Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0032s0065 Marchantia polymorpha HOM05D003642 ORTHO05D004460 1.6e-263 912.1 437 100.0
Mapoly0028s0144 Marchantia polymorpha HOM05D003642 ORTHO05D004460 3.7e-111 406.0 402 50.7
Mapoly0005s0249 Marchantia polymorpha HOM05D003642 ORTHO05D004460 5.2e-65 252.7 288 45.1
SEGI_33073 Sequoiadendron giganteum HOM05D003642 ORTHO05D004460 4.4e-64 249.6 327 41.0
ATR0820G225 Amborella trichopoda HOM05D003642 ORTHO05D004460 5.8e-64 249.2 366 38.0
Thhalv10007826m.g Eutrema salsugineum HOM05D003642 ORTHO05D004460 8.4e-63 245.4 282 45.4
Mapoly0001s0264 Marchantia polymorpha HOM05D003642 ORTHO05D004460 1.9e-62 244.2 330 40.0
Sp1g06910 Schrenkiella parvula HOM05D003642 ORTHO05D004460 1.2e-61 241.5 424 36.3
Glyma.12G088000 Glycine max HOM05D003642 ORTHO05D004460 2.1e-61 240.7 327 40.1
MBI17_g01557_MAGBIO Magnolia biondii HOM05D003642 ORTHO05D004460 2.1e-61 240.7 367 35.4
MBI01_g03598_MAGBIO Magnolia biondii HOM05D003642 ORTHO05D004460 4.6e-61 239.6 306 39.9
BcaB07g34070 Brassica carinata HOM05D003642 ORTHO05D004460 7.8e-61 238.8 282 43.6
AT1G08280 Arabidopsis thaliana HOM05D003642 ORTHO05D004460 1.7e-60 237.7 258 45.3
AL1G18680 Arabidopsis lyrata HOM05D003642 ORTHO05D004460 2.3e-60 237.3 259 45.2
TPR.G17216 Trifolium pratense HOM05D003642 ORTHO05D004460 2.3e-60 237.3 320 40.3
SMO145G0137 Selaginella moellendorffii HOM05D003642 ORTHO05D004460 3.9e-60 236.5 321 41.1
C05p06380 Brassica napus HOM05D003642 ORTHO05D004460 8.6e-60 235.3 292 44.2
BolC5t29393H Brassica oleracea HOM05D003642 ORTHO05D004460 8.6e-60 235.3 292 44.2
CDE08G0849 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 8.6e-60 235.3 301 40.2
Carub.0001s0763 Capsella rubella HOM05D003642 ORTHO05D004460 1.1e-59 235.0 267 46.8
THA.LOC104800538 Tarenaya hassleriana HOM05D003642 ORTHO05D004460 1.1e-59 235.0 435 35.2
BcaB07g34071 Brassica carinata HOM05D003642 ORTHO05D004460 1.5e-59 234.6 282 44.3
CDE06G1048 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 2.5e-59 233.8 337 38.3
Aqoxy2G01228 Aquilegia oxysepala HOM05D003642 ORTHO05D004460 3.3e-59 233.4 318 40.3
BraA06t23738Z Brassica rapa HOM05D003642 ORTHO05D004460 3.3e-59 233.4 282 42.9
CsaV3_6G015050 Cucumis sativus L. HOM05D003642 ORTHO05D004460 3.3e-59 233.4 352 39.5
Nn2g14115 Nelumbo nucifera HOM05D003642 ORTHO05D004460 3.3e-59 233.4 354 37.6
VMungo1127G0822 Vigna mungo HOM05D003642 ORTHO05D004460 3.3e-59 233.4 280 44.3
Lj3g0020685 Lotus japonicus HOM05D003642 ORTHO05D004460 4.3e-59 233.0 281 44.1
