solanum lycopersicum HOM05D005888 ORTHO05D007791 7.1e-150 535.0 462 55.0
Sc03g0006610 Simmondsia chinensis HOM05D005888 ORTHO05D007791 1.6e-149 533.9 462 55.4
TPR.G38314 Trifolium pratense HOM05D005888 ORTHO05D007791 1.6e-149 533.9 451 55.4
THA.LOC104823976 Tarenaya hassleriana HOM05D005888 ORTHO05D007791 2.1e-149 533.5 463 55.3
Sopen03g001020 Solanum pennellii HOM05D005888 ORTHO05D007791 2.7e-149 533.1 462 54.8
Hma1.2p1_0279F.1_g112650 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 3.5e-149 532.7 443 56.2
Carub.0005s0545 Capsella rubella HOM05D005888 ORTHO05D007791 4.6e-149 532.3 477 53.7
Nn4g22357 Nelumbo nucifera HOM05D005888 ORTHO05D007791 1.0e-148 531.2 464 54.3
Aqoxy5G03414 Aquilegia oxysepala HOM05D005888 ORTHO05D007791 1.3e-148 530.8 462 54.3
AL5G16294 Arabidopsis lyrata HOM05D005888 ORTHO05D007791 3.9e-148 529.3 477 53.5
PSO782G2046 Papaver somniferum HOM05D005888 ORTHO05D007791 5.1e-148 528.9 457 54.5
Potri.001G331900 Populus trichocarpa HOM05D005888 ORTHO05D007791 5.1e-148 528.9 463 55.1
Sp2g16300 Schrenkiella parvula HOM05D005888 ORTHO05D007791 5.1e-148 528.9 477 53.9
TWI36G1634 Tripterygium wilfordii HOM05D005888 ORTHO05D007791 1.1e-147 527.7 464 55.0
AT3G27180 Arabidopsis thaliana HOM05D005888 ORTHO05D007791 1.5e-147 527.3 477 53.2
CANSAT64G1138 Cannabis sativa HOM05D005888 ORTHO05D007791 1.5e-147 527.3 462 53.9
SalBow7G4553 Salvia bowleyana HOM05D005888 ORTHO05D007791 1.5e-147 527.3 474 52.7
Atru.chr6.2554 Acer truncatum HOM05D005888 ORTHO05D007791 2.5e-147 526.6 457 54.5
Atru.chr6.2546 Acer truncatum HOM05D005888 ORTHO05D007791 3.3e-147 526.2 457 54.3
Gorai.011G091800 Gossypium raimondii HOM05D005888 ORTHO05D007791 3.3e-147 526.2 464 53.4
PSO063G1934 Papaver somniferum HOM05D005888 ORTHO05D007791 4.3e-147 525.8 447 55.0
Migut.K01458 Erythranthe guttata HOM05D005888 ORTHO05D007791 5.6e-147 525.4 466 54.1
ECA238G1812 Erigeron canadensis HOM05D005888 ORTHO05D001226 9.5e-147 524.6 456 53.1
Gohir.A10G159400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 1.2e-146 524.2 462 53.7
CARHR148380 Cardamine hirsuta HOM05D005888 ORTHO05D007791 2.1e-146 523.5 476 53.4
A06p41440 Brassica napus HOM05D005888 ORTHO05D007791 3.6e-146 522.7 482 53.1
MSTRG.15566 Avicennia marina HOM05D005888 ORTHO05D007791 8.1e-146 521.5 476 52.7
Cc07_g00720 Coffea canephora HOM05D005888 ORTHO05D007791 1.4e-145 520.8 448 54.5
C07p36200 Brassica napus HOM05D005888 ORTHO05D007791 1.8e-145 520.4 486 52.7
BolC7t44136H Brassica oleracea HOM05D005888 ORTHO05D007791 1.8e-145 520.4 482 52.9
BraA06t27070Z Brassica rapa HOM05D005888 ORTHO05D007791 6.8e-145 518.5 470 53.6
ClCG05G013410 Citrullus lanatus HOM05D005888 ORTHO05D007791 8.9e-145 518.1 471 53.1
