Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0035s0035 Marchantia polymorpha HOM05D004117 ORTHO05D256391 0.0e+00 1094.3 560 100.0
Aqoxy1G01993 Aquilegia oxysepala HOM05D004117 ORTHO05D004520 7.5e-24 116.3 207 32.9
C08p02610 Brassica napus HOM05D004117 ORTHO05D004520 1.7e-23 115.2 240 30.4
Nn3g21103 Nelumbo nucifera HOM05D004117 ORTHO05D004520 1.7e-23 115.2 211 33.2
AL1G16480 Arabidopsis lyrata HOM05D004117 ORTHO05D004520 2.2e-23 114.8 240 30.0
AT1G06470 Arabidopsis thaliana HOM05D004117 ORTHO05D004520 3.7e-23 114.0 240 30.0
CARHR006080 Cardamine hirsuta HOM05D004117 ORTHO05D004520 4.9e-23 113.6 240 30.4
BolC5t29244H Brassica oleracea HOM05D004117 ORTHO05D004520 6.3e-23 113.2 240 30.4
BraA10t42778Z Brassica rapa HOM05D004117 ORTHO05D004520 6.3e-23 113.2 240 30.4
BolC8t47054H Brassica oleracea HOM05D004117 ORTHO05D004520 8.3e-23 112.8 240 30.0
Carub.0001s0583 Capsella rubella HOM05D004117 ORTHO05D004520 8.3e-23 112.8 240 30.4
Ah.01g016090 Amaranthus hybridus HOM05D004117 ORTHO05D004520 1.8e-22 111.7 204 32.8
A10p05130 Brassica napus HOM05D004117 ORTHO05D004520 1.8e-22 111.7 240 30.0
Pp3c3_5740 Physcomitrium patens HOM05D004117 ORTHO05D004520 1.8e-22 111.7 205 34.6
Thhalv10007752m.g Eutrema salsugineum HOM05D004117 ORTHO05D004520 3.1e-22 110.9 240 30.0
RcHm_v2.0_Chr2g0131361 Rosa chinensis HOM05D004117 ORTHO05D004520 3.1e-22 110.9 212 30.7
FvH4_6g27881 Fragaria vesca HOM05D004117 ORTHO05D004520 4.1e-22 110.5 212 30.7
Sp1g05230 Schrenkiella parvula HOM05D004117 ORTHO05D004520 4.1e-22 110.5 240 29.6
Duzib264G0691 Durio zibethinus HOM05D004117 ORTHO05D004520 5.4e-22 110.2 218 31.7
Sc21g0004310 Simmondsia chinensis HOM05D004117 ORTHO05D004520 5.4e-22 110.2 206 32.5
BcaB03g13416 Brassica carinata HOM05D004117 ORTHO05D004520 7.0e-22 109.8 240 29.6
A08p35950 Brassica napus HOM05D004117 ORTHO05D004520 7.0e-22 109.8 240 29.6
Manes.01G129950 Manihot esculenta HOM05D004117 ORTHO05D004520 9.2e-22 109.4 211 32.2
Sed0017214 Sechium edule HOM05D004117 ORTHO05D004520 9.2e-22 109.4 220 31.4
Lj6g0002139 Lotus japonicus HOM05D004117 ORTHO05D004520 1.2e-21 109.0 206 32.0
C05p04720 Brassica napus HOM05D004117 ORTHO05D004520 2.0e-21 108.2 240 30.0
Dinv03089 Davidia involucrata HOM05D004117 ORTHO05D004520 2.0e-21 108.2 212 31.1
Gohir.D11G064000 Gossypium hirsutum HOM05D004117 ORTHO05D004520 2.0e-21 108.2 213 30.5
Potri.006G278700 Populus trichocarpa HOM05D004117 ORTHO05D004520 2.0e-21 108.2 211 32.2
Ah.01g004740 Amaranthus hybridus HOM05D004117 ORTHO05D004520 2.7e-21 107.8 239 31.8
CSS0026162 Camellia sinensis var. sinensis HOM05D004117 ORTHO05D004520 2.7e-21 107.8 206 31.6
Gohir.A11G059900 Gossypium hirsutum HOM05D004117 ORTHO05D004520 2.7e-21 107.8 213 30.0
MD09G1233800 Malus domestica HOM05D004117 ORTHO05D004520 2.7e-21 107.8 218 31.2
Thecc.01G156100 Theobroma cacao HOM05D004117 ORTHO05D004520 2.7e-21 107.8 206 31.6
HPP92_009031 Vanilla planifolia HOM05D004117 ORTHO05D004520 2.7e-21 107.8 206 29.6