Glyma.12G088100 Glycine max HOM05D003642 ORTHO05D004460 7.3e-59 232.3 301 41.2
Gohir.D07G113300 Gossypium hirsutum HOM05D003642 ORTHO05D004460 7.3e-59 232.3 340 39.4
Pp3c14_26500 Physcomitrium patens HOM05D003642 ORTHO05D004460 7.3e-59 232.3 289 43.6
Gorai.009G086400 Gossypium raimondii HOM05D003642 ORTHO05D004460 9.6e-59 231.9 339 37.5
THA.LOC104826418 Tarenaya hassleriana HOM05D003642 ORTHO05D004460 9.6e-59 231.9 282 44.0
CARHR008130 Cardamine hirsuta HOM05D003642 ORTHO05D004460 1.2e-58 231.5 282 43.3
PGSC0003DMG400007143 Solanum tuberosum HOM05D003642 ORTHO05D004460 1.2e-58 231.5 361 37.4
Gorai.001G121600 Gossypium raimondii HOM05D003642 ORTHO05D004460 1.6e-58 231.1 340 39.1
CDE02G0744 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 2.1e-58 230.7 302 37.7
Medtr4g053520 Medicago truncatula HOM05D003642 ORTHO05D004460 2.1e-58 230.7 252 45.2
Phvul.011G093000 Phaseolus vulgaris HOM05D003642 ORTHO05D004460 2.1e-58 230.7 279 44.1
A06p05300 Brassica napus HOM05D003642 ORTHO05D004460 2.8e-58 230.3 282 42.2
Ca_19399_v3 Cicer arietinum L. HOM05D003642 ORTHO05D004460 3.6e-58 229.9 275 42.9
Glyma.11G184200 Glycine max HOM05D003642 ORTHO05D004460 3.6e-58 229.9 278 44.2
CiPaw.13G137400 Carya illinoinensis HOM05D003642 ORTHO05D004460 4.7e-58 229.6 340 39.4
COL.COLO4_19910 Corchorus olitorius HOM05D003642 ORTHO05D004460 4.7e-58 229.6 338 38.5
MELO3C021417.2 Cucumis melo HOM05D003642 ORTHO05D004460 4.7e-58 229.6 352 38.9
Sc12g0004420 Simmondsia chinensis HOM05D003642 ORTHO05D004460 4.7e-58 229.6 279 45.2
Cfa010037 Carpinus fangiana HOM05D003642 ORTHO05D004460 6.2e-58 229.2 408 35.8
Glyma.12G088200 Glycine max HOM05D003642 ORTHO05D004460 8.1e-58 228.8 279 43.4
TAR369G0447 Trochodendron aralioides HOM05D003642 ORTHO05D004460 8.1e-58 228.8 334 38.9
Gohir.A05G081500 Gossypium hirsutum HOM05D003642 ORTHO05D004460 1.1e-57 228.4 339 37.2
Sopen06g030830 Solanum pennellii HOM05D003642 ORTHO05D004460 1.1e-57 228.4 361 37.4
HPP92_006804 Vanilla planifolia HOM05D003642 ORTHO05D004460 1.1e-57 228.4 273 43.2
Lalb_Chr03g0028031 Lupinus albus HOM05D003642 ORTHO05D004460 1.4e-57 228.0 340 37.9
Potri.009G144000 Populus trichocarpa HOM05D003642 ORTHO05D004460 1.4e-57 228.0 334 38.3
Solyc06g074370.3 Solanum lycopersicum HOM05D003642 ORTHO05D004460 1.4e-57 228.0 361 37.4
Haze_23398 Corylus avellana HOM05D003642 ORTHO05D004460 2.4e-57 227.3 430 35.3
MD03G1142400 Malus domestica HOM05D003642 ORTHO05D004460 2.4e-57 227.3 361 36.8