HPP92_006968 Vanilla planifolia HOM05D005888 ORTHO05D007791 2.0e-144 516.9 460 52.4
Gohir.D10G084400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 5.8e-144 515.4 464 53.0
AagrBONN_evm.TU.Sc2ySwM_344.2002 Anthoceros agrestis HOM05D005888 ORTHO05D007791 2.2e-143 513.5 408 60.5
Thhalv10003965m.g Eutrema salsugineum HOM05D005888 ORTHO05D007791 3.7e-143 512.7 502 50.4
Cpa.g.sc171.27 Carica papaya HOM05D005888 ORTHO05D007791 4.9e-143 512.3 462 53.9
Aa31LG2G5450 Aethionema arabicum HOM05D005888 ORTHO05D007791 1.1e-142 511.1 472 54.0
PGSC0003DMG400013424 Solanum tuberosum HOM05D005888 ORTHO05D007791 1.4e-142 510.8 444 53.6
Rhsim10G0007200 Rhododendron simsii HOM05D005888 ORTHO05D007791 2.4e-142 510.0 504 50.6
Lju41C52T2 Lonicera japonica HOM05D005888 ORTHO05D007791 5.4e-142 508.8 435 54.7
Lsat_1_v5_gn_2_94140 Lactuca sativa HOM05D005888 ORTHO05D007791 7.1e-142 508.4 465 50.8
CDE05G3258 Ceratophyllum demersum HOM05D005888 ORTHO05D007791 2.1e-141 506.9 463 51.6
EL10Ac5g11325 Beta vulgaris HOM05D005888 ORTHO05D007791 2.7e-141 506.5 436 54.8
DCAR_021782 Daucus carota HOM05D005888 ORTHO05D007791 2.5e-139 500.0 437 54.0
HanXRQChr14g0450691 Helianthus annuus HOM05D005888 ORTHO05D007791 5.6e-139 498.8 472 51.1
Psat3g164600 Pisum sativum HOM05D005888 ORTHO05D007791 6.2e-138 495.4 412 56.6
Nitab4.5_0000559g0440 Nicotiana tabacum HOM05D005888 ORTHO05D007791 1.8e-137 493.8 477 50.9
FAN05G3931 Fragaria x ananassa HOM05D005888 ORTHO05D007791 6.8e-137 491.9 469 50.1
Peaxi162Scf00700g00115 Petunia axillaris HOM05D005888 ORTHO05D007791 2.6e-136 490.0 457 52.3
BcaC06g33851 Brassica carinata HOM05D005888 ORTHO05D007791 2.2e-135 486.9 476 51.1
FAN02G1540 Fragaria x ananassa HOM05D005888 ORTHO05D007791 7.1e-134 481.9 475 48.8
Cfa007240 Carpinus fangiana HOM05D005888 ORTHO05D007791 1.6e-133 480.7 465 50.3
Sabra16G0212900 Salix brachista HOM05D005888 ORTHO05D007791 2.3e-132 476.9 471 51.2
CBR_g38076 Chara braunii HOM05D005888 ORTHO05D007791 8.7e-132 474.9 381 59.6
vmacro05950 Vaccinium macrocarpon HOM05D005888 ORTHO05D007791 5.6e-131 472.2 476 48.7
Oeu011755.2 Olea europaea HOM05D005888 ORTHO05D007791 1.3e-130 471.1 470 49.6
AUR62034780 Chenopodium quinoa HOM05D005888 ORTHO05D007791 6.2e-130 468.8 463 50.3
COL.COLO4_17186 Corchorus olitorius HOM05D005888 ORTHO05D007791 6.9e-129 465.3 412 52.9
FAN14G3555 Fragaria x ananassa HOM05D005888 ORTHO05D007791 7.1e-126 455.3 463 47.7
SGA_v2.0_scaffold47G17585 Striga asiatica HOM05D005888 ORTHO05D000781 9.3e-126 454.9 415 51.1
Nitab4.5_0005161g0030 Nicotiana tabacum HOM05D005888 ORTHO05D007791 6.7e-116 422.2 462 47.0
Duzib187G0894 Durio zibethinus HOM05D005888 ORTHO05D007791 2.0e-112 410.6 463 44.7
