Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0033s0048 Marchantia polymorpha HOM05D006805 ORTHO05D008656 1.1e-242 842.8 411 100.0
AagrBONN_evm.TU.Sc2ySwM_228.1023 Anthoceros agrestis HOM05D006805 ORTHO05D001783 2.8e-108 396.4 401 48.6
Pp3c15_5920 Physcomitrium patens HOM05D006805 ORTHO05D008656 3.0e-94 349.7 414 46.6
Pp3c9_15730 Physcomitrium patens HOM05D006805 ORTHO05D008656 4.9e-89 332.4 407 45.0
SMO141G0060 Selaginella moellendorffii HOM05D006805 ORTHO05D008656 3.5e-87 326.2 356 47.8
Migut.H02510 Erythranthe guttata HOM05D006805 ORTHO05D008656 3.0e-86 323.2 401 45.1
HanXRQChr14g0441241 Helianthus annuus HOM05D006805 ORTHO05D008656 3.3e-85 319.7 372 43.3
QL06p035053 Quercus lobata HOM05D006805 ORTHO05D008656 9.5e-85 318.2 408 41.2
ECA238G0382 Erigeron canadensis HOM05D006805 ORTHO05D008656 3.6e-84 316.2 369 41.5
TAR381G0553 Trochodendron aralioides HOM05D006805 ORTHO05D008656 1.4e-83 314.3 406 40.6
Nn1g05800 Nelumbo nucifera HOM05D006805 ORTHO05D008656 1.8e-83 313.9 409 40.3
TWI73G0963 Tripterygium wilfordii HOM05D006805 ORTHO05D008656 1.8e-83 313.9 404 41.6
PSO731G0058 Papaver somniferum HOM05D006805 ORTHO05D008656 6.8e-83 312.0 402 44.0
CiPaw.08G138000 Carya illinoinensis HOM05D006805 ORTHO05D008656 8.9e-83 311.6 406 41.1
Potri.007G019400 Populus trichocarpa HOM05D006805 ORTHO05D008656 1.2e-82 311.2 414 40.8
Atru.chr3.728 Acer truncatum HOM05D006805 ORTHO05D008656 3.4e-82 309.7 398 42.0
Aqoxy5G01548 Aquilegia oxysepala HOM05D006805 ORTHO05D008656 3.4e-82 309.7 387 42.9
Gorai.003G012500 Gossypium raimondii HOM05D006805 ORTHO05D008656 8.4e-81 305.1 416 41.6
Ciclev10025725m.g Citrus clementina HOM05D006805 ORTHO05D008656 1.1e-80 304.7 359 42.9
Prupe.7G161800 Prunus persica HOM05D006805 ORTHO05D008656 1.1e-80 304.7 404 43.1
Rhsim08G0122900 Rhododendron simsii HOM05D006805 ORTHO05D008656 1.1e-80 304.7 400 41.8
MSTRG.2490 Avicennia marina HOM05D006805 ORTHO05D008656 1.9e-80 303.9 398 41.7
Cfa006913 Carpinus fangiana HOM05D006805 ORTHO05D008656 3.2e-80 303.1 405 41.2
Gohir.D03G012200 Gossypium hirsutum HOM05D006805 ORTHO05D008656 3.2e-80 303.1 416 41.3
arahy.Tifrunner.gnm1.ann1.FKKR7E Arachis hypogaea HOM05D006805 ORTHO05D008656 4.1e-80 302.8 375 43.7
Cc07_g10060 Coffea canephora HOM05D006805 ORTHO05D008656 5.4e-80 302.4 392 42.1
Gohir.A02G167800 Gossypium hirsutum HOM05D006805 ORTHO05D008656 5.4e-80 302.4 416 40.6
Lalb_Chr16g0391011 Lupinus albus HOM05D006805 ORTHO05D008656 5.4e-80 302.4 391 41.7
ATR1154G040 Amborella trichopoda HOM05D006805 ORTHO05D008656 1.2e-79 301.2 350 44.6
