Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 0.0e+00 2263.4 1158 100.0
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 1.1e-306 1057.0 1149 53.5
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 1.3e-285 986.9 1169 49.6
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 9.2e-194 681.8 1116 38.9
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 1.3e-174 618.2 1104 36.7
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 1.6e-166 591.3 1069 35.4
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 1.1e-162 578.6 1262 33.5
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 1.2e-161 575.1 1101 34.7
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 2.7e-161 573.9 1108 35.3
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 2.3e-160 570.9 1107 35.2
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 7.4e-159 565.8 1044 35.2
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 7.4e-159 565.8 1109 34.9
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 2.4e-157 560.8 1376 32.5
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 4.5e-156 556.6 1057 35.1
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 7.7e-156 555.8 1121 33.8
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 3.2e-154 550.4 1119 32.7
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 5.5e-154 549.7 1101 33.3
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 7.2e-154 549.3 1100 32.9
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 9.4e-154 548.9 464 59.7
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 1.6e-153 548.1 1088 34.3
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 4.6e-153 546.6 1123 32.9
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 2.3e-152 544.3 1046 33.6
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 2.3e-152 544.3 1096 33.6
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 3.9e-152 543.5 1057 34.7
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 1.1e-151 542.0 1046 33.8
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 9.7e-151 538.9 1059 34.7
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 1.4e-149 535.0 1050 33.3
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 3.1e-149 533.9 1053 33.9
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 6.5e-147 526.2 1054 34.2
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 6.5e-147 526.2 1053 33.7
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 6.5e-147 526.2 1109 33.0
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 7.2e-146 522.7 1047 33.2
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 2.0e-143 514.6 1136 33.1
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 7.4e-143 512.7 1084 32.5
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 1.4e-141 508.4 1306 29.6
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 9.1e-141 505.8 456 52.9
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 2.0e-135 488.0 462 52.2
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 4.1e-133 480.3 705 39.9
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 5.0e-131 473.4 1145 30.9
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 4.2e-130 470.3 456 51.1
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 4.2e-130 470.3 456 51.1
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 4.2e-130 470.3 454 50.2
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 1.4e-128 465.3 703 38.7
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 1.8e-128 464.9 1095 32.5
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 3.0e-128 464.2 449 49.2
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 5.2e-128 463.4 703 38.1
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 6.8e-128 463.0 449 50.8
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 2.0e-127 461.5 454 49.8
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 2.0e-127 461.5 445 50.6
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 4.8e-126 456.8 1016 32.5
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 3.1e-125 454.1 441 49.7
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 7.7e-124 449.5 452 48.5
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 1.3e-123 448.7 452 48.0
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 6.5e-123 446.4 459 47.7
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.1e-122 445.7 454 46.5
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 1.5e-122 445.3 454 47.4
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 1.9e-122 444.9 457 47.7
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 6.1e-121 439.9 451 47.5
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 1.4e-120 438.7 452 45.4
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 1.8e-120 438.3 452 48.0
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 3.0e-120 437.6 447 46.1
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 4.0e-120 437.2 447 45.6
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 1.5e-119 435.3 441 46.5
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 4.4e-119 433.7 459 46.4
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 3.7e-118 430.6 457 46.4
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 4.8e-118 430.3 452 45.4
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 6.3e-118 429.9 462 46.1
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 2.7e-116 424.5 445 46.5
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 3.5e-116 424.1 453 47.0
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 5.9e-116 423.3 452 45.8
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 1.3e-115 422.2 452 46.7
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 1.5e-114 418.7 451 47.5
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 3.3e-114 417.5 458 45.6
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 4.2e-114 417.2 454 45.4
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 3.6e-113 414.1 458 45.4
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 8.9e-112 409.5 873 33.2
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 1.5e-111 408.7 457 45.3
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 3.2e-109 401.0 374 49.7
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 1.2e-108 399.1 461 43.4
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 2.7e-108 397.9 447 44.1
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 1.3e-107 395.6 453 42.6
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 1.7e-107 395.2 447 43.8
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 5.0e-107 393.7 440 45.2
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 8.6e-107 392.9 340 55.9
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 8.6e-107 392.9 458 43.4
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 1.1e-106 392.5 446 43.5
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 2.5e-106 391.3 447 43.0
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 5.6e-106 390.2 447 42.7
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 2.0e-103 381.7 444 41.9
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 2.0e-103 381.7 453 42.6
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 2.2e-102 378.3 447 43.4
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 6.4e-102 376.7 349 53.0
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 5.4e-101 373.6 453 41.7
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 5.4e-101 373.6 454 43.2
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 1.6e-100 372.1 300 58.7
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 3.9e-99 367.5 362 50.3
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 1.6e-97 362.1 452 42.7
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 1.4e-96 359.0 345 49.6
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 1.5e-90 339.0 466 39.5
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 1.5e-90 339.0 466 39.5
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 7.3e-90 336.7 822 31.9
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 6.8e-88 330.1 352 45.5
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 1.1e-85 322.8 450 39.1
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 4.6e-84 317.4 367 43.6
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 6.6e-83 313.5 450 38.4
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 2.5e-82 311.6 704 30.7
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 7.8e-76 290.0 353 42.5
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 1.0e-75 289.7 447 36.9
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 5.8e-71 273.9 316 43.7
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 3.6e-65 254.6 368 37.2
Os11g0171400 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D007413 1.3e-62 246.1 253 46.6
Nitab4.5_0001515g0060 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.3e-57 229.6 196 53.1
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 7.9e-44 183.7 358 34.1
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 1.1e-42 179.9 255 38.8
BcaC01g05781 Brassica carinata HOM05D002030 ORTHO05D007413 1.1e-37 163.3 117 59.0
BcaC01g05780 Brassica carinata HOM05D002030 ORTHO05D007413 9.1e-32 143.7 209 34.4
FAN21G2573 Fragaria x ananassa HOM05D002030 ORTHO05D007413 6.5e-30 137.5 181 43.1
MD00G1154100 Malus domestica HOM05D002030 ORTHO05D007413 1.6e-28 132.9 252 34.1
COL.COLO4_19604 Corchorus olitorius HOM05D002030 ORTHO05D007413 4.7e-28 131.3 169 39.6
Atru.chr1.1605 Acer truncatum HOM05D002030 ORTHO05D007413 1.8e-27 129.4 170 40.0
DCAR_031630 Daucus carota HOM05D002030 ORTHO05D007413 3.6e-20 105.1 144 36.1
Nitab4.5_0001515g0100 Nicotiana tabacum HOM05D002030 ORTHO05D007413 8.8e-19 100.5 62 64.5
Glyma.10G199232 Glycine max HOM05D002030 ORTHO05D007413 1.2e-12 80.1 137 35.0
Medtr4g132950 Medicago truncatula HOM05D002030 ORTHO05D007413 1.4e-11 76.6 79 46.8
Sc16g0005130 Simmondsia chinensis HOM05D002030 ORTHO05D007413 2.2e-09 69.3 83 38.6
DCAR_031631 Daucus carota HOM05D002030 ORTHO05D007413 6.5e-06 57.8 317 23.7


User provided reference genes

Program Settings