Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0035s0117 Marchantia polymorpha HOM05D005881 ORTHO05D007298 3.0e-37 157.9 75 100.0
Lsat_1_v5_gn_9_121521 Lactuca sativa HOM05D005881 ORTHO05D007298 7.7e-25 116.7 74 71.6
TPR.G37331 Trifolium pratense HOM05D005881 ORTHO05D007298 1.0e-24 116.3 74 70.3
Eucgr.K01416 Eucalyptus grandis HOM05D005881 ORTHO05D007298 2.9e-24 114.8 74 70.3
Manes.07G028000 Manihot esculenta HOM05D005881 ORTHO05D007298 2.9e-24 114.8 74 70.3
Lj6g0001713 Lotus japonicus HOM05D005881 ORTHO05D007298 3.8e-24 114.4 74 68.9
arahy.Tifrunner.gnm1.ann1.8HB0N1 Arachis hypogaea HOM05D005881 ORTHO05D007298 5.0e-24 114.0 74 70.3
Aqoxy1G00234 Aquilegia oxysepala HOM05D005881 ORTHO05D007298 6.5e-24 113.6 74 70.3
PSO170G3105 Papaver somniferum HOM05D005881 ORTHO05D007298 6.5e-24 113.6 71 70.4
HanXRQChr17g0543881 Helianthus annuus HOM05D005881 ORTHO05D007298 8.5e-24 113.2 74 68.9
PSO407G0212 Papaver somniferum HOM05D005881 ORTHO05D007298 8.5e-24 113.2 74 67.6
DCAR_001713 Daucus carota HOM05D005881 ORTHO05D007298 1.1e-23 112.8 74 68.9
CDE08G1319 Ceratophyllum demersum HOM05D005881 ORTHO05D007298 1.4e-23 112.5 74 67.6
Glyma.11G208400 Glycine max HOM05D005881 ORTHO05D007298 1.4e-23 112.5 74 68.9
Glyma.18G045400 Glycine max HOM05D005881 ORTHO05D007298 1.4e-23 112.5 74 68.9
ECA246G1780 Erigeron canadensis HOM05D005881 ORTHO05D007298 1.9e-23 112.1 74 68.9
Migut.N00857 Erythranthe guttata HOM05D005881 ORTHO05D007298 1.9e-23 112.1 74 67.6
Migut.O00861 Erythranthe guttata HOM05D005881 ORTHO05D007298 1.9e-23 112.1 74 67.6
PSO017G1314 Papaver somniferum HOM05D005881 ORTHO05D007298 1.9e-23 112.1 74 67.6
Prupe.1G582900 Prunus persica HOM05D005881 ORTHO05D007298 1.9e-23 112.1 74 68.9
MD09G1270200 Malus domestica HOM05D005881 ORTHO05D007298 2.5e-23 111.7 74 67.6
Manes.10G110680 Manihot esculenta HOM05D005881 ORTHO05D007298 2.5e-23 111.7 74 68.9
Medtr3g064240 Medicago truncatula HOM05D005881 ORTHO05D007298 2.5e-23 111.7 74 67.6
Os02g0560450 Oryza sativa ssp. japonica HOM05D005881 ORTHO05D007298 2.5e-23 111.7 73 69.9
arahy.Tifrunner.gnm1.ann1.6Q1IVA Arachis hypogaea HOM05D005881 ORTHO05D007298 3.2e-23 111.3 74 68.9
arahy.Tifrunner.gnm1.ann1.GZL8T6 Arachis hypogaea HOM05D005881 ORTHO05D007298 3.2e-23 111.3 74 68.9
Lalb_Chr18g0053871 Lupinus albus HOM05D005881 ORTHO05D007298 3.2e-23 111.3 74 67.6
Thecc.02G037800 Theobroma cacao HOM05D005881 ORTHO05D007298 3.2e-23 111.3 74 66.2
Haze_07862 Corylus avellana HOM05D005881 ORTHO05D007298 4.2e-23 110.9 74 67.6
vmacro19838 Vaccinium macrocarpon HOM05D005881 ORTHO05D007298 4.2e-23 110.9 74 66.2
CiPaw.06G026000 Carya illinoinensis HOM05D005881 ORTHO05D007298 5.5e-23 110.5 74 67.6
ClCG10G007340 Citrullus lanatus HOM05D005881 ORTHO05D007298 5.5e-23 110.5 74 67.6
Cc02_g34860 Coffea canephora HOM05D005881 ORTHO05D007298 5.5e-23 110.5 74 64.9
