Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 2.4e-265 918.3 474 100.0
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 3.6e-128 462.6 448 52.0
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 2.2e-125 453.4 461 52.5
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 5.4e-124 448.7 447 52.8
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 1.6e-123 447.2 470 48.7
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.6e-123 447.2 447 52.8
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 2.0e-123 446.8 444 52.3
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 2.7e-123 446.4 470 48.5
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 2.7e-123 446.4 436 52.1
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 3.5e-123 446.0 445 52.1
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 7.8e-123 444.9 465 50.5
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 1.7e-122 443.7 447 50.6
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 1.7e-122 443.7 442 51.8
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 2.3e-122 443.4 471 49.3
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 3.9e-122 442.6 439 52.6
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 6.6e-122 441.8 473 49.7
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 8.6e-122 441.4 438 52.5
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 8.6e-122 441.4 443 51.5
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 1.1e-121 441.0 489 49.7
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 1.5e-121 440.7 438 53.2
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 1.5e-121 440.7 448 50.9
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 2.5e-121 439.9 447 51.7
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 3.3e-121 439.5 440 51.4
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 5.6e-121 438.7 457 50.1
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 7.3e-121 438.3 473 49.3
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.2e-120 437.6 444 50.7
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.2e-120 437.6 440 51.8
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 2.8e-120 436.4 444 51.4
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 3.6e-120 436.0 447 50.1
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 3.6e-120 436.0 440 52.3
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 4.7e-120 435.6 440 52.7
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 8.1e-120 434.9 440 50.9
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 8.1e-120 434.9 439 51.3
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 8.1e-120 434.9 439 51.3
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 1.4e-119 434.1 440 51.8
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 1.8e-119 433.7 454 50.7
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 1.8e-119 433.7 441 51.7
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 4.0e-119 432.6 457 50.5
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 5.2e-119 432.2 439 50.8
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 6.8e-119 431.8 444 51.4
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 6.8e-119 431.8 442 51.1
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 1.2e-118 431.0 473 48.8
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 1.5e-118 430.6 459 49.5
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 2.0e-118 430.3 443 52.1
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 2.0e-118 430.3 462 50.0
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 2.0e-118 430.3 443 51.5
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 2.0e-118 430.3 466 48.5
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 2.6e-118 429.9 443 51.2
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 3.4e-118 429.5 441 50.6
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 4.4e-118 429.1 476 48.7
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 5.8e-118 428.7 441 51.5
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 5.8e-118 428.7 441 51.0
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 5.8e-118 428.7 441 51.0
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 9.9e-118 427.9 440 50.2
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 9.9e-118 427.9 458 49.1
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 9.9e-118 427.9 461 48.8
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 1.7e-117 427.2 468 48.7
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 1.7e-117 427.2 449 50.8
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 2.2e-117 426.8 461 49.9
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 2.2e-117 426.8 461 48.6
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 2.9e-117 426.4 448 50.0
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 2.9e-117 426.4 440 50.7
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 3.7e-117 426.0 448 50.4
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 3.7e-117 426.0 443 51.2
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 3.7e-117 426.0 446 50.9
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 4.9e-117 425.6 466 50.4
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 4.9e-117 425.6 440 51.4
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 4.9e-117 425.6 472 47.5
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 4.9e-117 425.6 464 47.8
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 6.4e-117 425.2 449 49.0
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 1.4e-116 424.1 435 50.3
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 1.9e-116 423.7 441 50.3
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 3.2e-116 422.9 457 51.6
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 4.1e-116 422.5 451 48.3
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 4.1e-116 422.5 454 49.1
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 9.2e-116 421.4 472 49.4
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 9.2e-116 421.4 439 50.6
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 9.2e-116 421.4 465 48.8
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 9.2e-116 421.4 465 48.8
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 2.1e-115 420.2 448 50.2
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.1e-115 420.2 456 49.6
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 3.5e-115 419.5 465 48.8
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 3.0e-114 416.4 465 48.6
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 3.9e-114 416.0 440 49.5
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 6.6e-114 415.2 465 48.6
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 3.6e-112 409.5 468 47.9
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 4.7e-112 409.1 468 48.7
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 1.1e-111 407.9 403 54.8
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 1.4e-111 407.5 403 54.6
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 1.8e-111 407.1 445 49.9
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 4.0e-111 406.0 470 46.0
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.6e-110 403.3 400 52.5
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 4.9e-109 399.1 500 45.6
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 3.2e-108 396.4 539 43.2
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 9.2e-108 394.8 440 49.5
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 1.6e-99 367.5 371 51.5
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.0e-98 364.8 440 45.9
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 8.7e-98 361.7 331 54.7
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 1.1e-97 361.3 462 43.7
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.8e-95 354.0 383 48.0
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 4.5e-94 349.4 329 53.8
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 1.7e-93 347.4 448 44.6
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.2e-92 342.8 475 42.7
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.8e-90 337.4 367 46.9
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 2.9e-85 320.1 458 41.5
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.2e-78 298.1 239 61.1
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.2e-78 298.1 239 61.1
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 2.5e-76 290.4 323 48.0
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 1.3e-72 278.1 327 45.6
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 1.1e-71 275.0 241 54.8
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.3e-69 268.1 231 57.6
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 1.9e-60 237.7 253 51.0
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 5.7e-57 226.1 205 53.7
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 7.4e-57 225.7 201 54.2
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 9.7e-57 225.3 300 45.7
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 9.4e-52 208.8 185 55.7
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 6.1e-51 206.1 513 28.7
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 1.8e-47 194.5 230 47.0
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 3.1e-47 193.7 166 56.6
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 4.5e-46 189.9 178 53.4
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 2.1e-43 181.0 259 42.1
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 2.8e-40 170.6 157 55.4
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 1.2e-38 165.2 208 44.2
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.5e-38 163.7 216 44.4
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 6.1e-35 152.9 196 44.9
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 4.4e-33 146.7 198 39.9
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 5.0e-29 133.3 487 30.4
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.8e-26 124.8 156 41.7
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 6.8e-26 122.9 167 41.9
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 3.4e-25 120.6 154 43.5
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 5.7e-25 119.8 142 43.7
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.5e-17 95.1 153 37.3
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.7e-14 84.3 114 40.4
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 2.5e-12 77.8 152 34.2
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 5.6e-12 76.6 48 72.9
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 9.5e-12 75.9 148 33.1
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 9.2e-07 59.3 475 23.4
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 2.1e-06 58.2 45 66.7


User provided reference genes

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