Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 0.0e+00 1493.8 738 100.0
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 0.0e+00 1094.0 734 72.5
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 0.0e+00 1089.7 735 71.0
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 5.0e-302 1040.8 723 68.9
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 1.6e-292 1009.2 667 74.2
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 1.8e-291 1005.7 734 66.2
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 7.0e-288 993.8 735 66.3
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 9.2e-288 993.4 661 73.1
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 9.2e-288 993.4 735 66.1
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 1.6e-287 992.6 735 66.1
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 1.6e-287 992.6 735 66.1
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 2.0e-287 992.3 727 65.7
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 2.0e-287 992.3 727 65.7
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 2.0e-287 992.3 735 66.1
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 2.7e-287 991.9 735 65.9
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 7.7e-287 990.3 734 65.7
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 1.3e-286 989.6 735 65.4
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 1.3e-286 989.6 736 65.6
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 5.0e-286 987.6 734 65.4
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 5.0e-286 987.6 727 65.5
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 6.6e-286 987.3 737 64.9
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 6.6e-286 987.3 735 65.4
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 8.6e-286 986.9 734 65.5
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 1.1e-285 986.5 735 66.0
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 1.5e-285 986.1 734 65.3
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 1.9e-285 985.7 734 65.4
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 1.9e-285 985.7 734 65.4
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 1.9e-285 985.7 736 65.5
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 3.3e-285 984.9 728 65.5
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 4.3e-285 984.6 736 65.6
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 4.3e-285 984.6 736 65.4
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 5.6e-285 984.2 692 67.8
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 7.3e-285 983.8 734 65.4
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 7.3e-285 983.8 734 65.0
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 9.5e-285 983.4 728 65.4
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 1.2e-284 983.0 736 65.2
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 2.8e-284 981.9 735 65.0
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 2.8e-284 981.9 734 65.3
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 3.6e-284 981.5 736 64.8
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 3.6e-284 981.5 736 65.2
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 4.7e-284 981.1 734 65.5
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 8.0e-284 980.3 736 64.9
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 1.4e-283 979.5 734 64.9
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 1.8e-283 979.2 736 66.2
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 1.8e-283 979.2 734 65.1
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 2.3e-283 978.8 736 65.2
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 2.3e-283 978.8 707 66.2
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 3.0e-283 978.4 736 64.9
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 3.0e-283 978.4 728 65.1
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 3.0e-283 978.4 734 64.9
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 3.0e-283 978.4 735 64.9
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 4.0e-283 978.0 734 65.0
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 4.0e-283 978.0 734 65.1
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 5.2e-283 977.6 726 65.3
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 5.2e-283 977.6 734 64.4
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 6.8e-283 977.2 734 65.0
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 1.2e-282 976.5 734 65.1
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 1.2e-282 976.5 734 64.9
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 1.2e-282 976.5 734 64.9
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 1.5e-282 976.1 736 65.1
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 2.0e-282 975.7 735 64.5
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 2.0e-282 975.7 734 65.3
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 2.6e-282 975.3 726 65.0
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 3.4e-282 974.9 735 64.9
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 5.7e-282 974.2 735 64.6
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 9.8e-282 973.4 735 64.8
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 9.8e-282 973.4 734 65.0
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 9.8e-282 973.4 734 64.6
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 1.3e-281 973.0 693 66.5
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 1.3e-281 973.0 735 65.0
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 1.3e-281 973.0 736 64.8
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 1.7e-281 972.6 735 64.9
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 6.4e-281 970.7 735 64.5
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 6.4e-281 970.7 735 64.5
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 8.3e-281 970.3 746 64.3
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 8.3e-281 970.3 738 64.1
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 2.4e-280 968.8 736 63.9
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 2.4e-280 968.8 734 65.1
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 3.2e-280 968.4 739 63.9
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 3.2e-280 968.4 736 64.4
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 4.1e-280 968.0 736 64.3
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 5.4e-280 967.6 736 64.9
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 7.0e-280 967.2 735 64.4
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 9.2e-280 966.8 736 64.3
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 1.6e-279 966.1 731 64.4
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 2.0e-279 965.7 726 65.0
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 2.0e-279 965.7 736 64.3
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 2.0e-279 965.7 692 66.8