FvH4_5g29590 Fragaria vesca HOM05D005881 ORTHO05D007298 5.5e-23 110.5 74 64.9
MD17G1268300 Malus domestica HOM05D005881 ORTHO05D007298 5.5e-23 110.5 74 66.2
Potri.004G227500 Populus trichocarpa HOM05D005881 ORTHO05D007298 5.5e-23 110.5 74 67.6
PGR042G2514 Punica granatum HOM05D005881 ORTHO05D007298 5.5e-23 110.5 71 69.0
QL02p102397 Quercus lobata HOM05D005881 ORTHO05D007298 7.2e-23 110.2 74 67.6
THA.LOC104812459 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 7.2e-23 110.2 74 64.9
CSS0041173 Camellia sinensis var. sinensis HOM05D005881 ORTHO05D007298 9.4e-23 109.8 74 67.6
Cfa026039 Carpinus fangiana HOM05D005881 ORTHO05D007298 9.4e-23 109.8 74 67.6
MBI06_g43454_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 9.4e-23 109.8 74 66.2
QL02p103034 Quercus lobata HOM05D005881 ORTHO05D007298 9.4e-23 109.8 74 67.6
TWI79G0203 Tripterygium wilfordii HOM05D005881 ORTHO05D007298 9.4e-23 109.8 74 66.2
Ah.00g001370 Amaranthus hybridus HOM05D005881 ORTHO05D007298 1.2e-22 109.4 74 66.2
RcHm_v2.0_Chr7g0222581 Rosa chinensis HOM05D005881 ORTHO05D007298 1.2e-22 109.4 74 63.5
Gohir.1Z049413 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.6e-22 109.0 74 64.9
Gohir.1Z049621 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.6e-22 109.0 74 64.9
Gohir.D10G000200 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.1e-22 108.6 74 63.5
Gorai.002G000700 Gossypium raimondii HOM05D005881 ORTHO05D007298 2.1e-22 108.6 74 64.9
Oeu010217.3 Olea europaea HOM05D005881 ORTHO05D007298 2.1e-22 108.6 74 66.2
Sed0016149 Sechium edule HOM05D005881 ORTHO05D007298 2.1e-22 108.6 74 67.6
Sc07g0003630 Simmondsia chinensis HOM05D005881 ORTHO05D007298 2.1e-22 108.6 74 64.9
CANSAT54G2245 Cannabis sativa HOM05D005881 ORTHO05D007298 2.7e-22 108.2 74 67.6
arahy.Tifrunner.gnm1.ann1.VTJ29R Arachis hypogaea HOM05D005881 ORTHO05D007298 3.6e-22 107.8 79 65.8
CAN.G855.36 Capsicum annuum HOM05D005881 ORTHO05D007298 3.6e-22 107.8 74 64.9
Atru.chr6.354 Acer truncatum HOM05D005881 ORTHO05D007298 4.7e-22 107.5 74 63.5
Haze_12831 Corylus avellana HOM05D005881 ORTHO05D007298 4.7e-22 107.5 74 66.2
Nitab4.5_0001057g0140 Nicotiana tabacum HOM05D005881 ORTHO05D007298 4.7e-22 107.5 74 63.5
Peaxi162Scf00450g00736 Petunia axillaris HOM05D005881 ORTHO05D007298 4.7e-22 107.5 74 64.9
SGA_v2.0_scaffold254G45257 Striga asiatica HOM05D005881 ORTHO05D007298 4.7e-22 107.5 74 62.2
EL10Ac2g04867 Beta vulgaris HOM05D005881 ORTHO05D007298 1.0e-21 106.3 74 63.5
AUR62022918 Chenopodium quinoa HOM05D005881 ORTHO05D007298 1.0e-21 106.3 74 63.5
Nn2g11943 Nelumbo nucifera HOM05D005881 ORTHO05D007298 1.0e-21 106.3 74 63.5
Ciclev10002996m.g Citrus clementina HOM05D005881 ORTHO05D007298 1.4e-21 105.9 74 63.5
Duzib052G1237 Durio zibethinus HOM05D005881 ORTHO05D007298 1.4e-21 105.9 74 62.2
TAR623G1668 Trochodendron aralioides HOM05D005881 ORTHO05D007298 1.4e-21 105.9 74 64.9
