Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 4.4e-203 711.1 361 100.0
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 9.6e-89 331.3 292 60.6
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 6.2e-88 328.6 305 59.3
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 2.0e-86 323.6 293 57.3
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 2.2e-85 320.1 282 58.2
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 2.2e-85 320.1 282 57.4
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 2.9e-85 319.7 320 55.3
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 3.8e-85 319.3 322 52.2
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 1.9e-84 317.0 344 50.6
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 3.2e-84 316.2 282 58.2
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 3.2e-84 316.2 289 59.2
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 3.2e-84 316.2 325 52.0
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 4.2e-84 315.8 282 58.5
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 4.2e-84 315.8 282 57.4
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 4.2e-84 315.8 282 58.9
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 5.4e-84 315.5 317 53.9
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 7.1e-84 315.1 351 52.1
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 7.1e-84 315.1 330 51.8
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 1.6e-83 313.9 282 58.9
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 1.6e-83 313.9 289 59.2
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 2.1e-83 313.5 282 57.8
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 2.1e-83 313.5 286 57.7
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 2.7e-83 313.2 282 58.5
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 3.5e-83 312.8 282 56.7
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 3.5e-83 312.8 282 57.8
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 3.5e-83 312.8 317 53.3
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 3.5e-83 312.8 318 53.5
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 1.0e-82 311.2 282 57.8
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 1.0e-82 311.2 282 57.8
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 1.7e-82 310.5 310 56.1
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 2.3e-82 310.1 354 50.0
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 2.3e-82 310.1 305 54.8
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 2.3e-82 310.1 282 57.4
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 3.0e-82 309.7 307 53.4
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 3.0e-82 309.7 282 57.4
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 3.0e-82 309.7 282 58.2
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 3.0e-82 309.7 354 50.8
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 5.1e-82 308.9 282 57.4
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 5.1e-82 308.9 354 50.8
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 5.1e-82 308.9 282 57.1
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 5.1e-82 308.9 282 57.1
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 6.6e-82 308.5 282 57.8
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 6.6e-82 308.5 305 54.8
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 6.6e-82 308.5 282 55.3
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 6.6e-82 308.5 282 57.1
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 6.6e-82 308.5 282 56.7
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 8.7e-82 308.1 321 53.3
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 8.7e-82 308.1 321 53.3
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 8.7e-82 308.1 282 58.2
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 8.7e-82 308.1 284 56.7
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 8.7e-82 308.1 282 57.4
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 1.1e-81 307.8 282 57.1
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 1.1e-81 307.8 286 57.0
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 1.1e-81 307.8 282 56.7
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 1.1e-81 307.8 282 55.7
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 1.1e-81 307.8 292 56.8
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 1.5e-81 307.4 282 57.4
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 1.5e-81 307.4 282 56.7
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 1.5e-81 307.4 334 48.8
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 1.9e-81 307.0 282 56.7
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.9e-81 307.0 282 56.7
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 2.5e-81 306.6 334 50.0
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 2.5e-81 306.6 282 57.1
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 2.5e-81 306.6 282 57.1
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 3.3e-81 306.2 345 51.0
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 3.3e-81 306.2 341 51.3
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 4.3e-81 305.8 282 56.7
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 4.3e-81 305.8 282 55.0
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 4.3e-81 305.8 297 54.5
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 4.3e-81 305.8 354 49.4
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 4.3e-81 305.8 280 57.1
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 7.3e-81 305.1 282 57.1
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 7.3e-81 305.1 282 56.7
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 7.3e-81 305.1 282 56.0
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 9.6e-81 304.7 312 52.9
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 1.3e-80 304.3 282 56.0
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 1.3e-80 304.3 282 56.4
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 1.6e-80 303.9 302 53.6
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 1.6e-80 303.9 282 56.4
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 1.6e-80 303.9 354 50.0
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 1.6e-80 303.9 282 56.4
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 1.6e-80 303.9 285 58.9
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 2.1e-80 303.5 280 54.6
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 2.1e-80 303.5 292 55.8
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 2.1e-80 303.5 331 51.7