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 2.7e-279 965.3 735 64.6
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 4.6e-279 964.5 738 64.2
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 5.9e-279 964.1 730 64.5
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 7.8e-279 963.8 777 61.8
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 3.0e-278 961.8 696 65.9
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 3.0e-278 961.8 778 61.8
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 6.6e-278 960.7 735 63.7
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 1.1e-277 959.9 734 64.0
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 4.7e-276 954.5 736 63.6
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 4.7e-276 954.5 752 62.9
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 4.7e-276 954.5 726 64.3
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 8.0e-276 953.7 741 62.2
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 1.8e-275 952.6 723 63.3
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 4.0e-275 951.4 751 63.2
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 1.3e-273 946.4 783 60.4
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 1.3e-273 946.4 783 60.4
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 8.3e-273 943.7 724 63.1
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 1.2e-271 939.9 692 64.7
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 2.3e-270 935.6 692 65.6
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 3.9e-270 934.9 747 62.4
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 5.0e-270 934.5 747 62.5
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 5.0e-270 934.5 786 60.6
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 5.6e-269 931.0 746 62.5
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 8.1e-268 927.2 736 63.3
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 8.9e-267 923.7 832 57.3
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 4.9e-265 917.9 661 66.7
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 6.4e-265 917.5 665 65.7
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 1.9e-264 916.0 739 61.8
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 1.0e-262 910.2 746 61.0
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 8.1e-260 900.6 726 61.6
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 2.3e-259 899.0 735 61.4
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 2.3e-259 899.0 719 61.5
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 2.2e-257 892.5 698 61.2
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 1.6e-255 886.3 736 61.1
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 3.6e-252 875.2 735 59.7
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 4.7e-252 874.8 670 63.9
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 8.7e-246 854.0 618 67.0
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 7.6e-242 840.9 618 66.2
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 1.2e-239 833.6 694 58.9
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 1.5e-237 826.6 784 55.5
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 1.3e-230 803.5 756 57.3
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 3.9e-230 802.0 586 66.6
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 6.7e-230 801.2 735 55.8
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 4.3e-221 771.9 694 56.8
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 1.3e-217 760.4 575 67.1
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 1.9e-213 746.5 698 55.0
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 2.2e-188 663.3 509 65.4
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 1.7e-161 573.9 504 57.3
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 3.2e-155 553.1 420 62.6
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.7e-145 520.8 424 60.1
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 1.3e-124 451.4 366 59.0
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.4e-118 431.4 355 60.6
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 1.2e-117 428.3 300 69.0
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 8.4e-116 422.2 317 67.5
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 7.9e-106 389.0 298 64.4
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.3e-105 388.3 341 58.4
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.5e-96 358.2 280 62.9
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 2.6e-93 347.4 362 53.9
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.6e-74 285.0 306 50.7
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.4e-70 271.9 218 60.1
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 1.9e-67 261.5 405 41.2
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 9.4e-67 259.2 183 62.8
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 9.1e-62 242.7 220 57.3
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 4.7e-58 230.3 202 57.4
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 2.0e-56 224.9 179 60.3
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 7.3e-51 206.5 165 61.8
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 5.2e-49 200.3 175 52.0
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 3.2e-46 191.0 355 36.6
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 7.3e-35 153.3 165 50.9
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 2.7e-29 134.8 204 42.6
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 4.6e-29 134.0 118 50.8
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 1.9e-27 128.6 99 53.5
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 9.2e-22 109.8 106 50.0
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 2.3e-20 105.1 80 57.5
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 6.6e-20 103.6 61 70.5
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 3.1e-17 94.7 165 35.8
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 9.0e-17 93.2 165 35.8
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 1.2e-16 92.8 161 37.9
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 2.2e-15 88.6 60 70.0
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 1.4e-14 85.9 88 46.6
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 1.2e-13 82.8 42 83.3
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 1.9e-11 75.5 76 48.7
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 1.9e-11 75.5 132 40.9
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 5.6e-11 73.9 50 76.0
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 2.1e-10 72.0 107 43.0
Nitab4.5_0000050g0220 Nicotiana tabacum HOM05D003895 ORTHO05D285100 6.4e-07 60.5 44 77.3
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 1.4e-06 59.3 92 42.4
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 2.4e-06 58.5 74 48.6


User provided reference genes

Program Settings