Sabra04G0123900 Salix brachista HOM05D003642 ORTHO05D004460 2.4e-57 227.3 343 36.7
SGA_v2.0_scaffold22G09875 Striga asiatica HOM05D003642 ORTHO05D004460 2.4e-57 227.3 364 36.3
Thecc.09G285800 Theobroma cacao HOM05D003642 ORTHO05D004460 2.4e-57 227.3 342 37.4
TWI31G0358 Tripterygium wilfordii HOM05D003642 ORTHO05D004460 2.4e-57 227.3 341 38.4
MSTRG.18752 Avicennia marina HOM05D003642 ORTHO05D004460 3.1e-57 226.9 339 38.1
Ciclev10028611m.g Citrus clementina HOM05D003642 ORTHO05D004460 3.1e-57 226.9 276 42.8
Psat7g189000 Pisum sativum HOM05D003642 ORTHO05D004460 3.1e-57 226.9 279 42.7
MD11G1162900 Malus domestica HOM05D003642 ORTHO05D004460 4.0e-57 226.5 359 37.9
Rhsim13G0110200 Rhododendron simsii HOM05D003642 ORTHO05D004460 4.0e-57 226.5 361 38.2
PSO384G4986 Papaver somniferum HOM05D003642 ORTHO05D004460 5.2e-57 226.1 379 35.4
AagrBONN_evm.TU.Sc2ySwM_228.2668 Anthoceros agrestis HOM05D003642 ORTHO05D004460 6.8e-57 225.7 277 41.2
Gohir.A07G109500 Gossypium hirsutum HOM05D003642 ORTHO05D004460 6.8e-57 225.7 253 44.7
Nitab4.5_0002002g0040 Nicotiana tabacum HOM05D003642 ORTHO05D004460 6.8e-57 225.7 361 36.6
Sabra09G0111700 Salix brachista HOM05D003642 ORTHO05D004460 6.8e-57 225.7 331 38.1
Sabra09G0114400 Salix brachista HOM05D003642 ORTHO05D004460 6.8e-57 225.7 331 38.1
HPP92_026090 Vanilla planifolia HOM05D003642 ORTHO05D004460 1.2e-56 224.9 252 44.8
Duzib150G1635 Durio zibethinus HOM05D003642 ORTHO05D004460 1.5e-56 224.6 253 43.5
PGR102G1012 Punica granatum HOM05D003642 ORTHO05D004460 1.5e-56 224.6 365 37.3
ClCG02G022190 Citrullus lanatus HOM05D003642 ORTHO05D004460 2.0e-56 224.2 339 38.1
Potri.004G184200 Populus trichocarpa HOM05D003642 ORTHO05D004460 2.0e-56 224.2 344 36.3
Prupe.6G127500 Prunus persica HOM05D003642 ORTHO05D004460 2.0e-56 224.2 361 36.8
HPP92_025134 Vanilla planifolia HOM05D003642 ORTHO05D004460 2.0e-56 224.2 252 44.8
Lsat_1_v5_gn_6_40461 Lactuca sativa HOM05D003642 ORTHO05D004460 2.6e-56 223.8 278 41.7
Nitab4.5_0005324g0040 Nicotiana tabacum HOM05D003642 ORTHO05D004460 2.6e-56 223.8 361 36.3
Lj1A233T8 Lonicera japonica HOM05D003642 ORTHO05D004460 3.4e-56 223.4 368 35.9
SMO331G0026 Selaginella moellendorffii HOM05D003642 ORTHO05D004460 3.4e-56 223.4 301 42.2
Duzib170G0814 Durio zibethinus HOM05D003642 ORTHO05D004460 4.4e-56 223.0 345 35.7
Dinv29465 Davidia involucrata HOM05D003642 ORTHO05D004460 5.8e-56 222.6 267 41.9
Sed0019020 Sechium edule HOM05D003642 ORTHO05D004460 5.8e-56 222.6 341 37.0
Oeu002383.1 Olea europaea HOM05D003642 ORTHO05D004460 7.6e-56 222.2 366 34.4
