Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0033s0120 Marchantia polymorpha HOM05D021989 ORTHO05D021228 2.6e-83 312.0 155 100.0
Pp3c17_13630 Physcomitrium patens HOM05D021989 ORTHO05D021228 6.0e-32 141.4 129 51.9
AagrBONN_evm.TU.Sc2ySwM_228.843 Anthoceros agrestis HOM05D021989 ORTHO05D021228 2.1e-24 116.3 126 46.8
ATR0584G064 Amborella trichopoda HOM05D021989 ORTHO05D021228 1.6e-21 106.7 144 42.4
SEGI_01352 Sequoiadendron giganteum HOM05D021989 ORTHO05D021228 2.9e-18 95.9 75 60.0
Ciclev10020753m.g Citrus clementina HOM05D001964 ORTHO05D001879 3.8e-10 68.9 102 36.3
A03p57500 Brassica napus HOM05D001964 ORTHO05D001879 5.0e-10 68.6 112 38.4
BraA03t14818Z Brassica rapa HOM05D001964 ORTHO05D001879 5.0e-10 68.6 112 38.4
CARHR235500 Cardamine hirsuta HOM05D001964 ORTHO05D001879 8.5e-10 67.8 117 37.6
Migut.F01015 Erythranthe guttata HOM05D001964 ORTHO05D001879 1.1e-09 67.4 119 34.5
Eucgr.K00399 Eucalyptus grandis HOM05D001964 ORTHO05D001879 1.1e-09 67.4 123 35.8
THA.LOC104825156 Tarenaya hassleriana HOM05D001964 ORTHO05D001879 1.9e-09 66.6 99 39.4
BcaC09g50538 Brassica carinata HOM05D001964 ORTHO05D001879 2.5e-09 66.2 136 35.3
BolC1t02373H Brassica oleracea HOM05D001964 ORTHO05D001879 2.5e-09 66.2 136 35.3
BraA01t01865Z Brassica rapa HOM05D001964 ORTHO05D001879 2.5e-09 66.2 137 35.0
Oeu023664.1 Olea europaea HOM05D001964 ORTHO05D001879 3.2e-09 65.9 105 34.3
Carub.0007s1304 Capsella rubella HOM05D001964 ORTHO05D001879 4.2e-09 65.5 99 38.4
Actinidia18661 Actinidia chinensis HOM05D001964 ORTHO05D001879 5.5e-09 65.1 109 33.9
A01p19230 Brassica napus HOM05D001964 ORTHO05D001879 5.5e-09 65.1 137 35.0
C01p24160 Brassica napus HOM05D001964 ORTHO05D001879 5.5e-09 65.1 120 35.8
PGR142G1958 Punica granatum HOM05D001964 ORTHO05D001879 5.5e-09 65.1 123 35.0
Actinidia08669 Actinidia chinensis HOM05D001964 ORTHO05D001879 7.2e-09 64.7 103 36.9
Actinidia34236 Actinidia chinensis HOM05D001964 ORTHO05D001879 7.2e-09 64.7 103 37.9
BcaC06g32665 Brassica carinata HOM05D001964 ORTHO05D001879 7.2e-09 64.7 113 37.2
HPP92_014736 Vanilla planifolia HOM05D001964 ORTHO05D001879 7.2e-09 64.7 112 35.7
AL7G24870 Arabidopsis lyrata HOM05D001964 ORTHO05D001879 9.4e-09 64.3 99 37.4
AT4G27780 Arabidopsis thaliana HOM05D001964 ORTHO05D001879 9.4e-09 64.3 99 37.4
Thhalv10025574m.g Eutrema salsugineum HOM05D001964 ORTHO05D001879 9.4e-09 64.3 99 37.4
Nitab4.5_0005771g0010 Nicotiana tabacum HOM05D001964 ORTHO05D001879 9.4e-09 64.3 118 30.5
Nitab4.5_0012222g0010 Nicotiana tabacum HOM05D001964 ORTHO05D001879 9.4e-09 64.3 104 33.7
Phvul.009G050500 Phaseolus vulgaris HOM05D001964 ORTHO05D001879 9.4e-09 64.3 118 33.9
