Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 0.0e+00 1538.5 760 100.0
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 1.6e-69 268.5 738 31.0
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 1.1e-38 166.0 140 55.7
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 3.3e-38 164.5 340 34.1
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 9.5e-38 162.9 146 54.8
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 6.8e-36 156.8 276 39.5
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 1.3e-34 152.5 250 39.2
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 2.2e-34 151.8 215 41.9
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 4.9e-34 150.6 273 36.6
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 8.3e-34 149.8 286 38.8
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 3.2e-33 147.9 290 34.5
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 4.1e-33 147.5 140 52.1
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 7.0e-33 146.7 290 33.8
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 9.2e-33 146.4 148 48.6
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 1.2e-32 146.0 283 36.4
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 1.2e-32 146.0 170 45.9
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 1.6e-32 145.6 227 39.6
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 2.7e-32 144.8 140 50.7
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 3.5e-32 144.4 199 38.7
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 6.0e-32 143.7 131 53.4
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 7.8e-32 143.3 215 38.6
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 1.0e-31 142.9 230 39.6
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 1.3e-31 142.5 229 37.1
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 2.3e-31 141.7 212 39.6
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 2.3e-31 141.7 160 45.6
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 3.0e-31 141.4 229 38.9
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 3.0e-31 141.4 176 44.3
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 5.0e-31 140.6 159 47.2
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 5.0e-31 140.6 159 49.1
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 6.6e-31 140.2 222 38.7
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 6.6e-31 140.2 140 52.9
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 8.6e-31 139.8 171 46.8
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 1.5e-30 139.0 237 37.1
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 1.5e-30 139.0 284 34.9
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 1.5e-30 139.0 217 41.0
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 1.9e-30 138.7 142 47.9
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.9e-30 138.7 146 47.9
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.9e-30 138.7 146 48.6
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 1.9e-30 138.7 215 38.1
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 1.9e-30 138.7 157 48.4
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 1.9e-30 138.7 215 40.0
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 2.5e-30 138.3 172 43.0
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 4.3e-30 137.5 218 37.2
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 4.3e-30 137.5 218 37.2
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 5.6e-30 137.1 244 37.7
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 5.6e-30 137.1 146 46.6
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 5.6e-30 137.1 152 46.1
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 7.3e-30 136.7 194 41.8
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 7.3e-30 136.7 212 38.7
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 9.5e-30 136.3 151 46.4
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 9.5e-30 136.3 150 46.0
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 9.5e-30 136.3 140 50.0
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 9.5e-30 136.3 147 51.0
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 1.2e-29 136.0 179 44.7
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 1.2e-29 136.0 146 50.0
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 1.2e-29 136.0 197 41.6
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 1.2e-29 136.0 140 50.0
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 1.2e-29 136.0 140 50.0
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.6e-29 135.6 151 49.0
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 1.6e-29 135.6 151 49.0
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 2.1e-29 135.2 169 45.0
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 2.1e-29 135.2 146 46.6
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 2.1e-29 135.2 214 38.8
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 2.1e-29 135.2 230 36.5
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 2.1e-29 135.2 230 36.5
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 2.8e-29 134.8 196 41.3
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 2.8e-29 134.8 172 43.6
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 3.6e-29 134.4 210 40.0
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 3.6e-29 134.4 172 44.2
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 3.6e-29 134.4 209 37.8
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 4.7e-29 134.0 157 45.9
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 6.2e-29 133.7 145 45.5
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 6.2e-29 133.7 246 35.4
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 6.2e-29 133.7 178 41.6
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 6.2e-29 133.7 140 48.6
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 6.2e-29 133.7 180 40.0
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 1.1e-28 132.9 178 42.1
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.1e-28 132.9 178 42.1
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 1.1e-28 132.9 163 41.7
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 1.4e-28 132.5 173 42.8
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 1.4e-28 132.5 250 35.6
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 1.4e-28 132.5 164 40.2
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.8e-28 132.1 175 42.9
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 1.8e-28 132.1 184 40.8
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 1.8e-28 132.1 144 48.6
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 1.8e-28 132.1 170 44.1
