Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 5.2e-105 384.4 196 100.0
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 1.9e-54 216.5 181 59.1
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 2.4e-49 199.5 189 49.7
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 1.9e-43 179.9 193 49.2
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 2.8e-42 176.0 195 47.2
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 1.8e-41 173.3 195 45.6
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 4.0e-41 172.2 192 45.8
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 4.0e-41 172.2 195 45.6
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 5.3e-41 171.8 192 45.3
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 7.6e-40 167.9 192 46.4
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 1.3e-39 167.2 193 44.6
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 1.3e-39 167.2 193 47.2
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 1.3e-39 167.2 192 46.9
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 1.7e-39 166.8 193 45.6
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 2.9e-39 166.0 196 44.4
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 4.9e-39 165.2 193 45.6
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 1.4e-38 163.7 192 43.2
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 2.4e-38 162.9 192 44.8
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 2.4e-38 162.9 192 42.2
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 3.2e-38 162.5 192 43.8
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 4.2e-38 162.2 193 44.0
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 9.3e-38 161.0 192 42.2
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 9.3e-38 161.0 192 44.3
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 1.6e-37 160.2 192 43.2
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 2.1e-37 159.8 193 45.6
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 2.1e-37 159.8 193 42.0
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 2.1e-37 159.8 192 42.2
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 2.7e-37 159.5 192 44.3
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 2.7e-37 159.5 193 44.0
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 2.7e-37 159.5 193 42.0
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 2.7e-37 159.5 193 42.0
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 2.7e-37 159.5 193 41.5
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 4.6e-37 158.7 192 41.7
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 4.6e-37 158.7 174 48.9
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 4.6e-37 158.7 193 43.0
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 6.0e-37 158.3 184 46.2
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 7.9e-37 157.9 192 43.8
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 1.0e-36 157.5 192 41.7
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 1.0e-36 157.5 193 44.6
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.8e-36 156.8 193 42.5
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 1.8e-36 156.8 193 41.5
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 2.3e-36 156.4 193 44.0
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 3.0e-36 156.0 193 44.0
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 3.9e-36 155.6 194 43.8
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 1.5e-35 153.7 201 42.3
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 4.3e-35 152.1 185 43.2
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 7.4e-35 151.4 193 42.0
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.3e-34 150.6 184 41.8
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 1.6e-34 150.2 190 42.6
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 1.6e-34 150.2 193 41.5
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 3.7e-34 149.1 147 52.4
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 3.7e-34 149.1 199 41.7
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 3.7e-34 149.1 193 43.0
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 6.2e-34 148.3 192 42.2
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 8.1e-34 147.9 198 39.4
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.8e-33 146.7 189 42.9
CBR_g30123 Chara braunii HOM05D006640 ORTHO05D008078 2.4e-33 146.4 187 39.6
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 2.4e-33 146.4 193 39.9
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 6.9e-33 144.8 199 38.7
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 9.0e-33 144.4 193 43.0
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 5.8e-32 141.7 194 39.7
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 5.8e-32 141.7 187 39.0
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 7.6e-32 141.4 192 40.6
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 7.6e-32 141.4 196 39.8
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 9.9e-32 141.0 192 39.1
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 1.3e-31 140.6 198 37.4
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 2.2e-31 139.8 231 35.5
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 4.9e-31 138.7 184 44.6
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 6.4e-31 138.3 199 39.7
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 8.4e-31 137.9 199 39.2
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 8.4e-31 137.9 192 39.1
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 8.4e-31 137.9 184 42.4
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 1.4e-30 137.1 207 39.6
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 2.5e-30 136.3 199 40.2
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 2.5e-30 136.3 193 38.3
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 3.2e-30 136.0 195 39.0
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 5.5e-30 135.2 199 39.2
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 5.5e-30 135.2 192 38.5
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 5.5e-30 135.2 195 39.5
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 7.1e-30 134.8 199 39.2
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 9.3e-30 134.4 199 38.7
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 1.2e-29 134.0 192 39.1
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 4.6e-29 132.1 181 39.2
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 1.3e-28 130.6 156 43.6
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 5.1e-28 128.6 187 38.0
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 5.1e-28 128.6 184 38.6
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 8.7e-28 127.9 192 37.5
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 1.1e-27 127.5 143 44.8
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 1.1e-27 127.5 182 37.4
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 3.3e-27 125.9 157 42.0
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 3.3e-27 125.9 121 49.6
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 1.3e-26 124.0 189 37.0
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 3.7e-26 122.5 232 34.5
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 8.2e-26 121.3 156 38.5
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 1.8e-25 120.2 184 37.0
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 1.8e-25 120.2 157 43.9
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 2.4e-25 119.8 184 35.9
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 9.0e-25 117.9 193 35.8
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 9.0e-25 117.9 129 45.7
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 4.5e-24 115.5 199 32.7
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 1.0e-23 114.4 155 40.6
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 6.0e-21 105.1 186 36.0
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 7.9e-21 104.8 107 49.5
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 3.9e-20 102.4 127 39.4
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 5.1e-20 102.1 169 35.5
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 7.4e-19 98.2 111 45.9
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 1.4e-17 94.0 93 51.6
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 9.0e-17 91.3 124 38.7
Lj4C809G7 Lonicera japonica HOM05D006640 ORTHO05D008078 2.9e-15 86.3 145 35.9
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 8.5e-15 84.7 142 35.9
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 4.2e-14 82.4 87 48.3
Duzib205G1379 Durio zibethinus HOM05D006640 ORTHO05D008078 7.9e-13 78.2 111 41.4
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 3.9e-12 75.9 88 40.9
RcHm_v2.0_Chr3g0481381 Rosa chinensis HOM05D006640 ORTHO05D008078 1.1e-11 74.3 97 38.1
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 2.5e-11 73.2 84 44.0
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 2.5e-11 73.2 141 33.3
MCO04G502 Micromonas commoda HOM05D006640 ORTHO05D008078 3.3e-11 72.8 192 27.1
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 3.7e-10 69.3 188 28.7
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 4.8e-10 68.9 188 26.6
RcHm_v2.0_Chr3g0481391 Rosa chinensis HOM05D006640 ORTHO05D008078 6.3e-10 68.6 84 42.9
CDE04G0756 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 1.2e-08 64.3 129 31.0
Atru.chr3.42 Acer truncatum HOM05D006640 ORTHO05D008078 6.5e-07 58.5 68 42.6


User provided reference genes

Program Settings