THA.LOC104799963 Tarenaya hassleriana HOM05D001964 ORTHO05D001879 9.4e-09 64.3 103 37.9
Aa31LG3G9630 Aethionema arabicum HOM05D001108 ORTHO05D001619 1.2e-08 63.9 99 38.4
CiPaw.05G198800 Carya illinoinensis HOM05D001964 ORTHO05D001879 1.2e-08 63.9 129 32.6
Dinv35347 Davidia involucrata HOM05D001108 ORTHO05D001619 1.2e-08 63.9 103 36.9
GSVIVG01038582001 Vitis vinifera HOM05D001964 ORTHO05D001879 1.2e-08 63.9 103 36.9
Haze_00237 Corylus avellana HOM05D001964 ORTHO05D001879 1.6e-08 63.5 129 31.8
Sp7g25740 Schrenkiella parvula HOM05D001964 ORTHO05D001879 1.6e-08 63.5 119 35.3
AL8G28170 Arabidopsis lyrata HOM05D001964 ORTHO05D001879 2.1e-08 63.2 117 35.9
BcaNung01621 Brassica carinata HOM05D001964 ORTHO05D001879 2.7e-08 62.8 99 36.4
CAN.G481.36 Capsicum annuum HOM05D001964 ORTHO05D001879 2.7e-08 62.8 135 28.1
Prupe.2G314100 Prunus persica HOM05D001964 ORTHO05D001879 2.7e-08 62.8 115 34.8
AagrBONN_evm.TU.Sc2ySwM_344.3382 Anthoceros agrestis HOM05D001964 ORTHO05D001879 3.6e-08 62.4 147 32.0
AT5G53470 Arabidopsis thaliana HOM05D001964 ORTHO05D001879 3.6e-08 62.4 116 35.3
Glyma.06G131200 Glycine max HOM05D001964 ORTHO05D001879 3.6e-08 62.4 99 35.4
Lj1g0001644 Lotus japonicus HOM05D001964 ORTHO05D001879 3.6e-08 62.4 117 32.5
VMungo1309G0711 Vigna mungo HOM05D001964 ORTHO05D001879 3.6e-08 62.4 118 33.1
Cfa016208 Carpinus fangiana HOM05D001964 ORTHO05D001879 4.6e-08 62.0 129 30.2
Dinv29263 Davidia involucrata HOM05D001964 ORTHO05D001879 4.6e-08 62.0 103 35.9
Thhalv10014004m.g Eutrema salsugineum HOM05D001964 ORTHO05D001879 4.6e-08 62.0 99 36.4
Peaxi162Scf00740g00243 Petunia axillaris HOM05D001964 ORTHO05D001879 4.6e-08 62.0 104 32.7
Sopen03g022730 Solanum pennellii HOM05D001964 ORTHO05D001879 4.6e-08 62.0 117 31.6
TWI39G1041 Tripterygium wilfordii HOM05D001964 ORTHO05D001879 4.6e-08 62.0 119 31.9
Cc02_g01280 Coffea canephora HOM05D001964 ORTHO05D001879 6.1e-08 61.6 99 35.4
Duzib068G1035 Durio zibethinus HOM05D001964 ORTHO05D001879 6.1e-08 61.6 117 34.2
Pp3c25_3380 Physcomitrium patens HOM05D001964 ORTHO05D001879 6.1e-08 61.6 153 33.3
PGSC0003DMG400018524 Solanum tuberosum HOM05D001964 ORTHO05D001879 6.1e-08 61.6 98 33.7
arahy.Tifrunner.gnm1.ann1.PY5NER Arachis hypogaea HOM05D001964 ORTHO05D001879 7.9e-08 61.2 99 34.3
arahy.Tifrunner.gnm1.ann1.Q6Q4B7 Arachis hypogaea HOM05D001964 ORTHO05D001879 7.9e-08 61.2 99 34.3
MSTRG.27012 Avicennia marina HOM05D001964 ORTHO05D001879 7.9e-08 61.2 118 32.2
HanXRQChr15g0485641 Helianthus annuus HOM05D001964 ORTHO05D001879 7.9e-08 61.2 103 35.9
Manes.01G040100 Manihot esculenta HOM05D001964 ORTHO05D001879 7.9e-08 61.2 120 30.8
