Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0035s0019 Marchantia polymorpha HOM05D007819 ORTHO05D009848 3.7e-280 967.6 506 100.0
Mapoly0008s0213 Marchantia polymorpha HOM05D007819 ORTHO05D009848 1.3e-163 580.5 522 61.3
Mapoly0155s0016 Marchantia polymorpha HOM05D007819 ORTHO05D009848 1.8e-162 576.6 525 61.1
Pp3c15_22830 Physcomitrium patens HOM05D007819 ORTHO05D009848 8.5e-144 514.6 502 56.0
Pp3c9_23950 Physcomitrium patens HOM05D007819 ORTHO05D009848 1.0e-141 507.7 501 53.9
AagrBONN_evm.TU.Sc2ySwM_344.1297 Anthoceros agrestis HOM05D007819 ORTHO05D009848 7.3e-135 485.0 536 53.0
AagrBONN_evm.TU.Sc2ySwM_344.3840 Anthoceros agrestis HOM05D007819 ORTHO05D009848 6.6e-128 461.8 442 55.7
COL.COLO4_25254 Corchorus olitorius HOM05D007819 ORTHO05D009848 1.7e-67 261.2 237 51.5
Gohir.A09G105900 Gossypium hirsutum HOM05D007819 ORTHO05D009848 1.7e-67 261.2 249 48.6
Thecc.09G261200 Theobroma cacao HOM05D007819 ORTHO05D009848 5.0e-67 259.6 271 46.5
Nn2g10668 Nelumbo nucifera HOM05D007819 ORTHO05D009848 6.5e-67 259.2 251 49.4
Sopen06g001100 Solanum pennellii HOM05D007819 ORTHO05D009848 6.5e-67 259.2 254 49.2
TWI75G0698 Tripterygium wilfordii HOM05D007819 ORTHO05D009848 1.1e-66 258.5 251 48.6
PSO384G2242 Papaver somniferum HOM05D007819 ORTHO05D009848 2.5e-66 257.3 263 45.2
Atru.chr3.3713 Acer truncatum HOM05D007819 ORTHO05D009848 3.2e-66 256.9 250 48.0
Gohir.D09G102600 Gossypium hirsutum HOM05D007819 ORTHO05D009848 3.2e-66 256.9 249 47.8
Gorai.006G121000 Gossypium raimondii HOM05D007819 ORTHO05D009848 3.2e-66 256.9 249 47.8
Cpa.g.sc318.6 Carica papaya HOM05D007819 ORTHO05D009848 4.2e-66 256.5 256 49.6
PSO339G1273 Papaver somniferum HOM05D007819 ORTHO05D009848 4.2e-66 256.5 263 44.9
PGR102G1079 Punica granatum HOM05D007819 ORTHO05D009848 4.2e-66 256.5 250 50.0
TAR623G0280 Trochodendron aralioides HOM05D007819 ORTHO05D009848 4.2e-66 256.5 257 47.5
CANSAT54G2163 Cannabis sativa HOM05D007819 ORTHO05D009848 1.6e-65 254.6 252 48.4
Oeu017391.1 Olea europaea HOM05D007819 ORTHO05D009848 1.6e-65 254.6 256 46.1
Manes.04G025500 Manihot esculenta HOM05D007819 ORTHO05D009848 3.6e-65 253.4 251 48.6
Duzib168G1088 Durio zibethinus HOM05D007819 ORTHO05D009848 5.1e-64 249.6 264 46.6
FAN21G3467 Fragaria x ananassa HOM05D007819 ORTHO05D009848 1.5e-63 248.1 251 47.4
Migut.N02626 Erythranthe guttata HOM05D007819 ORTHO05D009848 2.5e-63 247.3 256 45.7
Eucgr.B02464 Eucalyptus grandis HOM05D007819 ORTHO05D009848 2.5e-63 247.3 246 47.2
FAN25G2530 Fragaria x ananassa HOM05D007819 ORTHO05D009848 7.4e-63 245.7 251 47.0