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.3e-28 131.7 149 46.3
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 3.1e-28 131.3 184 42.9
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 3.1e-28 131.3 172 43.0
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 3.1e-28 131.3 231 37.2
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 5.2e-28 130.6 142 47.9
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 5.2e-28 130.6 156 44.9
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 5.2e-28 130.6 150 46.0
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 6.8e-28 130.2 156 45.5
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 6.8e-28 130.2 152 46.7
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 6.8e-28 130.2 140 47.9
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 8.9e-28 129.8 230 36.5
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 1.2e-27 129.4 154 46.1
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.0e-27 128.6 149 44.3
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 2.0e-27 128.6 146 45.9
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 2.0e-27 128.6 143 49.7
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 2.6e-27 128.3 154 46.1
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 2.6e-27 128.3 158 41.1
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 3.4e-27 127.9 186 40.9
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 3.4e-27 127.9 192 39.6
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 4.4e-27 127.5 160 45.0
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 4.4e-27 127.5 156 44.9
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 4.4e-27 127.5 149 47.0
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 4.4e-27 127.5 144 43.8
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 4.4e-27 127.5 173 41.0
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 5.8e-27 127.1 222 35.6
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 5.8e-27 127.1 142 47.2
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 7.5e-27 126.7 219 37.0
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 7.5e-27 126.7 145 46.2
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 9.8e-27 126.3 140 45.7
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 9.8e-27 126.3 137 47.4
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 9.8e-27 126.3 159 44.7
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 9.8e-27 126.3 130 48.5
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 1.7e-26 125.6 192 39.1
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 2.2e-26 125.2 154 44.8
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 2.9e-26 124.8 170 40.6
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 6.4e-26 123.6 154 44.8
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 8.3e-26 123.2 150 42.0
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 8.3e-26 123.2 157 41.4
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 1.1e-25 122.9 169 42.6
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 1.1e-25 122.9 152 43.4
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 2.4e-25 121.7 172 41.3
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 3.2e-25 121.3 147 42.9
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 4.1e-25 120.9 140 46.4
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 4.1e-25 120.9 167 39.5
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 4.1e-25 120.9 166 39.8
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 4.1e-25 120.9 222 34.2
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 9.2e-25 119.8 166 41.6
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.2e-24 119.4 209 35.9
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.6e-24 119.0 209 35.9
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 1.6e-24 119.0 139 41.7
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.0e-24 118.6 147 45.6
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 3.5e-24 117.9 209 34.9
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 1.0e-23 116.3 144 42.4
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 1.3e-23 115.9 141 44.7
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 5.0e-23 114.0 140 43.6
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 5.0e-23 114.0 140 43.6
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 6.6e-23 113.6 161 36.6
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 1.1e-22 112.8 220 35.0
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 1.1e-22 112.8 111 49.5
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 5.6e-22 110.5 114 47.4
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.2e-21 109.4 154 40.3
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 2.8e-21 108.2 147 41.5
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 3.6e-21 107.8 259 31.3
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 3.6e-21 107.8 168 40.5
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 1.8e-20 105.5 141 42.6
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 3.1e-20 104.8 114 47.4
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 6.8e-20 103.6 175 37.1
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 8.9e-20 103.2 118 44.1
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 2.6e-19 101.7 108 49.1
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 9.9e-19 99.8 246 29.7
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 2.9e-18 98.2 118 49.2
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 3.7e-18 97.8 92 52.2
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.4e-17 95.9 105 49.5
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 7.1e-17 93.6 110 43.6
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 3.5e-16 91.3 107 45.8
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 1.1e-14 86.3 105 43.8
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 1.5e-14 85.9 115 40.0
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 3.6e-13 81.3 133 33.8
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 8.9e-12 76.6 92 42.4
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 3.4e-11 74.7 79 45.6
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 3.4e-11 74.7 171 28.7
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 5.4e-09 67.4 90 43.3
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 6.0e-08 63.9 112 33.0
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 2.5e-06 58.5 112 33.0
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 5.6e-06 57.4 55 45.5


User provided reference genes

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