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 2.1e-80 303.5 282 56.4
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 2.8e-80 303.1 292 54.8
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 3.6e-80 302.8 319 52.4
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 3.6e-80 302.8 282 56.7
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 3.6e-80 302.8 304 54.3
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 3.6e-80 302.8 282 55.0
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 4.8e-80 302.4 282 56.0
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 4.8e-80 302.4 282 56.4
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 4.8e-80 302.4 282 55.7
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 4.8e-80 302.4 282 55.0
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 6.2e-80 302.0 292 56.2
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 1.1e-79 301.2 323 51.7
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.8e-79 300.4 282 56.7
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 1.8e-79 300.4 282 56.0
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 2.4e-79 300.1 327 52.3
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 2.4e-79 300.1 273 57.9
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 3.1e-79 299.7 282 56.4
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 3.1e-79 299.7 325 51.4
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 3.1e-79 299.7 282 55.7
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 3.1e-79 299.7 292 56.2
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 4.0e-79 299.3 282 56.0
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 5.3e-79 298.9 280 56.8
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 9.0e-79 298.1 292 55.1
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 1.2e-78 297.7 292 54.1
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 1.5e-78 297.4 325 51.1
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 1.5e-78 297.4 341 49.9
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 1.5e-78 297.4 318 51.9
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 2.0e-78 297.0 282 56.7
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 2.6e-78 296.6 280 56.4
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 2.6e-78 296.6 282 54.3
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 3.4e-78 296.2 318 52.2
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 5.8e-78 295.4 282 55.3
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 7.6e-78 295.0 282 55.3
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 9.9e-78 294.7 277 56.3
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 1.3e-77 294.3 338 50.6
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.2e-77 293.5 277 54.9
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 3.8e-77 292.7 327 51.4
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 2.4e-76 290.0 262 56.9
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 5.4e-76 288.9 282 52.8
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 9.3e-76 288.1 282 54.3
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.2e-75 287.7 275 54.5
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 1.0e-74 284.6 256 57.8
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 1.3e-74 284.3 256 57.4
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 1.5e-73 280.8 331 48.3
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 3.3e-73 279.6 276 54.3
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 4.3e-73 279.3 265 55.8
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 7.4e-73 278.5 282 52.8
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 1.3e-72 277.7 321 48.6
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 1.3e-72 277.7 282 53.9
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 4.8e-72 275.8 282 53.9
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 3.4e-70 269.6 290 53.4
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 4.5e-70 269.2 276 53.6
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 7.6e-70 268.5 314 48.1
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 1.4e-68 264.2 282 51.4
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 2.7e-67 260.0 253 55.3
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 7.9e-67 258.5 325 47.7
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 5.6e-65 252.3 188 66.5
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 7.4e-65 251.9 283 50.2
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 1.5e-62 244.2 262 51.9
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 2.9e-61 240.0 277 47.3
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 3.8e-53 213.0 189 60.3
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 5.0e-53 212.6 190 59.5
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 8.7e-50 201.8 187 58.8
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 1.6e-43 181.0 178 56.2
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 2.7e-43 180.3 222 46.8
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.6e-41 173.7 245 44.9
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 3.7e-40 169.9 189 49.7
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 9.1e-39 165.2 174 51.7
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 5.9e-38 162.5 250 40.8
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.9e-36 157.5 127 59.8
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 5.5e-36 156.0 326 36.2
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 7.9e-35 152.1 141 56.7
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 1.4e-34 151.4 159 50.9
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 6.3e-32 142.5 224 43.8
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 1.0e-26 125.2 284 28.9
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 2.9e-21 107.1 73 71.2
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 4.2e-20 103.2 69 73.9
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 1.6e-19 101.3 79 60.8
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 3.6e-19 100.1 105 48.6
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 6.1e-19 99.4 66 75.8
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 8.0e-19 99.0 94 50.0
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.3e-16 91.7 82 57.3
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 1.6e-11 74.7 200 34.0
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 2.4e-07 60.8 93 41.9
SEGI_36179 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 4.5e-06 56.6 180 29.4


User provided reference genes

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