RcHm_v2.0_Chr5g0060991 Rosa chinensis HOM05D007819 ORTHO05D009848 9.7e-63 245.4 251 47.4
CiPaw.13G106200 Carya illinoinensis HOM05D007819 ORTHO05D009848 1.6e-62 244.6 254 43.7
Gohir.D05G077600 Gossypium hirsutum HOM05D007819 ORTHO05D009848 3.7e-62 243.4 248 45.6
Gorai.009G079100 Gossypium raimondii HOM05D007819 ORTHO05D009848 3.7e-62 243.4 248 45.6
CiPaw.14G077700 Carya illinoinensis HOM05D007819 ORTHO05D009848 6.3e-62 242.7 243 46.9
MD11G1124900 Malus domestica HOM05D007819 ORTHO05D009848 8.2e-62 242.3 248 46.0
Cc01_g11630 Coffea canephora HOM05D007819 ORTHO05D009848 1.1e-61 241.9 240 46.7
Gohir.A05G074800 Gossypium hirsutum HOM05D007819 ORTHO05D009848 1.4e-61 241.5 248 45.6
Mapoly0103s0031 Marchantia polymorpha HOM05D007819 ORTHO05D009848 1.4e-61 241.5 254 48.8
Gohir.A05G074866 Gossypium hirsutum HOM05D007819 ORTHO05D009848 5.9e-60 236.1 248 44.8
Lsat_1_v5_gn_2_25861 Lactuca sativa HOM05D007819 ORTHO05D009848 8.5e-59 232.3 243 46.1
MD03G1111000 Malus domestica HOM05D007819 ORTHO05D009848 3.2e-58 230.3 248 44.8
Hma1.2p1_2033F.1_g311900 Hydrangea macrophylla HOM05D007819 ORTHO05D009848 2.1e-57 227.6 243 46.5
Nitab4.5_0007369g0010 Nicotiana tabacum HOM05D007819 ORTHO05D009848 2.1e-57 227.6 274 42.0
QL01p036876 Quercus lobata HOM05D007819 ORTHO05D009848 3.0e-56 223.8 247 44.1
Nitab4.5_0000888g0180 Nicotiana tabacum HOM05D007819 ORTHO05D009848 3.9e-56 223.4 267 41.9
DCAR_005475 Daucus carota HOM05D007819 ORTHO05D009848 5.1e-56 223.0 217 48.8
Pp3c21_1570 Physcomitrium patens HOM05D007819 ORTHO05D009848 8.8e-56 222.2 256 46.1
CiPaw.13G106300 Carya illinoinensis HOM05D007819 ORTHO05D009848 9.7e-55 218.8 234 45.7
CiPaw.14G077600 Carya illinoinensis HOM05D007819 ORTHO05D009848 1.1e-53 215.3 258 38.8
Mapoly0088s0067 Marchantia polymorpha HOM05D000370 ORTHO05D001335 9.1e-53 212.2 252 40.9
Pp3c12_18930 Physcomitrium patens HOM05D000370 ORTHO05D009848 9.1e-53 212.2 264 42.0
Pp3c12_18938 Physcomitrium patens HOM05D000370 ORTHO05D009848 9.1e-53 212.2 264 42.0
HPP92_025075 Vanilla planifolia HOM05D007819 ORTHO05D009848 1.5e-52 211.5 269 39.0
unitig_699.g19198 Utricularia gibba HOM05D007819 ORTHO05D009848 4.5e-52 209.9 256 39.1
FAN16G1444 Fragaria x ananassa HOM05D007819 ORTHO05D009848 1.0e-51 208.8 325 36.0
Pp3c3_24540 Physcomitrium patens HOM05D007819 ORTHO05D009848 1.3e-51 208.4 264 42.0
AUR62006507 Chenopodium quinoa HOM05D007819 ORTHO05D009848 1.7e-51 208.0 274 39.8
FvH4_3g33520 Fragaria vesca HOM05D007819 ORTHO05D009848 8.5e-51 205.7 211 48.3