Gorai.007G069200 Gossypium raimondii HOM05D004117 ORTHO05D004520 3.5e-21 107.5 213 30.5
Prupe.3G108900 Prunus persica HOM05D004117 ORTHO05D004520 3.5e-21 107.5 212 30.7
Duzib147G1030 Durio zibethinus HOM05D004117 ORTHO05D004520 4.5e-21 107.1 206 31.6
Dinv11422 Davidia involucrata HOM05D004117 ORTHO05D004520 5.9e-21 106.7 206 32.0
Lalb_Chr10g0106881 Lupinus albus HOM05D004117 ORTHO05D004520 5.9e-21 106.7 206 31.1
BcaC07g36811 Brassica carinata HOM05D004117 ORTHO05D004520 7.8e-21 106.3 244 29.5
Lsat_1_v5_gn_8_31821 Lactuca sativa HOM05D004117 ORTHO05D004520 7.8e-21 106.3 210 31.0
Manes.02G087500 Manihot esculenta HOM05D004117 ORTHO05D004520 7.8e-21 106.3 229 29.3
GSVIVG01020780001 Vitis vinifera HOM05D004117 ORTHO05D004520 7.8e-21 106.3 204 29.9
Zm00001eb370980 Zea mays HOM05D004117 ORTHO05D004520 7.8e-21 106.3 213 30.0
SGA_v2.0_scaffold46G17443 Striga asiatica HOM05D004117 ORTHO05D004520 1.3e-20 105.5 206 31.1
Os01g0749900 Oryza sativa ssp. japonica HOM05D004117 ORTHO05D004520 1.7e-20 105.1 244 27.9
PGR042G1715 Punica granatum HOM05D004117 ORTHO05D004520 1.7e-20 105.1 204 30.9
PSO675G6070 Papaver somniferum HOM05D004117 ORTHO05D004520 2.3e-20 104.8 210 31.0
CiPaw.04G134900 Carya illinoinensis HOM05D004117 ORTHO05D004520 2.9e-20 104.4 212 30.2
Nn6g34497 Nelumbo nucifera HOM05D004117 ORTHO05D004520 2.9e-20 104.4 206 31.1
Sopen12g006350 Solanum pennellii HOM05D004117 ORTHO05D004520 2.9e-20 104.4 212 30.7
PSO541G2160 Papaver somniferum HOM05D004117 ORTHO05D004520 3.9e-20 104.0 203 31.0
CsaV3_6G037880 Cucumis sativus L. HOM05D004117 ORTHO05D004520 5.0e-20 103.6 207 30.9
HanXRQChr12g0367511 Helianthus annuus HOM05D004117 ORTHO05D004520 5.0e-20 103.6 210 30.5
HPP92_000571 Vanilla planifolia HOM05D004117 ORTHO05D004520 5.0e-20 103.6 206 31.6
FAN02G0254 Fragaria x ananassa HOM05D004117 ORTHO05D004520 6.6e-20 103.2 214 30.4
ECA234G3208 Erigeron canadensis HOM05D004117 ORTHO05D004520 8.6e-20 102.8 206 30.1
arahy.Tifrunner.gnm1.ann1.A5IPPM Arachis hypogaea HOM05D004117 ORTHO05D004520 1.1e-19 102.4 206 31.1
Migut.M00208 Erythranthe guttata HOM05D004117 ORTHO05D004520 1.1e-19 102.4 206 30.6
MD17G1230200 Malus domestica HOM05D004117 ORTHO05D004520 1.1e-19 102.4 224 28.6
BraA08t35503Z Brassica rapa HOM05D004117 ORTHO05D004520 1.9e-19 101.7 248 28.2
THA.LOC104800830 Tarenaya hassleriana HOM05D004117 ORTHO05D004520 1.9e-19 101.7 206 31.1
Zm00001eb270990 Zea mays HOM05D004117 ORTHO05D004520 1.9e-19 101.7 203 29.6
FAN14G3113 Fragaria x ananassa HOM05D004117 ORTHO05D004520 2.5e-19 101.3 221 29.4
Gohir.D04G039266 Gossypium hirsutum HOM05D004117 ORTHO05D004520 2.5e-19 101.3 214 30.8
Gorai.012G044300 Gossypium raimondii HOM05D004117 ORTHO05D004520 2.5e-19 101.3 214 30.8
Gohir.A05G376700 Gossypium hirsutum HOM05D004117 ORTHO05D004520 3.3e-19 100.9 214 30.8
Actinidia11177 Actinidia chinensis HOM05D004117 ORTHO05D004520 4.3e-19 100.5 206 30.1
CAN.G486.15 Capsicum annuum HOM05D004117 ORTHO05D004520 7.3e-19 99.8 218 28.9
Sopen07g029060 Solanum pennellii HOM05D004117 ORTHO05D004520 7.3e-19 99.8 206 29.6