CSS0042312 Camellia sinensis var. sinensis HOM05D006805 ORTHO05D008656 2.7e-79 300.1 400 40.5
Thecc.01G027300 Theobroma cacao HOM05D006805 ORTHO05D008656 2.7e-79 300.1 396 41.9
CAN.G358.30 Capsicum annuum HOM05D006805 ORTHO05D008656 4.6e-79 299.3 399 40.4
Duzib147G1209 Durio zibethinus HOM05D006805 ORTHO05D008656 7.8e-79 298.5 390 42.3
CANSAT01G1867 Cannabis sativa HOM05D006805 ORTHO05D008656 1.7e-78 297.4 427 38.4
THA.LOC104804245 Tarenaya hassleriana HOM05D006805 ORTHO05D008656 1.7e-78 297.4 403 39.7
Glyma.02G052900 Glycine max HOM05D006805 ORTHO05D008656 2.3e-78 297.0 391 43.0
Peaxi162Scf00418g00926 Petunia axillaris HOM05D006805 ORTHO05D008656 2.3e-78 297.0 385 41.0
Hma1.2p1_0913F.1_g235930 Hydrangea macrophylla HOM05D006805 ORTHO05D008656 3.0e-78 296.6 399 41.1
Lj4g0018076 Lotus japonicus HOM05D006805 ORTHO05D008656 5.1e-78 295.8 391 41.7
GSVIVG01018866001 Vitis vinifera HOM05D006805 ORTHO05D008656 8.6e-78 295.0 367 43.1
C01p02610 Brassica napus HOM05D006805 ORTHO05D008656 1.1e-77 294.7 411 38.9
Medtr8g076840 Medicago truncatula HOM05D006805 ORTHO05D008656 1.1e-77 294.7 404 40.8
Solyc02g084810.3 Solanum lycopersicum HOM05D006805 ORTHO05D008656 2.5e-77 293.5 399 39.8
arahy.Tifrunner.gnm1.ann1.P9L48X Arachis hypogaea HOM05D006805 ORTHO05D008656 3.3e-77 293.1 380 42.6
Hund16454 Selenicereus undatus HOM05D006805 ORTHO05D008656 3.3e-77 293.1 386 42.7
Psat4g096160 Pisum sativum HOM05D006805 ORTHO05D008656 4.3e-77 292.7 398 40.2
COL.COLO4_22005 Corchorus olitorius HOM05D006805 ORTHO05D008656 5.6e-77 292.4 367 43.3
Sopen02g029480 Solanum pennellii HOM05D006805 ORTHO05D008656 5.6e-77 292.4 399 39.6
BcaNung00732 Brassica carinata HOM05D006805 ORTHO05D008656 7.3e-77 292.0 404 39.4
BolC1t00250H Brassica oleracea HOM05D006805 ORTHO05D008656 7.3e-77 292.0 402 39.8
VMungo0251G3732 Vigna mungo HOM05D006805 ORTHO05D008656 7.3e-77 292.0 410 42.0
Phvul.003G257300 Phaseolus vulgaris HOM05D006805 ORTHO05D008656 1.2e-76 291.2 386 41.5
PGR102G0609 Punica granatum HOM05D006805 ORTHO05D008656 1.6e-76 290.8 404 39.1
HPP92_008328 Vanilla planifolia HOM05D006805 ORTHO05D008656 2.8e-76 290.0 369 43.1
Dinv40030 Davidia involucrata HOM05D006805 ORTHO05D008656 3.6e-76 289.7 433 38.1
Sed0012409 Sechium edule HOM05D006805 ORTHO05D008656 4.7e-76 289.3 404 40.8
CsaV3_6G046700 Cucumis sativus L. HOM05D006805 ORTHO05D008656 8.1e-76 288.5 408 40.0
MD15G1252400 Malus domestica HOM05D006805 ORTHO05D008656 1.1e-75 288.1 410 40.2
CARHR244770 Cardamine hirsuta HOM05D006805 ORTHO05D008656 1.4e-75 287.7 402 38.3