Nn1g00319 Nelumbo nucifera HOM05D001964 ORTHO05D001879 7.9e-08 61.2 103 35.9
Carub.0008s1363 Capsella rubella HOM05D001964 ORTHO05D001879 1.0e-07 60.8 99 35.4
Duzib084G0046 Durio zibethinus HOM05D001964 ORTHO05D001879 1.0e-07 60.8 103 35.0
Lj3A899G63 Lonicera japonica HOM05D001964 ORTHO05D001879 1.0e-07 60.8 119 32.8
MD01G1223600 Malus domestica HOM05D001964 ORTHO05D001879 1.0e-07 60.8 115 33.9
Medtr3g491870 Medicago truncatula HOM05D001964 ORTHO05D001879 1.0e-07 60.8 99 34.3
Thecc.03G202000 Theobroma cacao HOM05D001964 ORTHO05D001879 1.0e-07 60.8 103 35.0
Lalb_Chr08g0240091 Lupinus albus HOM05D001964 ORTHO05D001879 1.4e-07 60.5 99 34.3
SGA_v2.0_scaffold44G16817 Striga asiatica HOM05D001964 ORTHO05D001879 1.4e-07 60.5 105 35.2
Atru.chr12.2254 Acer truncatum HOM05D001964 ORTHO05D001879 1.8e-07 60.1 99 35.4
CDE01G0749 Ceratophyllum demersum HOM05D001964 ORTHO05D001879 1.8e-07 60.1 99 36.4
MELO3C005894.2 Cucumis melo HOM05D001964 ORTHO05D001879 1.8e-07 60.1 101 34.7
CsaV3_5G000390 Cucumis sativus L. HOM05D001964 ORTHO05D001879 1.8e-07 60.1 101 34.7
ECA232G2641 Erigeron canadensis HOM05D001964 ORTHO05D001879 1.8e-07 60.1 103 35.0
Oeu061002.1 Olea europaea HOM05D001964 ORTHO05D001879 1.8e-07 60.1 105 32.4
PSO478G2388 Papaver somniferum HOM05D001964 ORTHO05D001879 1.8e-07 60.1 108 34.3
Potri.015G010200 Populus trichocarpa HOM05D001964 ORTHO05D001879 1.8e-07 60.1 103 33.0
RcHm_v2.0_Chr1g0381681 Rosa chinensis HOM05D001964 ORTHO05D001879 1.8e-07 60.1 126 31.0
Solyc03g082910.4 Solanum lycopersicum HOM05D001964 ORTHO05D001879 1.8e-07 60.1 98 32.7
Gohir.D09G180200 Gossypium hirsutum HOM05D001964 ORTHO05D001879 2.3e-07 59.7 103 34.0
Gorai.006G202200 Gossypium raimondii HOM05D001964 ORTHO05D001879 2.3e-07 59.7 103 34.0
Psat5g075400 Pisum sativum HOM05D001964 ORTHO05D001879 2.3e-07 59.7 99 34.3
C02p18290 Brassica napus HOM05D001964 ORTHO05D001879 3.0e-07 59.3 114 35.1
Gohir.A09G185300 Gossypium hirsutum HOM05D001964 ORTHO05D001879 3.0e-07 59.3 103 34.0
Lalb_Chr23g0271661 Lupinus albus HOM05D001964 ORTHO05D001879 3.0e-07 59.3 99 34.3
Ca_16725_v3 Cicer arietinum L. HOM05D001964 ORTHO05D001879 3.9e-07 58.9 136 30.9
FAN10G3638 Fragaria x ananassa HOM05D001964 ORTHO05D001879 3.9e-07 58.9 106 33.0
FAN10G4031 Fragaria x ananassa HOM05D001964 ORTHO05D001879 3.9e-07 58.9 106 33.0
Glyma.04G233600 Glycine max HOM05D001964 ORTHO05D001879 3.9e-07 58.9 99 34.3
MD07G1294300 Malus domestica HOM05D001964 ORTHO05D001879 3.9e-07 58.9 115 33.0
SalBow4G2133 Salvia bowleyana HOM05D001964 ORTHO05D001879 5.1e-07 58.5 99 34.3
CANSAT21G2059 Cannabis sativa HOM05D001964 ORTHO05D001879 6.7e-07 58.2 102 32.4
DCAR_020338 Daucus carota HOM05D001964 ORTHO05D001879 6.7e-07 58.2 99 33.3
