Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0032s0102 Marchantia polymorpha HOM05D008293 ORTHO05D010504 4.5e-267 924.1 483 100.0
AagrBONN_evm.TU.Sc2ySwM_344.4932 Anthoceros agrestis HOM05D008293 ORTHO05D010504 1.2e-179 633.6 445 73.9
Pp3c19_10600 Physcomitrium patens HOM05D008293 ORTHO05D010504 2.9e-173 612.5 464 67.7
Pp3c22_22050 Physcomitrium patens HOM05D008293 ORTHO05D010504 1.9e-169 599.7 434 69.6
SMO118G0404 Selaginella moellendorffii HOM05D008293 ORTHO05D010504 2.9e-165 585.9 431 69.4
TAR627G0720 Trochodendron aralioides HOM05D008293 ORTHO05D010504 1.5e-134 483.8 464 55.8
CBR_g40882 Chara braunii HOM05D008293 ORTHO05D010504 1.9e-132 476.9 434 59.4
Aqoxy4G00368 Aquilegia oxysepala HOM05D008293 ORTHO05D010504 5.5e-132 475.3 423 60.3
CSS0000482 Camellia sinensis var. sinensis HOM05D008293 ORTHO05D010504 3.6e-131 472.6 427 58.1
Actinidia18798 Actinidia chinensis HOM05D008293 ORTHO05D010504 4.3e-129 465.7 460 54.6
Hma1.2p1_2505F.1_g323420 Hydrangea macrophylla HOM05D008293 ORTHO05D010504 5.7e-129 465.3 423 57.2
PSO782G2569 Papaver somniferum HOM05D008293 ORTHO05D010504 5.7e-129 465.3 424 58.0
Rhsim04G0025400 Rhododendron simsii HOM05D008293 ORTHO05D010504 1.7e-128 463.8 428 58.4
Dinv14981 Davidia involucrata HOM05D008293 ORTHO05D010504 2.8e-128 463.0 429 56.9
Migut.M00735 Erythranthe guttata HOM05D008293 ORTHO05D010504 8.2e-128 461.5 419 56.3
GSVIVG01014211001 Vitis vinifera HOM05D008293 ORTHO05D010504 7.7e-126 454.9 425 57.2
COL.COLO4_24863 Corchorus olitorius HOM05D008293 ORTHO05D010504 5.0e-125 452.2 424 56.4
MD03G1241800 Malus domestica HOM05D008293 ORTHO05D010504 2.5e-124 449.9 465 53.1
QL08p026533 Quercus lobata HOM05D008293 ORTHO05D010504 4.2e-124 449.1 430 56.3
Gohir.D13G153400 Gossypium hirsutum HOM05D008293 ORTHO05D010504 9.4e-124 448.0 431 55.0
Thecc.07G109900 Theobroma cacao HOM05D008293 ORTHO05D010504 2.7e-123 446.4 463 53.8
Gorai.013G173300 Gossypium raimondii HOM05D008293 ORTHO05D010504 4.7e-123 445.7 433 55.2
Gohir.A13G148900 Gossypium hirsutum HOM05D008293 ORTHO05D010504 1.4e-122 444.1 423 55.3
Prupe.4G167100 Prunus persica HOM05D008293 ORTHO05D010504 2.6e-121 439.9 427 56.7
PGR083G2613 Punica granatum HOM05D008293 ORTHO05D010504 1.3e-120 437.6 428 54.9
Nitab4.5_0001145g0060 Nicotiana tabacum HOM05D008293 ORTHO05D010504 1.7e-120 437.2 426 54.5
HPP92_024759 Vanilla planifolia HOM05D008293 ORTHO05D010504 2.8e-120 436.4 433 54.5
Nitab4.5_0000246g0170 Nicotiana tabacum HOM05D008293 ORTHO05D010504 4.8e-120 435.6 426 54.7
PGSC0003DMG400012428 Solanum tuberosum HOM05D008293 ORTHO05D010504 1.4e-119 434.1 423 55.1
Atru.chr2.2164 Acer truncatum HOM05D008293 ORTHO05D010504 3.1e-119 433.0 427 54.3