Sp7g34100 Schrenkiella parvula HOM05D006805 ORTHO05D008656 1.4e-75 287.7 387 39.5
RcHm_v2.0_Chr2g0100411 Rosa chinensis HOM05D006805 ORTHO05D008656 6.8e-75 285.4 411 38.0
Carub.0007s0387 Capsella rubella HOM05D006805 ORTHO05D008656 8.9e-75 285.0 396 38.9
Thhalv10000178m.g Eutrema salsugineum HOM05D006805 ORTHO05D008656 1.5e-74 284.3 394 39.1
AL7G14650 Arabidopsis lyrata HOM05D006805 ORTHO05D008656 2.6e-74 283.5 405 38.0
Haze_03843 Corylus avellana HOM05D006805 ORTHO05D008656 2.6e-74 283.5 465 36.6
Thhalv10025347m.g Eutrema salsugineum HOM05D006805 ORTHO05D008656 4.4e-74 282.7 375 39.7
BraA01t00229Z Brassica rapa HOM05D006805 ORTHO05D008656 7.6e-74 282.0 408 38.7
Manes.01G140000 Manihot esculenta HOM05D006805 ORTHO05D008656 9.9e-74 281.6 374 40.1
Eucgr.J02381 Eucalyptus grandis HOM05D006805 ORTHO05D008656 2.2e-73 280.4 367 42.2
A01p02400 Brassica napus HOM05D000394 ORTHO05D008656 6.4e-73 278.9 434 37.1
FvH4_1g12510 Fragaria vesca HOM05D006805 ORTHO05D008656 8.4e-73 278.5 391 39.1
MELO3C007867.2 Cucumis melo HOM05D006805 ORTHO05D008656 1.4e-72 277.7 442 37.3
Nitab4.5_0004708g0010 Nicotiana tabacum HOM05D006805 ORTHO05D008656 2.4e-72 276.9 364 40.4
Sabra07G0016600 Salix brachista HOM05D006805 ORTHO05D008656 2.1e-71 273.9 437 36.6
SGA_v2.0_scaffold51G18803 Striga asiatica HOM05D006805 ORTHO05D008656 4.6e-71 272.7 450 37.1
DCAR_025973 Daucus carota HOM05D006805 ORTHO05D008656 6.0e-71 272.3 390 38.7
AT4G36440 Arabidopsis thaliana HOM05D006805 ORTHO05D008656 7.8e-71 271.9 406 37.2
Duzib264G1030 Durio zibethinus HOM05D006805 ORTHO05D008656 1.5e-69 267.7 420 38.3
FAN19G2522 Fragaria x ananassa HOM05D006805 ORTHO05D008656 1.5e-69 267.7 403 38.0
AUR62007618 Chenopodium quinoa HOM05D006805 ORTHO05D008656 2.5e-69 266.9 335 42.4
vmacro17722 Vaccinium macrocarpon HOM05D006805 ORTHO05D008656 2.4e-67 260.4 318 44.3
CDE06G0805 Ceratophyllum demersum HOM05D006805 ORTHO05D008656 4.4e-66 256.1 353 39.1
BcaNung05308 Brassica carinata HOM05D000394 ORTHO05D000299 2.2e-65 253.8 344 39.5
Nitab4.5_0000723g0180 Nicotiana tabacum HOM05D006805 ORTHO05D008656 4.9e-65 252.7 376 37.8
SalBow8G5631 Salvia bowleyana HOM05D006805 ORTHO05D008656 1.1e-64 251.5 413 36.3
Hma1.2p1_0913F.1_g235940 Hydrangea macrophylla HOM05D006805 ORTHO05D008656 1.0e-62 245.0 293 45.1
Ca_22341_v3 Cicer arietinum L. HOM05D006805 ORTHO05D008656 1.3e-62 244.6 406 38.2
unitig_61.g26353 Utricularia gibba HOM05D006805 ORTHO05D008656 8.1e-60 235.3 315 41.3
FAN23G0481 Fragaria x ananassa HOM05D006805 ORTHO05D008656 1.8e-59 234.2 408 34.6