Atru.chr3.3290 Acer truncatum HOM05D003642 ORTHO05D004460 9.9e-56 221.9 366 36.1
Peaxi162Scf00091g00013 Petunia axillaris HOM05D003642 ORTHO05D004460 9.9e-56 221.9 349 37.8
Gohir.D05G084500 Gossypium hirsutum HOM05D003642 ORTHO05D004460 1.7e-55 221.1 338 36.4
Manes.11G160800 Manihot esculenta HOM05D003642 ORTHO05D004460 2.2e-55 220.7 360 35.6
FvH4_3g24660 Fragaria vesca HOM05D003642 ORTHO05D004460 2.9e-55 220.3 340 37.9
RcHm_v2.0_Chr5g0044221 Rosa chinensis HOM05D003642 ORTHO05D004460 2.9e-55 220.3 361 36.6
TWI75G1212 Tripterygium wilfordii HOM05D003642 ORTHO05D004460 3.8e-55 219.9 340 39.4
SalBow6G1534 Salvia bowleyana HOM05D003642 ORTHO05D004460 4.9e-55 219.5 273 42.1
vmacro03307 Vaccinium macrocarpon HOM05D003642 ORTHO05D004460 1.1e-54 218.4 299 39.1
Eucgr.B03871 Eucalyptus grandis HOM05D003642 ORTHO05D004460 1.4e-54 218.0 341 36.1
FAN25G1659 Fragaria x ananassa HOM05D003642 ORTHO05D004460 1.4e-54 218.0 343 37.6
Actinidia24206 Actinidia chinensis HOM05D003642 ORTHO05D004460 1.9e-54 217.6 256 43.0
QL01p012516 Quercus lobata HOM05D003642 ORTHO05D004460 1.9e-54 217.6 370 36.2
Actinidia07238 Actinidia chinensis HOM05D003642 ORTHO05D004460 2.4e-54 217.2 361 36.0
HanXRQChr01g0024131 Helianthus annuus HOM05D003642 ORTHO05D004460 3.2e-54 216.9 418 33.7
TAR623G1689 Trochodendron aralioides HOM05D003642 ORTHO05D004460 3.2e-54 216.9 343 35.9
CANSAT54G0701 Cannabis sativa HOM05D003642 ORTHO05D004460 4.2e-54 216.5 363 36.4
FAN16G3636 Fragaria x ananassa HOM05D003642 ORTHO05D004460 4.2e-54 216.5 340 37.4
FAN21G1092 Fragaria x ananassa HOM05D003642 ORTHO05D004460 4.2e-54 216.5 340 37.6
PSO210G3660 Papaver somniferum HOM05D003642 ORTHO05D004460 4.2e-54 216.5 260 42.7
Lsat_1_v5_gn_1_61681 Lactuca sativa HOM05D003642 ORTHO05D004460 5.4e-54 216.1 418 34.0
Manes.04G004900 Manihot esculenta HOM05D003642 ORTHO05D004460 5.4e-54 216.1 343 36.4
SGA_v2.0_scaffold147G36369 Striga asiatica HOM05D003642 ORTHO05D004460 5.4e-54 216.1 358 37.4
EL10Ac7g15808 Beta vulgaris HOM05D003642 ORTHO05D004460 7.1e-54 215.7 253 44.3
AUR62009777 Chenopodium quinoa HOM05D003642 ORTHO05D004460 7.1e-54 215.7 364 35.4
AUR62039222 Chenopodium quinoa HOM05D003642 ORTHO05D004460 7.1e-54 215.7 339 36.9
Cc01_g09370 Coffea canephora HOM05D003642 ORTHO05D004460 7.1e-54 215.7 338 36.4
ECA248G0168 Erigeron canadensis HOM05D003642 ORTHO05D002466 9.3e-54 215.3 362 34.8
Rhsim13G0110400 Rhododendron simsii HOM05D003642 ORTHO05D004460 1.2e-53 214.9 271 41.7