CAN.G1751.4 Capsicum annuum HOM05D005888 ORTHO05D007791 7.6e-104 382.1 341 53.4
TAR374G0091 Trochodendron aralioides HOM05D005888 ORTHO05D007791 1.4e-102 377.9 322 55.6
FAN05G4989 Fragaria x ananassa HOM05D005888 ORTHO05D007791 2.5e-102 377.1 365 50.4
Hma1.2p1_0279F.1_g112640 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 9.3e-102 375.2 318 56.0
Os01g0920300 Oryza sativa ssp. japonica HOM05D005888 ORTHO05D007791 1.4e-97 361.3 304 56.2
Haze_14860 Corylus avellana HOM05D005888 ORTHO05D007791 1.0e-95 355.1 458 41.7
Ca_11801_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 7.2e-94 349.0 346 51.7
AUR62009505 Chenopodium quinoa HOM05D005888 ORTHO05D007791 9.4e-94 348.6 392 45.7
Actinidia36191 Actinidia chinensis HOM05D005888 ORTHO05D007791 1.8e-84 317.8 291 55.0
VMungo1383G0859 Vigna mungo HOM05D005888 ORTHO05D007791 6.7e-76 289.3 294 49.7
MCO16G034 Micromonas commoda HOM05D005888 ORTHO05D007791 2.5e-70 270.8 540 34.4
AUR62044347 Chenopodium quinoa HOM05D005888 ORTHO05D007791 2.7e-69 267.3 392 38.3
VMungo1383G0786 Vigna mungo HOM05D005888 ORTHO05D007791 9.4e-62 242.3 197 55.3
Ah.11g046710 Amaranthus hybridus HOM05D005888 ORTHO05D007791 4.7e-61 240.0 229 52.4
BcaC06g31013 Brassica carinata HOM05D005888 ORTHO05D007791 6.3e-58 229.6 231 50.2
Atru.chr6.2542 Acer truncatum HOM05D005888 ORTHO05D007791 1.3e-55 221.9 226 47.8
CSS0026485 Camellia sinensis var. sinensis HOM05D005888 ORTHO05D007791 1.3e-47 195.3 209 46.4
PRCOL_00001844 Prasinoderma coloniale HOM05D005888 ORTHO05D007791 6.4e-34 149.8 417 30.0
FAN09G0079 Fragaria x ananassa HOM05D000071 ORTHO05D007791 7.8e-32 142.9 117 52.1
Cre13.g578012 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 3.7e-26 124.0 379 26.6
Ca_27688_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 3.3e-22 110.9 83 54.2
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 2.0e-19 101.7 360 26.4
Cre13.g578201 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 3.8e-18 97.4 175 31.4
Atru.chr6.2543 Acer truncatum HOM05D005888 ORTHO05D007791 4.2e-17 94.0 89 50.6
RcHm_v2.0_Chr7g0179331 Rosa chinensis HOM05D005888 ORTHO05D007791 4.2e-17 94.0 88 51.1
GSVIVG01006690001 Vitis vinifera HOM05D005888 ORTHO05D007791 4.3e-14 84.0 68 61.8
SEGI_20285 Sequoiadendron giganteum HOM05D005888 ORTHO05D007791 1.3e-13 82.4 75 49.3
GSVIVG01033112001 Vitis vinifera HOM05D005888 ORTHO05D007791 2.4e-12 78.2 64 51.6
PRCOL_00006587 Prasinoderma coloniale HOM05D005216 ORTHO05D006453 9.3e-09 66.2 296 26.4
RcHm_v2.0_Chr7g0239971 Rosa chinensis HOM05D005888 ORTHO05D007791 1.2e-08 65.9 47 57.4


User provided reference genes

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