Lj1C629G7 Lonicera japonica HOM05D004117 ORTHO05D004520 9.5e-19 99.4 219 30.1
ECA233G4030 Erigeron canadensis HOM05D004117 ORTHO05D004520 1.2e-18 99.0 210 30.0
Glyma.09G101300 Glycine max HOM05D004117 ORTHO05D004520 1.2e-18 99.0 206 31.1
Glyma.18G102500 Glycine max HOM05D004117 ORTHO05D004520 1.2e-18 99.0 206 31.1
FAN05G5128 Fragaria x ananassa HOM05D004117 ORTHO05D004520 1.6e-18 98.6 221 28.5
Mapoly0038s0060 Marchantia polymorpha HOM05D004117 ORTHO05D004520 1.6e-18 98.6 233 28.8
Sc12g0003810 Simmondsia chinensis HOM05D004117 ORTHO05D004520 1.6e-18 98.6 204 30.9
Atru.chr6.3571 Acer truncatum HOM05D004117 ORTHO05D004520 2.1e-18 98.2 200 31.0
Hma1.2p1_0178F.1_g078380 Hydrangea macrophylla HOM05D004117 ORTHO05D004520 2.1e-18 98.2 206 30.6
VMungo0540G1454 Vigna mungo HOM05D004117 ORTHO05D004520 2.8e-18 97.8 206 30.1
Zm00001eb376680 Zea mays HOM05D004117 ORTHO05D004520 2.8e-18 97.8 222 27.9
arahy.Tifrunner.gnm1.ann1.X0GQC6 Arachis hypogaea HOM05D004117 ORTHO05D004520 3.6e-18 97.4 207 31.4
Phvul.006G038200 Phaseolus vulgaris HOM05D004117 ORTHO05D004520 3.6e-18 97.4 228 29.4
BcaB02g06797 Brassica carinata HOM05D004117 ORTHO05D004520 4.7e-18 97.1 240 30.0
Lsat_1_v5_gn_4_26681 Lactuca sativa HOM05D004117 ORTHO05D004520 4.7e-18 97.1 206 29.1
Psat4g191560 Pisum sativum HOM05D004117 ORTHO05D004520 6.1e-18 96.7 206 30.1
Oeu028661.1 Olea europaea HOM05D004117 ORTHO05D004520 1.4e-17 95.5 210 29.5
Migut.H02117 Erythranthe guttata HOM05D004117 ORTHO05D004520 1.8e-17 95.1 226 28.8
Lalb_Chr15g0080421 Lupinus albus HOM05D004117 ORTHO05D004520 1.8e-17 95.1 208 31.7
TPR.G22233 Trifolium pratense HOM05D004117 ORTHO05D004520 1.8e-17 95.1 206 30.1
Solyc07g055700.2 Solanum lycopersicum HOM05D004117 ORTHO05D004520 2.3e-17 94.7 206 29.1
Medtr8g016090 Medicago truncatula HOM05D004117 ORTHO05D004520 3.1e-17 94.4 204 29.9
Pp3c2_29630 Physcomitrium patens HOM05D004117 ORTHO05D004520 3.1e-17 94.4 218 30.7
SMO358G0570 Selaginella moellendorffii HOM05D004117 ORTHO05D004520 3.1e-17 94.4 200 31.0
HanXRQChr01g0028621 Helianthus annuus HOM05D004117 ORTHO05D004520 4.0e-17 94.0 204 28.9
CANSAT64G1854 Cannabis sativa HOM05D004117 ORTHO05D004520 5.2e-17 93.6 212 28.3
Eucgr.A01947 Eucalyptus grandis HOM05D004117 ORTHO05D004520 5.2e-17 93.6 178 31.5
Peaxi162Scf00807g00047 Petunia axillaris HOM05D004117 ORTHO05D004520 5.2e-17 93.6 227 28.2
SGA_v2.0_scaffold9G04867 Striga asiatica HOM05D004117 ORTHO05D004520 5.2e-17 93.6 234 27.8
EL10Ac9g21032 Beta vulgaris HOM05D004117 ORTHO05D004520 2.6e-16 91.3 244 28.3
Solyc12g010990.3 Solanum lycopersicum HOM05D004117 ORTHO05D004520 2.6e-16 91.3 229 28.8
Aa31LG1G7530 Aethionema arabicum HOM05D004117 ORTHO05D004520 3.4e-16 90.9 240 26.7
CDE09G0584 Ceratophyllum demersum HOM05D004117 ORTHO05D004520 2.9e-15 87.8 165 31.5
Ciclev10018149m.g Citrus clementina HOM05D004117 ORTHO05D004520 2.9e-15 87.8 176 33.5
Peaxi162Scf00154g01022 Petunia axillaris HOM05D004117 ORTHO05D004520 4.9e-15 87.0 221 27.1