CANSAT35G0405 Cannabis sativa HOM05D008293 ORTHO05D010504 1.5e-118 430.6 473 51.6
Peaxi162Scf00069g02232 Petunia axillaris HOM05D008293 ORTHO05D010504 7.7e-118 428.3 423 54.1
PRCOL_00003950 Prasinoderma coloniale HOM05D008293 ORTHO05D010504 7.7e-118 428.3 429 54.5
Sopen07g030780 Solanum pennellii HOM05D008293 ORTHO05D010504 5.0e-117 425.6 423 53.2
CAN.G162.9 Capsicum annuum HOM05D008293 ORTHO05D010504 9.4e-116 421.4 420 54.3
Nn1g09105 Nelumbo nucifera HOM05D008293 ORTHO05D010504 2.0e-113 413.7 418 55.3
Haze_09337 Corylus avellana HOM05D008293 ORTHO05D010504 1.7e-109 400.6 437 51.9
SEGI_20639 Sequoiadendron giganteum HOM05D008293 ORTHO05D010504 4.2e-108 396.0 287 69.3
SGA_v2.0_scaffold55G19705 Striga asiatica HOM05D008293 ORTHO05D010504 4.0e-106 389.4 420 50.5
Ciclev10020583m.g Citrus clementina HOM05D008293 ORTHO05D010504 1.3e-104 384.4 382 54.2
Cc05_g11210 Coffea canephora HOM05D008293 ORTHO05D010504 9.1e-103 378.3 377 54.6
Solyc07g062543.1 Solanum lycopersicum HOM05D008293 ORTHO05D010504 3.5e-94 349.7 339 54.3
RcHm_v2.0_Chr5g0030831 Rosa chinensis HOM05D008293 ORTHO05D010504 1.4e-87 327.8 343 52.8
Ciclev10023335m.g Citrus clementina HOM05D008293 ORTHO05D010504 7.5e-73 278.9 411 41.8
Lj1A831T70 Lonicera japonica HOM05D008293 ORTHO05D010504 2.3e-69 267.3 262 54.6
RcHm_v2.0_Chr5g0031211 Rosa chinensis HOM05D008293 ORTHO05D010504 6.8e-66 255.8 341 46.3
Cpa.g.sc97.100 Carica papaya HOM05D008293 ORTHO05D010504 1.3e-56 224.9 203 58.1
Ca_29004_v3 Cicer arietinum L. HOM05D008293 ORTHO05D010504 3.9e-53 213.4 244 48.4
AagrBONN_evm.TU.Sc2ySwM_344.893 Anthoceros agrestis HOM05D008293 ORTHO05D010504 2.4e-47 194.1 146 69.9
RcHm_v2.0_Chr7g0194341 Rosa chinensis HOM05D008293 ORTHO05D010504 9.6e-44 182.2 233 48.5
RcHm_v2.0_Chr5g0031411 Rosa chinensis HOM05D008293 ORTHO05D010504 9.3e-39 165.6 221 46.2
Atru.chr2.2165 Acer truncatum HOM05D003516 ORTHO05D004068 6.7e-37 159.5 186 49.5
SEGI_30761 Sequoiadendron giganteum HOM05D008293 ORTHO05D010504 1.5e-36 158.3 138 60.9
Lj1P831T51 Lonicera japonica HOM05D008293 ORTHO05D010504 4.0e-34 150.2 168 47.0
Cfa019577 Carpinus fangiana HOM05D008293 ORTHO05D010504 7.6e-33 146.0 137 53.3
Solyc07g062547.1 Solanum lycopersicum HOM05D008293 ORTHO05D010504 7.1e-31 139.4 137 51.1
MD10G1199100 Malus domestica HOM05D008293 ORTHO05D010504 1.8e-26 124.8 171 43.3
Actinidia35215 Actinidia chinensis HOM05D008293 ORTHO05D010504 1.5e-20 105.1 272 32.0
Ca_29048_v3 Cicer arietinum L. HOM05D008293 ORTHO05D010504 1.4e-18 98.6 102 46.1
SEGI_40959 Sequoiadendron giganteum HOM05D008293 ORTHO05D386060 2.0e-12 78.2 61 67.2
Sopen06g001050 Solanum pennellii HOM05D008293 ORTHO05D023155 4.7e-06 57.0 85 42.4


User provided reference genes

Program Settings