Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 0.0e+00 1160.2 592 100.0
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 5.5e-150 535.4 557 51.7
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 9.7e-131 471.5 557 46.1
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 6.3e-130 468.8 514 50.0
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 1.2e-125 454.5 559 44.7
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 7.4e-123 445.3 572 43.9
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 3.7e-122 443.0 571 44.1
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 5.3e-121 439.1 518 45.9
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.6e-120 437.6 518 45.8
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 2.0e-120 437.2 521 47.0
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 4.5e-120 436.0 516 45.7
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 7.7e-120 435.3 516 45.7
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 1.0e-119 434.9 538 44.2
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 1.3e-119 434.5 566 44.7
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 1.7e-119 434.1 556 44.1
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 1.7e-119 434.1 553 42.7
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 6.5e-119 432.2 560 44.6
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 6.5e-119 432.2 534 44.8
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 1.1e-118 431.4 553 42.3
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 1.1e-118 431.4 522 43.7
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 1.9e-118 430.6 524 45.8
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 4.2e-118 429.5 587 41.9
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 5.5e-118 429.1 516 45.2
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 1.6e-117 427.6 594 40.7
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 1.6e-117 427.6 534 44.9
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 2.1e-117 427.2 587 42.1
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 1.0e-116 424.9 514 43.8
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 1.0e-116 424.9 586 41.6
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.4e-116 424.5 537 43.4
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 1.4e-116 424.5 516 44.4
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 2.3e-116 423.7 537 43.8
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 6.8e-116 422.2 537 42.6
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 8.8e-116 421.8 562 43.2
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 1.2e-115 421.4 520 44.8
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 2.6e-115 420.2 541 43.8
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 5.7e-115 419.1 534 43.3
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 5.7e-115 419.1 537 43.4
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 7.5e-115 418.7 517 44.1
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 7.5e-115 418.7 562 42.7
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 9.8e-115 418.3 515 44.1
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 1.7e-114 417.5 517 44.1
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 2.2e-114 417.2 573 42.2
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 3.7e-114 416.4 529 44.4
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 3.7e-114 416.4 523 42.8
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 4.8e-114 416.0 541 42.9
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 6.3e-114 415.6 565 41.8
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 1.4e-113 414.5 542 44.5
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 1.4e-113 414.5 515 45.2
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 2.4e-113 413.7 535 43.0
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 5.4e-113 412.5 514 44.4
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 7.0e-113 412.1 558 42.5
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 1.2e-112 411.4 589 40.6
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 1.6e-112 411.0 515 43.9
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 1.6e-112 411.0 523 42.3
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 2.0e-112 410.6 541 43.6
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 2.7e-112 410.2 512 43.8
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 3.5e-112 409.8 544 44.1
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 3.5e-112 409.8 544 43.2
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 5.9e-112 409.1 571 41.0
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 1.0e-111 408.3 548 43.2
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 1.0e-111 408.3 516 43.0
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 2.2e-111 407.1 557 42.7
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 2.2e-111 407.1 542 42.3
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 2.9e-111 406.8 598 41.3
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 5.0e-111 406.0 470 46.4
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 8.5e-111 405.2 516 43.6
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 8.5e-111 405.2 542 43.2
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 1.1e-110 404.8 528 43.6
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 1.5e-110 404.4 518 43.8
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 1.9e-110 404.1 568 40.1
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 3.2e-110 403.3 540 43.0
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 7.2e-110 402.1 544 41.5
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 9.4e-110 401.7 568 40.0
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 1.2e-109 401.4 535 41.9
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 1.2e-109 401.4 533 41.3
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 1.2e-109 401.4 544 41.0
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 4.7e-109 399.4 516 42.6
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 4.7e-109 399.4 523 42.8
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 8.0e-109 398.7 517 42.4
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 8.0e-109 398.7 555 40.7
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 5.2e-108 396.0 532 42.1
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 6.8e-108 395.6 532 41.9
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 8.8e-108 395.2 517 42.4
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 1.2e-107 394.8 533 42.0
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 5.7e-107 392.5 572 39.9
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 9.8e-107 391.7 519 42.4
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 2.2e-106 390.6 576 39.6
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 3.1e-105 386.7 511 42.9
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 5.5e-102 375.9 488 44.3
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 4.7e-101 372.9 504 44.6
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 1.7e-98 364.4 490 41.0
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 1.6e-96 357.8 466 44.2
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 1.5e-94 351.3 734 32.4
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 2.8e-93 347.1 481 40.7
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 6.1e-93 345.9 540 39.6
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 2.3e-92 344.0 575 37.7
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.2e-91 341.7 348 51.4
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 7.5e-91 339.0 539 38.4
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.7e-90 337.8 592 38.5
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 2.2e-90 337.4 366 45.1
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 7.8e-88 328.9 590 36.4
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 5.0e-87 326.2 300 56.0
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 6.6e-87 325.9 534 37.3
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 1.5e-83 314.7 573 34.9
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 8.3e-82 308.9 449 41.2
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 2.9e-58 230.7 210 56.2
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 4.3e-54 216.9 363 35.3
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 6.9e-52 209.5 354 33.6
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 1.6e-48 198.4 214 51.4
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 1.4e-41 175.3 177 52.5
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 3.3e-38 164.1 341 30.8
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.4e-33 148.7 123 58.5
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 3.5e-32 144.1 313 31.6
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 2.9e-26 124.4 378 29.4
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 3.2e-25 120.9 113 60.2
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 7.9e-24 116.3 574 23.5
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 5.7e-22 110.2 105 48.6
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 2.2e-21 108.2 243 30.5
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.0e-18 99.4 257 25.7
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.4e-17 95.5 191 30.9
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 3.9e-15 87.4 69 55.1
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 2.0e-14 85.1 130 37.7
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 2.8e-13 81.3 92 40.2
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.1e-12 79.3 165 29.7
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 5.9e-11 73.6 137 40.9
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 5.5e-09 67.0 123 30.9
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 2.1e-08 65.1 103 34.0
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.0e-07 62.8 101 34.7
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 1.5e-06 58.9 433 21.2


User provided reference genes

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