Sabra06G0216200 Salix brachista HOM05D004117 ORTHO05D004520 3.2e-14 84.3 200 28.5
Oeu032129.1 Olea europaea HOM05D004117 ORTHO05D004520 4.1e-14 84.0 218 26.6
BcaC07g36812 Brassica carinata HOM05D004117 ORTHO05D004520 1.0e-12 79.3 240 25.8
Hund07729 Selenicereus undatus HOM05D004117 ORTHO05D004520 1.7e-12 78.6 218 27.5
unitig_62.g23113 Utricularia gibba HOM05D004117 ORTHO05D004520 1.1e-11 75.9 163 31.9
vmacro12418 Vaccinium macrocarpon HOM05D004117 ORTHO05D004520 1.2e-10 72.4 198 26.8
Haze_13436 Corylus avellana HOM05D004117 ORTHO05D004520 1.6e-10 72.0 150 31.3
arahy.Tifrunner.gnm1.ann1.EL27YX Arachis hypogaea HOM05D004117 ORTHO05D004520 4.7e-10 70.5 207 25.6
arahy.Tifrunner.gnm1.ann1.S8R0TP Arachis hypogaea HOM05D004117 ORTHO05D004520 1.4e-09 68.9 207 25.6
Hund00818 Selenicereus undatus HOM05D004117 ORTHO05D004520 1.8e-09 68.6 142 32.4
Zm00001eb153320 Zea mays HOM05D004117 ORTHO05D004520 8.9e-09 66.2 135 30.4
QL08p042883 Quercus lobata HOM05D004117 ORTHO05D004520 1.5e-08 65.5 141 28.4
MELO3C014450.2 Cucumis melo HOM05D004117 ORTHO05D004520 3.4e-08 64.3 136 27.9
ClCG09G020800 Citrullus lanatus HOM05D004117 ORTHO05D004520 5.8e-08 63.5 130 29.2
arahy.Tifrunner.gnm1.ann1.E1YPH0 Arachis hypogaea HOM05D004117 ORTHO05D004520 7.5e-08 63.2 190 25.8
ATR0857G001 Amborella trichopoda HOM05D004117 ORTHO05D004520 9.8e-08 62.8 131 31.3
PSO210G1462 Papaver somniferum HOM05D000753 ORTHO05D001988 2.9e-07 61.2 221 25.8
PSO210G3476 Papaver somniferum HOM05D000753 ORTHO05D001988 4.9e-07 60.5 221 25.8
Lalb_Chr12g0197931 Lupinus albus HOM05D000753 ORTHO05D001988 6.4e-07 60.1 214 26.6
CAN.G594.1 Capsicum annuum HOM05D000753 ORTHO05D001988 1.1e-06 59.3 212 25.9
Phvul.003G164100 Phaseolus vulgaris HOM05D000753 ORTHO05D001988 1.1e-06 59.3 212 25.9
Glyma.17G115200 Glycine max HOM05D000753 ORTHO05D001988 1.9e-06 58.5 212 25.9
Aqoxy7G03713 Aquilegia oxysepala HOM05D000753 ORTHO05D001988 2.4e-06 58.2 223 26.0
Glyma.13G167600 Glycine max HOM05D000753 ORTHO05D001988 2.4e-06 58.2 212 25.9
COL.COLO4_04753 Corchorus olitorius HOM05D000753 ORTHO05D001988 3.2e-06 57.8 203 25.6
Lalb_Chr07g0178941 Lupinus albus HOM05D000753 ORTHO05D001988 4.1e-06 57.4 214 26.6
Lalb_Chr13g0301891 Lupinus albus HOM05D000753 ORTHO05D001988 4.1e-06 57.4 214 26.2
Sc18g0000620 Simmondsia chinensis HOM05D000753 ORTHO05D001988 4.1e-06 57.4 212 25.9
Aqoxy7G02247 Aquilegia oxysepala HOM05D000753 ORTHO05D001988 7.0e-06 56.6 222 24.8
Ca_21685_v3 Cicer arietinum L. HOM05D000753 ORTHO05D001988 7.0e-06 56.6 211 25.1
PSO455G0245 Papaver somniferum HOM05D000753 ORTHO05D001988 7.0e-06 56.6 215 23.7
arahy.Tifrunner.gnm1.ann1.3SSI2G Arachis hypogaea HOM05D000753 ORTHO05D001988 9.2e-06 56.2 212 25.0
Medtr4g114360 Medicago truncatula HOM05D000753 ORTHO05D001988 9.2e-06 56.2 211 24.6
Psat4g039640 Pisum sativum HOM05D000753 ORTHO05D001988 9.2e-06 56.2 211 24.6
SalBow8G2638 Salvia bowleyana HOM05D004117 ORTHO05D004520 9.2e-06 56.2 138 26.1


User provided reference genes

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