Zm00001eb013150 Zea mays HOM05D007819 ORTHO05D009848 1.9e-50 204.5 257 40.5
Sc21g0003720 Simmondsia chinensis HOM05D007819 ORTHO05D009848 2.1e-49 201.1 212 47.2
Lj1A183T52 Lonicera japonica HOM05D007819 ORTHO05D009848 3.0e-48 197.2 252 42.9
Haze_23935 Corylus avellana HOM05D007819 ORTHO05D009848 7.4e-47 192.6 203 46.8
Prupe.6G093600 Prunus persica HOM05D007819 ORTHO05D009848 3.1e-45 187.2 183 49.2
Peaxi162Scf00389g00619 Petunia axillaris HOM05D007819 ORTHO05D009848 3.8e-43 180.3 240 40.8
Ciclev10029813m.g Citrus clementina HOM05D007819 ORTHO05D009848 1.6e-41 174.9 243 37.4
Solyc06g005100.3 Solanum lycopersicum HOM05D007819 ORTHO05D009848 3.6e-41 173.7 169 48.5
Nitab4.5_0001578g0010 Nicotiana tabacum HOM05D007819 ORTHO05D009848 1.8e-40 171.4 230 39.1
Nitab4.5_0000022g0250 Nicotiana tabacum HOM05D007819 ORTHO05D009848 1.3e-38 165.2 211 43.6
Dinv32800 Davidia involucrata HOM05D007819 ORTHO05D009848 2.2e-38 164.5 189 41.8
SGA_v2.0_scaffold2G00920 Striga asiatica HOM05D007819 ORTHO05D009848 5.3e-37 159.8 234 35.5
CAN.G1171.1 Capsicum annuum HOM05D007819 ORTHO05D009848 1.7e-35 154.8 239 38.9
GSVIVG01025124001 Vitis vinifera HOM05D007819 ORTHO05D009848 2.2e-35 154.5 156 49.4
MSTRG.12613 Avicennia marina HOM05D007819 ORTHO05D009848 5.7e-31 139.8 158 43.7
PGSC0003DMG401025397 Solanum tuberosum HOM05D007819 ORTHO05D009848 1.8e-29 134.8 155 45.8
AUR62025022 Chenopodium quinoa HOM05D007819 ORTHO05D009848 9.1e-29 132.5 202 38.6
Migut.O00707 Erythranthe guttata HOM05D007819 ORTHO05D009848 2.8e-25 120.9 94 53.2
MSTRG.12612 Avicennia marina HOM05D007819 ORTHO05D009848 3.5e-20 104.0 99 49.5
SalBow3G4000 Salvia bowleyana HOM05D007819 ORTHO05D009848 2.9e-19 100.9 97 47.4
EL10Ac9g22426 Beta vulgaris HOM05D007819 ORTHO05D009848 1.9e-18 98.2 118 40.7
Oeu012676.1 Olea europaea HOM05D007819 ORTHO05D009848 3.6e-17 94.0 81 48.1
CSS0001112 Camellia sinensis var. sinensis HOM05D007819 ORTHO05D009848 6.1e-17 93.2 98 48.0
CSS0025937 Camellia sinensis var. sinensis HOM05D007819 ORTHO05D009848 6.1e-17 93.2 98 48.0
QL01p036766 Quercus lobata HOM05D007819 ORTHO05D009848 6.1e-17 93.2 91 48.4
Os03g0287100 Oryza sativa ssp. japonica HOM05D007819 ORTHO05D009848 2.3e-16 91.3 106 44.3
AagrBONN_evm.TU.Sc2ySwM_117.2524 Anthoceros agrestis HOM05D007819 ORTHO05D009848 5.2e-16 90.1 58 67.2
QL01p036758 Quercus lobata HOM05D007819 ORTHO05D009848 8.9e-16 89.4 89 49.4
EL10Ac9g22427 Beta vulgaris HOM05D007819 ORTHO05D009848 1.4e-08 65.5 122 32.0


User provided reference genes

Program Settings