Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0033s0159 Marchantia polymorpha HOM05D002510 ORTHO05D006928 2.7e-166 588.6 295 100.0
SEGI_15474 Sequoiadendron giganteum HOM05D002510 ORTHO05D006928 6.0e-57 225.3 225 50.7
Glyma.20G179800 Glycine max HOM05D002510 ORTHO05D006928 1.9e-50 203.8 237 45.1
Sc20g0001820 Simmondsia chinensis HOM05D002510 ORTHO05D006928 1.9e-50 203.8 274 43.1
RcHm_v2.0_Chr1g0363321 Rosa chinensis HOM05D002510 ORTHO05D006928 2.5e-50 203.4 249 46.6
EL10Ac3g05855 Beta vulgaris HOM05D002510 ORTHO05D006928 4.2e-50 202.6 213 48.4
Phvul.007G094800 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 9.3e-50 201.4 237 45.6
Actinidia06769 Actinidia chinensis HOM05D002510 ORTHO05D006928 1.2e-49 201.1 215 48.4
MD01G1108300 Malus domestica HOM05D002510 ORTHO05D006928 1.2e-49 201.1 312 40.7
Lalb_Chr02g0142201 Lupinus albus HOM05D002510 ORTHO05D006928 1.6e-49 200.7 215 47.4
Lsat_1_v5_gn_2_112320 Lactuca sativa HOM05D002510 ORTHO05D006928 2.1e-49 200.3 220 47.3
Eucgr.G02836 Eucalyptus grandis HOM05D002510 ORTHO05D006928 2.7e-49 199.9 215 47.4
Glyma.10G210800 Glycine max HOM05D002510 ORTHO05D006928 2.7e-49 199.9 237 43.9
CiPaw.01G272400 Carya illinoinensis HOM05D002510 ORTHO05D006928 3.5e-49 199.5 220 46.8
FvH4_7g19440 Fragaria vesca HOM05D002510 ORTHO05D006928 3.5e-49 199.5 237 46.4
FAN01G2940 Fragaria x ananassa HOM05D002510 ORTHO05D007210 3.5e-49 199.5 237 46.0
FAN06G0282 Fragaria x ananassa HOM05D002510 ORTHO05D006928 3.5e-49 199.5 237 46.4
Prupe.2G213200 Prunus persica HOM05D002510 ORTHO05D006928 3.5e-49 199.5 231 47.2
Sp4g21360 Schrenkiella parvula HOM05D002510 ORTHO05D006928 3.5e-49 199.5 230 44.8
TWI15G0405 Tripterygium wilfordii HOM05D002510 ORTHO05D006928 3.5e-49 199.5 210 48.6
arahy.Tifrunner.gnm1.ann1.B5KM0B Arachis hypogaea HOM05D002510 ORTHO05D006928 4.6e-49 199.1 245 43.3
FAN03G1741 Fragaria x ananassa HOM05D002510 ORTHO05D006928 4.6e-49 199.1 237 46.0
FAN10G0968 Fragaria x ananassa HOM05D002510 ORTHO05D007210 4.6e-49 199.1 237 46.0
FAN10G3768 Fragaria x ananassa HOM05D002510 ORTHO05D007210 4.6e-49 199.1 237 46.0
Lalb_Chr06g0162351 Lupinus albus HOM05D002510 ORTHO05D006928 4.6e-49 199.1 209 47.4
arahy.Tifrunner.gnm1.ann1.D0MVTX Arachis hypogaea HOM05D002510 ORTHO05D006928 6.1e-49 198.7 245 43.3
HanXRQChr14g0456861 Helianthus annuus HOM05D002510 ORTHO05D006928 6.1e-49 198.7 245 43.7
PGR142G1169 Punica granatum HOM05D002510 ORTHO05D006928 6.1e-49 198.7 241 45.6
Sabra08G0027000 Salix brachista HOM05D002510 ORTHO05D006928 6.1e-49 198.7 215 47.4
Lj5g0027397 Lotus japonicus HOM05D002510 ORTHO05D006928 7.9e-49 198.4 212 49.1
CSS0017911 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 1.0e-48 198.0 215 46.0
DCAR_019102 Daucus carota HOM05D002510 ORTHO05D006928 1.0e-48 198.0 237 43.5
Manes.07G100200 Manihot esculenta HOM05D002510 ORTHO05D006928 1.0e-48 198.0 247 42.9
GSVIVG01016268001 Vitis vinifera HOM05D002510 ORTHO05D006928 1.0e-48 198.0 215 46.0
Potri.008G039300 Populus trichocarpa HOM05D002510 ORTHO05D006928 1.3e-48 197.6 248 44.4
Thhalv10017009m.g Eutrema salsugineum HOM05D002510 ORTHO05D006928 1.8e-48 197.2 211 48.3