Oeu003780.1 Olea europaea HOM05D005881 ORTHO05D007298 1.8e-21 105.5 74 63.5
Solyc01g103190.3 Solanum lycopersicum HOM05D005881 ORTHO05D007298 1.8e-21 105.5 74 60.8
Sopen01g045600 Solanum pennellii HOM05D005881 ORTHO05D007298 1.8e-21 105.5 74 60.8
Sopen01g045620 Solanum pennellii HOM05D005881 ORTHO05D007298 1.8e-21 105.5 74 60.8
Gohir.A01G000500 Gossypium hirsutum HOM05D005881 ORTHO05D007298 3.0e-21 104.8 74 62.2
THA.LOC104812941 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 3.0e-21 104.8 74 60.8
AagrBONN_evm.TU.Sc2ySwM_117.2390 Anthoceros agrestis HOM05D005881 ORTHO05D007298 8.8e-21 103.2 73 64.4
AL3G11760 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 8.8e-21 103.2 74 60.8
AT4G21192 Arabidopsis thaliana HOM05D005881 ORTHO05D007298 8.8e-21 103.2 74 60.8
Hma1.2p1_0052F.1_g029890 Hydrangea macrophylla HOM05D005881 ORTHO05D007298 8.8e-21 103.2 74 63.5
Carub.0007s2023 Capsella rubella HOM05D005881 ORTHO05D007298 1.5e-20 102.4 74 59.5
AL7G32920 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 2.0e-20 102.1 74 59.5
Aa31LG6G3200 Aethionema arabicum HOM05D005881 ORTHO05D007298 2.6e-20 101.7 74 59.5
CARHR227780 Cardamine hirsuta HOM05D005881 ORTHO05D007298 4.4e-20 100.9 74 59.5
Gohir.1Z049575 Gossypium hirsutum HOM05D005881 ORTHO05D007298 5.7e-20 100.5 74 62.2
Gorai.002G000900 Gossypium raimondii HOM05D005881 ORTHO05D007298 5.7e-20 100.5 74 62.2
Thhalv10026658m.g Eutrema salsugineum HOM05D005881 ORTHO05D007298 7.4e-20 100.1 70 61.4
FAN18G0030 Fragaria x ananassa HOM05D005881 ORTHO05D007298 9.7e-20 99.8 91 52.7
Sp7g19280 Schrenkiella parvula HOM05D005881 ORTHO05D007298 9.7e-20 99.8 74 58.1
BcaC01g00708 Brassica carinata HOM05D005881 ORTHO05D007298 1.3e-19 99.4 74 58.1
BolC3t20627H Brassica oleracea HOM05D005881 ORTHO05D007298 1.3e-19 99.4 74 58.1
BraA08t33500Z Brassica rapa HOM05D005881 ORTHO05D007298 1.3e-19 99.4 74 58.1
GSVIVG01023198001 Vitis vinifera HOM05D005881 ORTHO05D007298 1.3e-19 99.4 74 59.5
C03p83470 Brassica napus HOM05D005881 ORTHO05D007298 2.2e-19 98.6 74 58.1
BcaC06g30655 Brassica carinata HOM05D005881 ORTHO05D007298 3.7e-19 97.8 74 59.5
Nitab4.5_0002546g0080 Nicotiana tabacum HOM05D005881 ORTHO05D007298 3.7e-19 97.8 88 53.4
BcaNung00865 Brassica carinata HOM05D005881 ORTHO05D007298 4.8e-19 97.4 74 59.5
A03p52690 Brassica napus HOM05D005881 ORTHO05D007298 4.8e-19 97.4 74 59.5
C07p51120 Brassica napus HOM05D005881 ORTHO05D007298 4.8e-19 97.4 74 59.5
BolC7t45612H Brassica oleracea HOM05D005881 ORTHO05D007298 4.8e-19 97.4 74 59.5
BraA03t14343Z Brassica rapa HOM05D005881 ORTHO05D007298 4.8e-19 97.4 74 59.5
Gohir.1Z049675 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.4e-18 95.9 58 69.0
Gohir.1Z049313 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.4e-18 95.1 74 60.8
Zm00001eb244030 Zea mays HOM05D005881 ORTHO05D007298 7.7e-17 90.1 61 67.2