Migut.F00193 Erythranthe guttata HOM05D001964 ORTHO05D001879 6.7e-07 58.2 99 34.3
PSO384G2260 Papaver somniferum HOM05D001964 ORTHO05D001879 6.7e-07 58.2 108 33.3
EL10Ac3g05250 Beta vulgaris HOM05D001964 ORTHO05D001879 8.8e-07 57.8 102 33.3
BcaB05g22047 Brassica carinata HOM05D001964 ORTHO05D001879 8.8e-07 57.8 99 34.3
FvH4_7g32090 Fragaria vesca HOM05D001964 ORTHO05D001879 8.8e-07 57.8 106 32.1
FAN01G3061 Fragaria x ananassa HOM05D001964 ORTHO05D001879 8.8e-07 57.8 106 32.1
FAN03G0004 Fragaria x ananassa HOM05D000020 ORTHO05D001879 8.8e-07 57.8 106 32.1
FAN06G1141 Fragaria x ananassa HOM05D001964 ORTHO05D001879 8.8e-07 57.8 106 32.1
Hma1.2p1_0591F.1_g185185 Hydrangea macrophylla HOM05D001964 ORTHO05D001879 8.8e-07 57.8 107 32.7
Lsat_1_v5_gn_8_5421 Lactuca sativa HOM05D001964 ORTHO05D001879 8.8e-07 57.8 99 35.4
Sabra15G0008200 Salix brachista HOM05D001964 ORTHO05D001879 8.8e-07 57.8 101 32.7
TAR629G0758 Trochodendron aralioides HOM05D001964 ORTHO05D001879 8.8e-07 57.8 112 32.1
Ah.13g070440 Amaranthus hybridus HOM05D001964 ORTHO05D001879 1.1e-06 57.4 113 31.0
BcaC03g14414 Brassica carinata HOM05D001964 ORTHO05D001879 1.1e-06 57.4 114 33.3
BolC2t07963H Brassica oleracea HOM05D001964 ORTHO05D001879 1.1e-06 57.4 114 33.3
Cre14.g627800 Chlamydomonas reinhardtii HOM05D001964 ORTHO05D001879 1.1e-06 57.4 104 36.5
Sp6g15600 Schrenkiella parvula HOM05D001964 ORTHO05D001879 1.5e-06 57.0 115 34.8
Sed0025752 Sechium edule HOM05D001964 ORTHO05D001879 1.5e-06 57.0 101 36.6
Ah.07g205340 Amaranthus hybridus HOM05D001964 ORTHO05D001879 2.0e-06 56.6 117 30.8
ClCG01G000330 Citrullus lanatus HOM05D001964 ORTHO05D001879 2.0e-06 56.6 101 32.7
Potri.012G017700 Populus trichocarpa HOM05D001964 ORTHO05D001879 2.0e-06 56.6 126 31.0
Hund11641 Selenicereus undatus HOM05D001964 ORTHO05D001879 2.0e-06 56.6 103 33.0
Sc19g0000820 Simmondsia chinensis HOM05D001964 ORTHO05D001879 2.0e-06 56.6 99 31.3
vmacro06400 Vaccinium macrocarpon HOM05D001964 ORTHO05D001879 2.5e-06 56.2 103 33.0
arahy.Tifrunner.gnm1.ann1.T1AGTK Arachis hypogaea HOM05D001964 ORTHO05D001879 3.3e-06 55.8 99 33.3
arahy.Tifrunner.gnm1.ann1.C1Z395 Arachis hypogaea HOM05D001964 ORTHO05D001879 4.3e-06 55.5 99 33.3
Sabra12G0014800 Salix brachista HOM05D001964 ORTHO05D001879 4.3e-06 55.5 113 30.1
MD02G1171000 Malus domestica HOM05D001964 ORTHO05D001879 5.7e-06 55.1 108 30.6
AUR62035561 Chenopodium quinoa HOM05D001964 ORTHO05D001879 7.4e-06 54.7 100 34.0
COL.COLO4_16800 Corchorus olitorius HOM05D001964 ORTHO05D001879 9.7e-06 54.3 93 35.5


User provided reference genes

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