Atru.chr12.758 Acer truncatum HOM05D002510 ORTHO05D006928 2.3e-48 196.8 220 46.4
Duzib128G0305 Durio zibethinus HOM05D002510 ORTHO05D006928 2.3e-48 196.8 215 47.9
Nn2g10810 Nelumbo nucifera HOM05D002510 ORTHO05D006928 3.0e-48 196.4 220 47.3
Ca_10569_v3 Cicer arietinum L. HOM05D002800 ORTHO05D008563 3.9e-48 196.1 242 42.6
THA.LOC104827063 Tarenaya hassleriana HOM05D002510 ORTHO05D006928 3.9e-48 196.1 251 42.2
MD07G1174400 Malus domestica HOM05D002510 ORTHO05D006928 5.1e-48 195.7 307 40.7
Medtr1g095000 Medicago truncatula HOM05D002510 ORTHO05D006928 6.7e-48 195.3 295 38.0
Duzib114G0372 Durio zibethinus HOM05D002510 ORTHO05D006928 8.7e-48 194.9 215 46.5
HPP92_014717 Vanilla planifolia HOM05D002510 ORTHO05D006928 8.7e-48 194.9 235 44.7
QL08p055746 Quercus lobata HOM05D002510 ORTHO05D006928 1.1e-47 194.5 305 40.0
Thecc.10G074800 Theobroma cacao HOM05D002510 ORTHO05D006928 1.1e-47 194.5 215 46.5
SGA_v2.0_scaffold62G21410 Striga asiatica HOM05D002510 ORTHO05D006928 1.5e-47 194.1 243 44.4
Ah.10g032650 Amaranthus hybridus HOM05D002510 ORTHO05D006928 1.9e-47 193.7 212 45.8
Carub.0004s2104 Capsella rubella HOM05D002510 ORTHO05D006928 1.9e-47 193.7 244 41.4
AT2G39000 Arabidopsis thaliana HOM05D002510 ORTHO05D006928 2.5e-47 193.4 207 46.4
Haze_16887 Corylus avellana HOM05D002510 ORTHO05D006928 2.5e-47 193.4 304 39.8
AL4G36300 Arabidopsis lyrata HOM05D002510 ORTHO05D006928 3.3e-47 193.0 207 45.9
Ciclev10032329m.g Citrus clementina HOM05D002510 ORTHO05D006928 3.3e-47 193.0 215 47.4
Lj1C913T4 Lonicera japonica HOM05D002510 ORTHO05D006928 3.3e-47 193.0 299 39.8
Nitab4.5_0002524g0010 Nicotiana tabacum HOM05D002510 ORTHO05D006928 3.3e-47 193.0 215 45.6
BraA04t18437Z Brassica rapa HOM05D002510 ORTHO05D006928 4.3e-47 192.6 273 39.9
MELO3C019798.2 Cucumis melo HOM05D002510 ORTHO05D006928 4.3e-47 192.6 258 40.7
CsaV3_6G036450 Cucumis sativus L. HOM05D002510 ORTHO05D006928 4.3e-47 192.6 215 44.7
Gohir.A10G205600 Gossypium hirsutum HOM05D002510 ORTHO05D006928 4.3e-47 192.6 215 45.6
BcaC02g12914 Brassica carinata HOM05D002510 ORTHO05D006928 5.7e-47 192.2 242 44.2
Migut.F01984 Erythranthe guttata HOM05D002510 ORTHO05D006928 5.7e-47 192.2 234 44.0
Psat6g183480 Pisum sativum HOM05D002510 ORTHO05D006928 5.7e-47 192.2 292 38.4
Potri.010G222900 Populus trichocarpa HOM05D002510 ORTHO05D006928 9.7e-47 191.4 242 41.7
Rhsim03G0120400 Rhododendron simsii HOM05D002510 ORTHO05D006928 9.7e-47 191.4 215 44.7
Aqoxy1G01228 Aquilegia oxysepala HOM05D002510 ORTHO05D006928 1.3e-46 191.0 213 46.5
Oeu031347.1 Olea europaea HOM05D002510 ORTHO05D006928 1.3e-46 191.0 215 46.5
arahy.Tifrunner.gnm1.ann1.DB5KD4 Arachis hypogaea HOM05D002510 ORTHO05D006928 1.6e-46 190.7 220 46.4
CARHR133780 Cardamine hirsuta HOM05D002510 ORTHO05D006928 2.2e-46 190.3 212 49.1
ClCG08G007520 Citrullus lanatus HOM05D002510 ORTHO05D006928 2.2e-46 190.3 210 46.2
Nitab4.5_0001053g0060 Nicotiana tabacum HOM05D002510 ORTHO05D006928 2.2e-46 190.3 215 45.6
Sed0007153 Sechium edule HOM05D002510 ORTHO05D006928 2.2e-46 190.3 213 44.6
TAR369G0428 Trochodendron aralioides HOM05D002510 ORTHO05D006928 2.2e-46 190.3 299 38.8