PGSC0003DMG400024874 Solanum tuberosum HOM05D005881 ORTHO05D007298 3.8e-16 87.8 109 41.3
SGA_v2.0_scaffold131G34400 Striga asiatica HOM05D005881 ORTHO05D007298 5.0e-16 87.4 62 62.9
Phvul.006G085400 Phaseolus vulgaris HOM05D005881 ORTHO05D007298 6.5e-16 87.0 50 72.0
CsaV3_3G006580 Cucumis sativus L. HOM05D005881 ORTHO05D007298 8.5e-16 86.7 62 64.5
COL.COLO4_17857 Corchorus olitorius HOM05D005881 ORTHO05D007298 1.5e-15 85.9 62 62.9
Rhsim11G0129900 Rhododendron simsii HOM05D005881 ORTHO05D007298 2.5e-15 85.1 60 63.3
Gohir.A01G140426 Gossypium hirsutum HOM05D005881 ORTHO05D007298 7.2e-15 83.6 62 59.7
Cfa021151 Carpinus fangiana HOM05D005881 ORTHO05D007298 9.4e-15 83.2 63 61.9
Haze_20435 Corylus avellana HOM05D005881 ORTHO05D007298 9.4e-15 83.2 63 60.3
Gohir.1Z049721 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.6e-14 82.4 65 60.0
MBI06_g45555_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 1.6e-14 82.4 60 61.7
EL10Ac4g07780 Beta vulgaris HOM05D000065 ORTHO05D002939 2.1e-14 82.0 51 64.7
EL10Ac4g07877 Beta vulgaris HOM05D005881 ORTHO05D007298 2.1e-14 82.0 51 64.7
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 2.1e-14 82.0 62 58.1
Gorai.011G000600 Gossypium raimondii HOM05D005881 ORTHO05D007298 2.1e-14 82.0 65 58.5
Nitab4.5_0001057g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 2.7e-14 81.6 60 60.0
Cfa026049 Carpinus fangiana HOM05D005881 ORTHO05D007298 3.6e-14 81.3 59 64.4
unitig_22.g6105 Utricularia gibba HOM05D005881 ORTHO05D007298 1.4e-13 79.3 58 62.1
A08p15220 Brassica napus HOM05D005881 ORTHO05D007298 1.2e-12 76.3 67 50.7
Haze_10676 Corylus avellana HOM05D005881 ORTHO05D007298 4.4e-12 74.3 63 57.1
BcaC02g10665 Brassica carinata HOM05D005881 ORTHO05D007298 5.7e-12 73.9 48 60.4
C04p26430 Brassica napus HOM05D005881 ORTHO05D007298 5.7e-12 73.9 48 60.4
BolC4t24162H Brassica oleracea HOM05D005881 ORTHO05D007298 5.7e-12 73.9 48 60.4
Rhsim06G0200500 Rhododendron simsii HOM05D005881 ORTHO05D007298 5.7e-12 73.9 60 55.0
EL10Ac7g16281 Beta vulgaris HOM05D005881 ORTHO05D007298 8.3e-11 70.1 66 50.0
Haze_10008 Corylus avellana HOM05D000045 ORTHO05D001346 8.3e-11 70.1 54 61.1
Haze_09300 Corylus avellana HOM05D005881 ORTHO05D007298 1.1e-10 69.7 63 55.6
MCO07G551 Micromonas commoda HOM05D005881 ORTHO05D007298 7.7e-09 63.5 75 40.0
HPP92_009201 Vanilla planifolia HOM05D005881 ORTHO05D007298 7.7e-09 63.5 48 60.4
Cre16.g682587 Chlamydomonas reinhardtii HOM05D005881 ORTHO05D007298 2.9e-08 61.6 74 41.9
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 1.1e-07 59.7 50 52.0
MELO3C032219.2 Cucumis melo HOM05D005881 ORTHO05D007298 2.5e-07 58.5 35 68.6
arahy.Tifrunner.gnm1.ann1.0A1TZX Arachis hypogaea HOM05D001400 ORTHO05D016394 9.4e-07 56.6 36 63.9
MBI06_g35042_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 6.1e-06 53.9 61 44.3


User provided reference genes

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