Hma1.2p1_2955F.1_g330740 Hydrangea macrophylla HOM05D006805 ORTHO05D008656 2.4e-59 233.8 339 40.7
ClCG01G019940 Citrullus lanatus HOM05D006531 ORTHO05D008656 9.0e-59 231.9 443 34.8
MBI16_g23836_MAGBIO Magnolia biondii HOM05D006805 ORTHO05D008656 8.4e-57 225.3 366 38.5
Lj4C209T2 Lonicera japonica HOM05D006805 ORTHO05D008656 6.7e-54 215.7 254 45.3
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 1.1e-51 208.4 252 44.8
Aa31LG6G13250 Aethionema arabicum HOM05D006805 ORTHO05D008656 3.1e-51 206.8 312 36.5
AUR62004104 Chenopodium quinoa HOM05D006805 ORTHO05D008656 4.0e-51 206.5 220 46.4
FAN26G3258 Fragaria x ananassa HOM05D006805 ORTHO05D008656 2.3e-46 190.7 398 32.4
Sc03g0003190 Simmondsia chinensis HOM05D006805 ORTHO05D008656 2.6e-42 177.2 201 45.8
EL10As8g23891 Beta vulgaris HOM05D006805 ORTHO05D008656 3.8e-41 173.3 208 43.3
SGA_v2.0_scaffold7G03543 Striga asiatica HOM05D006805 ORTHO05D003527 8.4e-41 172.2 215 43.3
arahy.Tifrunner.gnm1.ann1.CY3TH7 Arachis hypogaea HOM05D006805 ORTHO05D008656 9.7e-37 158.7 416 29.6
Lsat_1_v5_gn_2_78040 Lactuca sativa HOM05D006805 ORTHO05D008656 3.4e-34 150.2 217 41.5
HanXRQChr12g0370271 Helianthus annuus HOM05D006805 ORTHO05D008656 7.2e-32 142.5 217 35.9
HanXRQChr09g0256121 Helianthus annuus HOM05D006805 ORTHO05D008656 2.0e-26 124.4 139 45.3
Zm00001eb128340 Zea mays HOM05D006805 ORTHO05D008656 2.9e-25 120.6 209 34.9
Dinv10224 Davidia involucrata HOM05D006805 ORTHO05D008656 5.0e-25 119.8 140 44.3
TPR.G21535 Trifolium pratense HOM05D006805 ORTHO05D008656 8.5e-25 119.0 170 38.2
Glyma.16G133100 Glycine max HOM05D006805 ORTHO05D008656 1.9e-24 117.9 122 45.9
TPR.G21539 Trifolium pratense HOM05D000894 ORTHO05D001833 2.7e-23 114.0 136 42.6
Cpa.g.sc6.179 Carica papaya HOM05D006805 ORTHO05D008656 7.4e-21 105.9 395 24.3
Glyma.10G129950 Glycine max HOM05D006805 ORTHO05D008656 1.8e-19 101.3 107 49.5
Pp3c26_9360 Physcomitrium patens HOM05D006805 ORTHO05D008656 2.4e-19 100.9 120 45.8
AL6G38800 Arabidopsis lyrata HOM05D006805 ORTHO05D008656 5.9e-18 96.3 161 36.0
HanXRQChr16g0499431 Helianthus annuus HOM05D006805 ORTHO05D008656 2.9e-17 94.0 281 28.8
EL10Ac7g17413 Beta vulgaris HOM05D006805 ORTHO05D008656 1.4e-14 85.1 89 40.4
Lj2g0002148 Lotus japonicus HOM05D006805 ORTHO05D008656 1.2e-10 72.0 108 35.2
MD02G1139100 Malus domestica HOM05D006805 ORTHO05D008656 1.3e-09 68.6 99 41.4
Os01g0262700 Oryza sativa ssp. japonica HOM05D006805 ORTHO05D008656 5.0e-09 66.6 124 31.5


User provided reference genes

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