C04p67010 Brassica napus HOM05D002510 ORTHO05D006928 2.8e-46 189.9 228 45.2
BolC4t28203H Brassica oleracea HOM05D002510 ORTHO05D006928 2.8e-46 189.9 228 45.2
Os02g0806000 Oryza sativa ssp. japonica HOM05D002510 ORTHO05D006928 2.8e-46 189.9 207 45.4
Hund12054 Selenicereus undatus HOM05D002510 ORTHO05D006928 2.8e-46 189.9 214 45.8
PGSC0003DMG400033889 Solanum tuberosum HOM05D002510 ORTHO05D006928 2.8e-46 189.9 247 41.7
arahy.Tifrunner.gnm1.ann1.L5PTYD Arachis hypogaea HOM05D002510 ORTHO05D006928 3.7e-46 189.5 220 46.4
CAN.G131.8 Capsicum annuum HOM05D002510 ORTHO05D006928 3.7e-46 189.5 207 45.9
MSTRG.9172 Avicennia marina HOM05D002510 ORTHO05D006928 4.8e-46 189.1 216 45.4
Dinv31320 Davidia involucrata HOM05D002510 ORTHO05D006928 4.8e-46 189.1 210 45.7
Cc02_g11320 Coffea canephora HOM05D002510 ORTHO05D006928 6.3e-46 188.7 215 46.0
Lj3g0006441 Lotus japonicus HOM05D002510 ORTHO05D006928 1.1e-45 188.0 209 45.9
AUR62037755 Chenopodium quinoa HOM05D002510 ORTHO05D006928 3.1e-45 186.4 212 44.8
AUR62018249 Chenopodium quinoa HOM05D002510 ORTHO05D006928 5.3e-45 185.7 212 44.8
Sabra10G0172300 Salix brachista HOM05D002510 ORTHO05D006928 5.3e-45 185.7 237 42.2
PSO063G7611 Papaver somniferum HOM05D002510 ORTHO05D006928 6.9e-45 185.3 216 44.4
ATR0048G011 Amborella trichopoda HOM05D002510 ORTHO05D006928 9.0e-45 184.9 233 42.5
Gorai.011G239300 Gossypium raimondii HOM05D002510 ORTHO05D006928 1.2e-44 184.5 215 44.7
CSS0041581 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 1.5e-44 184.1 210 44.8
Glyma.02G074000 Glycine max HOM05D002510 ORTHO05D006928 2.6e-44 183.3 253 42.7
vmacro04869 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 3.4e-44 183.0 217 43.3
Migut.F01753 Erythranthe guttata HOM05D002510 ORTHO05D006928 5.9e-44 182.2 212 44.8
Gohir.D10G213800 Gossypium hirsutum HOM05D002510 ORTHO05D006928 1.0e-43 181.4 215 44.2
Lalb_Chr03g0035921 Lupinus albus HOM05D002510 ORTHO05D006928 1.3e-43 181.0 279 39.4
Phvul.004G083200 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 1.3e-43 181.0 246 41.5
CDE04G1444 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 1.7e-43 180.6 248 43.5
CSS0006577 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 2.2e-43 180.3 210 44.8
PSO339G5277 Papaver somniferum HOM05D002510 ORTHO05D006928 2.2e-43 180.3 216 44.0
TAR623G0044 Trochodendron aralioides HOM05D002510 ORTHO05D006928 2.2e-43 180.3 240 40.8
A04p29730 Brassica napus HOM05D002510 ORTHO05D006928 3.8e-43 179.5 296 36.8
VMungo1197G0001 Vigna mungo HOM05D002510 ORTHO05D006928 1.1e-42 177.9 247 42.5
Actinidia38854 Actinidia chinensis HOM05D002510 ORTHO05D006928 1.0e-40 171.4 215 41.9
SMO134G0014 Selaginella moellendorffii HOM05D002510 ORTHO05D006928 3.0e-40 169.9 219 42.9
unitig_88.g27817 Utricularia gibba HOM05D002510 ORTHO05D006928 6.7e-40 168.7 209 43.5
VMungo0464G1224 Vigna mungo HOM05D002510 ORTHO05D006928 1.5e-39 167.5 249 40.2
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 1.3e-38 164.5 214 42.5
Lj3g0019343 Lotus japonicus HOM05D002510 ORTHO05D006928 3.7e-38 162.9 221 40.7
