Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 3.7e-106 388.3 204 100.0
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 2.8e-29 132.9 175 47.4
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 5.9e-27 125.2 159 45.3
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 5.7e-22 108.6 172 42.4
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 3.1e-20 102.8 104 52.9
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 3.1e-20 102.8 104 52.9
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 4.1e-20 102.4 117 52.1
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 5.3e-20 102.1 95 58.9
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 7.0e-20 101.7 113 55.8
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 1.2e-19 100.9 103 52.4
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 2.6e-19 99.8 125 50.4
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 2.6e-19 99.8 101 53.5
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 4.5e-19 99.0 113 52.2
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 4.5e-19 99.0 105 52.4
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 5.9e-19 98.6 106 55.7
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 5.9e-19 98.6 86 59.3
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 5.9e-19 98.6 86 58.1
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 5.9e-19 98.6 109 52.3
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 1.0e-18 97.8 84 61.9
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 1.0e-18 97.8 84 61.9
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 1.0e-18 97.8 86 59.3
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 1.3e-18 97.4 99 54.5
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 1.7e-18 97.1 86 58.1
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 2.2e-18 96.7 85 60.0
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 2.2e-18 96.7 85 60.0
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 2.9e-18 96.3 96 56.2
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 2.9e-18 96.3 96 54.2
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 2.9e-18 96.3 95 56.8
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 2.9e-18 96.3 84 58.3
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 3.8e-18 95.9 114 50.0
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 3.8e-18 95.9 106 53.8
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 3.8e-18 95.9 125 44.8
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 3.8e-18 95.9 125 44.8
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 3.8e-18 95.9 107 53.3
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 3.8e-18 95.9 98 52.0
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 8.5e-18 94.7 84 58.3
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 8.5e-18 94.7 150 42.7
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 8.5e-18 94.7 105 49.5
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 1.1e-17 94.4 106 53.8
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 1.1e-17 94.4 91 57.1
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 1.1e-17 94.4 91 57.1
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 1.1e-17 94.4 91 57.1
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 1.1e-17 94.4 84 57.1
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 1.1e-17 94.4 179 40.2
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 1.1e-17 94.4 86 57.0
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 1.1e-17 94.4 113 47.8
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 1.5e-17 94.0 106 52.8
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 1.5e-17 94.0 83 59.0
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 1.5e-17 94.0 91 57.1
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 1.5e-17 94.0 110 50.9
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 1.9e-17 93.6 149 44.3
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 1.9e-17 93.6 105 49.5
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 1.9e-17 93.6 105 49.5
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 1.9e-17 93.6 91 56.0
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 2.5e-17 93.2 113 50.4
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 2.5e-17 93.2 91 57.1
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 2.5e-17 93.2 110 50.0
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 2.5e-17 93.2 91 53.8
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 2.5e-17 93.2 97 54.6
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 2.5e-17 93.2 102 52.0
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 2.5e-17 93.2 97 54.6
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 3.2e-17 92.8 113 47.8
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 3.2e-17 92.8 127 44.9
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 3.2e-17 92.8 94 55.3
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 3.2e-17 92.8 84 56.0
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 4.2e-17 92.4 91 54.9
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 4.2e-17 92.4 97 52.6
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 4.2e-17 92.4 84 57.1
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 4.2e-17 92.4 127 44.9
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 4.2e-17 92.4 96 51.0
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 4.2e-17 92.4 112 48.2
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 5.5e-17 92.0 116 48.3
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 5.5e-17 92.0 76 61.8
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 5.5e-17 92.0 103 50.5
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 7.2e-17 91.7 109 46.8
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 7.2e-17 91.7 108 47.2
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 9.4e-17 91.3 176 38.1
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 1.2e-16 90.9 146 42.5
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 1.2e-16 90.9 102 49.0
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.2e-16 90.9 84 57.1
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 1.6e-16 90.5 127 44.1
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 2.1e-16 90.1 101 48.5
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 2.7e-16 89.7 105 47.6
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.7e-16 89.7 102 49.0
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 2.7e-16 89.7 118 45.8
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 2.7e-16 89.7 86 54.7
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 2.7e-16 89.7 85 56.5
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 3.6e-16 89.4 121 44.6
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 3.6e-16 89.4 84 52.4
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 3.6e-16 89.4 86 53.5
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 3.6e-16 89.4 86 54.7
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 4.7e-16 89.0 84 53.6
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 4.7e-16 89.0 108 46.3
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 6.1e-16 88.6 133 39.1
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 8.0e-16 88.2 147 40.8
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 8.0e-16 88.2 102 47.1
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 8.0e-16 88.2 124 48.4
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 1.4e-15 87.4 100 50.0
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 1.4e-15 87.4 124 47.6
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 1.8e-15 87.0 112 43.8
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 2.3e-15 86.7 104 45.2
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 2.3e-15 86.7 98 49.0
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 2.3e-15 86.7 96 51.0
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 2.3e-15 86.7 119 45.4
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 2.3e-15 86.7 81 55.6
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 6.7e-15 85.1 79 57.0
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 1.2e-14 84.3 187 39.0
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 2.0e-14 83.6 113 46.9
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 2.6e-14 83.2 173 37.0
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 4.4e-14 82.4 172 36.6
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 9.7e-14 81.3 77 53.2
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 3.7e-13 79.3 83 50.6
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 8.2e-13 78.2 71 59.2
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 3.1e-12 76.3 185 35.1
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 4.1e-12 75.9 178 33.1
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 7.7e-11 71.6 73 53.4
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 7.7e-11 71.6 71 57.7
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 1.7e-10 70.5 108 38.0
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 6.1e-08 62.0 121 39.7
AagrBONN_evm.TU.Sc2ySwM_368.656 Anthoceros agrestis HOM05D005889 ORTHO05D007495 3.0e-07 59.7 77 42.9


User provided reference genes

Program Settings