Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 3.9e-131 471.5 238 100.0
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 9.5e-45 184.5 120 72.5
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 2.8e-44 183.0 129 69.0
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 2.6e-42 176.4 134 61.2
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 5.8e-42 175.3 122 61.5
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 7.5e-42 174.9 113 69.0
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 9.9e-42 174.5 112 68.8
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 1.3e-41 174.1 136 61.0
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 1.3e-41 174.1 112 68.8
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.7e-41 173.7 147 58.5
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 1.7e-41 173.7 112 67.9
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 1.7e-41 173.7 147 57.8
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 2.2e-41 173.3 116 66.4
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 4.9e-41 172.2 116 63.8
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 4.9e-41 172.2 121 64.5
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 6.4e-41 171.8 121 63.6
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 6.4e-41 171.8 118 64.4
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 8.3e-41 171.4 112 67.0
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 1.4e-40 170.6 110 68.2
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 1.4e-40 170.6 112 67.9
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 1.9e-40 170.2 112 67.9
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 1.9e-40 170.2 112 69.6
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 1.9e-40 170.2 121 62.8
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 3.2e-40 169.5 118 65.3
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 3.2e-40 169.5 118 66.1
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 4.1e-40 169.1 116 63.8
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 5.4e-40 168.7 114 64.9
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 5.4e-40 168.7 172 50.0
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 7.1e-40 168.3 113 65.5
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 7.1e-40 168.3 111 66.7
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 7.1e-40 168.3 134 58.2
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 7.1e-40 168.3 113 67.3
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 7.1e-40 168.3 118 65.3
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 9.2e-40 167.9 116 63.8
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 9.2e-40 167.9 119 61.3
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 9.2e-40 167.9 113 68.1
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 9.2e-40 167.9 123 63.4
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 9.2e-40 167.9 109 69.7
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 9.2e-40 167.9 113 67.3
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 1.2e-39 167.5 112 67.9
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 1.2e-39 167.5 111 67.6
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 1.2e-39 167.5 114 64.0
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 1.2e-39 167.5 114 64.0
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 1.2e-39 167.5 147 57.1
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.2e-39 167.5 147 57.1
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 1.6e-39 167.2 112 66.1
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 1.6e-39 167.2 118 66.1
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 1.6e-39 167.2 112 66.1
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 1.6e-39 167.2 110 66.4
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 2.1e-39 166.8 112 66.1
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 2.1e-39 166.8 116 64.7
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 2.1e-39 166.8 112 65.2
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 2.1e-39 166.8 115 66.1
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 2.7e-39 166.4 132 58.3
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 2.7e-39 166.4 120 60.0
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 2.7e-39 166.4 115 63.5
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 3.5e-39 166.0 135 55.6
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 4.6e-39 165.6 167 51.5
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 4.6e-39 165.6 135 55.6
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 4.6e-39 165.6 135 55.6
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 4.6e-39 165.6 118 63.6
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 4.6e-39 165.6 113 62.8
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 4.6e-39 165.6 127 59.8
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 4.6e-39 165.6 112 67.0
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 6.0e-39 165.2 123 61.0
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 7.8e-39 164.9 110 65.5
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 7.8e-39 164.9 122 60.7
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 7.8e-39 164.9 112 64.3
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 7.8e-39 164.9 220 44.1
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 1.0e-38 164.5 110 65.5
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 1.3e-38 164.1 112 63.4
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 1.3e-38 164.1 112 63.4
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 1.3e-38 164.1 112 63.4
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 2.3e-38 163.3 140 55.0
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 2.3e-38 163.3 112 64.3
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 3.9e-38 162.5 116 63.8
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 5.1e-38 162.2 110 63.6
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 6.6e-38 161.8 114 64.0
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 6.6e-38 161.8 114 64.0
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 8.6e-38 161.4 114 64.0
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 1.1e-37 161.0 112 64.3
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 1.1e-37 161.0 118 60.2
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 1.1e-37 161.0 118 60.2
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 1.1e-37 161.0 112 65.2
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 1.9e-37 160.2 129 56.6
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 5.6e-37 158.7 138 57.2
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 7.3e-37 158.3 116 61.2
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 1.2e-36 157.5 112 63.4
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 1.6e-36 157.1 183 48.6
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 2.4e-35 153.3 113 62.8
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 2.4e-35 153.3 112 63.4
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 5.2e-35 152.1 115 57.4
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 8.9e-35 151.4 118 59.3
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 1.5e-34 150.6 147 53.1
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 3.4e-34 149.4 111 60.4
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 5.8e-34 148.7 116 62.1
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 9.9e-34 147.9 108 62.0
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 4.9e-33 145.6 127 52.8
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 7.1e-32 141.7 118 56.8
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 1.2e-31 141.0 111 59.5
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 3.5e-31 139.4 91 65.9
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 3.0e-30 136.3 91 64.8
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 3.0e-30 136.3 91 65.9
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 5.6e-29 132.1 112 58.0
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 7.3e-29 131.7 119 53.8
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 2.8e-28 129.8 114 51.8
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 4.7e-28 129.0 149 48.3
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 1.1e-27 127.9 113 54.0
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 1.4e-27 127.5 84 67.9
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 1.4e-27 127.5 170 45.9
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 1.4e-27 127.5 170 45.9
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 5.3e-27 125.6 74 75.7
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 1.5e-26 124.0 146 43.8
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 1.5e-26 124.0 118 52.5
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 4.9e-25 119.0 82 63.4
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 6.4e-25 118.6 81 64.2
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 8.4e-25 118.2 170 43.5
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 9.3e-24 114.8 135 43.0
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 1.0e-22 111.3 69 66.7
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 1.7e-22 110.5 77 61.0
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 1.6e-20 104.0 71 66.2
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 2.1e-20 103.6 73 58.9
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 3.6e-20 102.8 68 63.2
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 4.8e-20 102.4 71 64.8
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 6.2e-20 102.1 90 54.4
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 6.2e-20 102.1 90 54.4
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 6.2e-20 102.1 87 52.9
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 1.1e-19 101.3 71 64.8
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 6.9e-19 98.6 83 51.8
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 9.0e-19 98.2 69 59.4
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 2.1e-15 87.0 73 52.1
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 6.0e-15 85.5 56 62.5
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 1.8e-14 84.0 65 52.3
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 3.0e-14 83.2 86 48.8
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 1.5e-13 80.9 114 41.2
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 4.2e-08 62.8 41 63.4
Zm00001eb085260 Zea mays HOM05D005182 ORTHO05D006631 7.1e-08 62.0 60 51.7


User provided reference genes

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