Cpa.g.sc53.85 Carica papaya HOM05D002510 ORTHO05D006928 4.5e-36 156.0 177 46.9
ECA238G3090 Erigeron canadensis HOM05D002510 ORTHO05D006928 1.3e-35 154.5 232 39.7
Atru.chr12.782 Acer truncatum HOM05D002510 ORTHO05D006928 3.8e-35 152.9 183 46.4
SalBow4G2249 Salvia bowleyana HOM05D002510 ORTHO05D006928 1.1e-31 141.4 243 35.8
Gohir.D10G213900 Gossypium hirsutum HOM05D002510 ORTHO05D006928 2.0e-31 140.6 174 44.3
Peaxi162Scf01719g00013 Petunia axillaris HOM05D002510 ORTHO05D006928 3.7e-30 136.3 209 38.8
SalBow3G0053 Salvia bowleyana HOM05D002510 ORTHO05D006928 1.2e-28 131.3 174 40.8
Oeu014386.1 Olea europaea HOM05D002510 ORTHO05D006928 5.9e-28 129.0 176 42.6
Dinv36437 Davidia involucrata HOM05D002510 ORTHO05D006928 1.1e-26 124.8 155 45.2
Gohir.A10G205500 Gossypium hirsutum HOM05D002510 ORTHO05D006928 1.9e-26 124.0 161 43.5
CDE06G2540 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 2.7e-25 120.2 208 38.9
AagrBONN_evm.TU.Sc2ySwM_117.96 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.7e-23 111.7 132 47.7
Zm00001eb172140 Zea mays HOM05D002510 ORTHO05D006928 7.2e-18 95.5 120 40.8
CAN.G790.5 Capsicum annuum HOM05D002510 ORTHO05D006928 9.4e-18 95.1 130 37.7
Solyc04g025230.1 Solanum lycopersicum HOM05D002510 ORTHO05D006928 9.4e-18 95.1 90 47.8
Aa31LG5G20680 Aethionema arabicum HOM05D002510 ORTHO05D006928 2.3e-16 90.5 139 36.7
vmacro07070 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 8.8e-16 88.6 126 37.3
Glyma.16G155400 Glycine max HOM05D002510 ORTHO05D006928 3.1e-13 80.1 166 34.9
Solyc04g025240.2 Solanum lycopersicum HOM05D002510 ORTHO05D006928 2.0e-12 77.4 131 34.4
Sopen04g011630 Solanum pennellii HOM05D002510 ORTHO05D006928 1.7e-11 74.3 156 34.6
Lj2g0015916 Lotus japonicus HOM05D002510 ORTHO05D006928 1.1e-10 71.6 125 36.0
PRCOL_00005349 Prasinoderma coloniale HOM05D002510 ORTHO05D006928 4.2e-10 69.7 81 46.9
Cre16.g662650 Chlamydomonas reinhardtii HOM05D002510 ORTHO05D006928 7.2e-10 68.9 132 33.3
Actinidia32448 Actinidia chinensis HOM05D002510 ORTHO05D006928 2.7e-09 67.0 62 48.4
MCO13G231 Micromonas commoda HOM05D005733 ORTHO05D006928 6.1e-09 65.9 85 38.8
Cre13.g581150 Chlamydomonas reinhardtii HOM05D005733 ORTHO05D006928 1.8e-08 64.3 82 45.1
AagrBONN_evm.TU.Sc2ySwM_117.2238 Anthoceros agrestis HOM05D004023 ORTHO05D004681 1.7e-06 57.8 63 41.3
SalBow6G0174 Salvia bowleyana HOM05D005733 ORTHO05D007442 1.7e-06 57.8 57 47.4
Pp3c11_5280 Physcomitrium patens HOM05D005733 ORTHO05D007442 2.2e-06 57.4 59 45.8
Carub.0007s1276 Capsella rubella HOM05D005733 ORTHO05D007442 3.7e-06 56.6 59 42.4
Thhalv10025984m.g Eutrema salsugineum HOM05D005733 ORTHO05D007442 4.8e-06 56.2 59 42.4
SMO200G0269 Selaginella moellendorffii HOM05D004023 ORTHO05D004681 4.8e-06 56.2 57 42.1
AT4G28030 Arabidopsis thaliana HOM05D005733 ORTHO05D007442 6.3e-06 55.8 59 42.4
Migut.J01418 Erythranthe guttata HOM05D005733 ORTHO05D007442 6.3e-06 55.8 57 43.9
Mapoly0023s0080 Marchantia polymorpha HOM05D004023 ORTHO05D004681 6.3e-06 55.8 132 29.5
CARHR235730 Cardamine hirsuta HOM05D005733 ORTHO05D007442 8.3e-06 55.5 59 42.4


User provided reference genes

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