unitig_0.g1479 Utricularia gibba HOM05D003642 ORTHO05D004460 1.2e-53 214.9 339 36.3
Ah.08g215830 Amaranthus hybridus HOM05D003642 ORTHO05D004460 1.6e-53 214.5 250 44.8
HanXRQChr11g0346801 Helianthus annuus HOM05D003642 ORTHO05D004460 2.1e-53 214.2 332 37.7
vmacro03308 Vaccinium macrocarpon HOM05D003642 ORTHO05D004460 4.6e-53 213.0 289 39.1
Nn6g34944 Nelumbo nucifera HOM05D003642 ORTHO05D004460 6.0e-53 212.6 239 44.4
CSS0018533 Camellia sinensis var. sinensis HOM05D003642 ORTHO05D004460 7.8e-53 212.2 333 36.0
Migut.D02354 Erythranthe guttata HOM05D003642 ORTHO05D004460 7.8e-53 212.2 365 35.1
DCAR_012184 Daucus carota HOM05D003642 ORTHO05D004460 1.0e-52 211.8 353 35.4
Gohir.A08G004800 Gossypium hirsutum HOM05D003642 ORTHO05D004460 1.0e-52 211.8 364 34.6
Gorai.004G009500 Gossypium raimondii HOM05D003642 ORTHO05D004460 1.3e-52 211.5 363 34.4
Zm00001eb147290 Zea mays HOM05D003642 ORTHO05D004460 1.3e-52 211.5 243 44.4
vmacro03309 Vaccinium macrocarpon HOM05D003642 ORTHO05D004460 2.3e-52 210.7 267 40.4
CAN.G919.22 Capsicum annuum HOM05D003642 ORTHO05D004460 3.9e-52 209.9 338 35.8
HanXRQChr12g0364601 Helianthus annuus HOM05D003642 ORTHO05D004460 5.1e-52 209.5 343 35.9
Eucgr.B03872 Eucalyptus grandis HOM05D003642 ORTHO05D004460 1.9e-51 207.6 272 41.5
Hma1.2p1_0305F.1_g119710 Hydrangea macrophylla HOM05D003642 ORTHO05D004460 1.9e-51 207.6 340 36.2
Hma1.2p1_0305F.1_g119720 Hydrangea macrophylla HOM05D003642 ORTHO05D004460 1.9e-51 207.6 340 36.2
Hma1.2p1_0578F.1_g182375 Hydrangea macrophylla HOM05D003642 ORTHO05D004460 1.9e-51 207.6 340 36.2
HPP92_011490 Vanilla planifolia HOM05D003642 ORTHO05D004460 2.5e-51 207.2 273 40.7
ECA233G1545 Erigeron canadensis HOM05D003642 ORTHO05D004460 7.3e-51 205.7 223 45.3
Os01g0858900 Oryza sativa ssp. japonica HOM05D003642 ORTHO05D004460 7.3e-51 205.7 261 41.8
Zm00001eb366950 Zea mays HOM05D003642 ORTHO05D004460 7.3e-51 205.7 365 34.5
Zm00001eb077930 Zea mays HOM05D003642 ORTHO05D004460 9.6e-51 205.3 281 40.6
CSS0027733 Camellia sinensis var. sinensis HOM05D003642 ORTHO05D004460 2.1e-50 204.1 248 41.1
CSS0037628 Camellia sinensis var. sinensis HOM05D003642 ORTHO05D004460 2.1e-50 204.1 248 41.1
Os12g0151500 Oryza sativa ssp. japonica HOM05D003642 ORTHO05D004460 1.8e-49 201.1 254 44.1
Os04g0506800 Oryza sativa ssp. japonica HOM05D003642 ORTHO05D004460 3.1e-49 200.3 289 40.1
Zm00001eb196980 Zea mays HOM05D003642 ORTHO05D004460 3.4e-48 196.8 252 44.0
arahy.Tifrunner.gnm1.ann1.H74NZW Arachis hypogaea HOM05D003642 ORTHO05D004460 1.3e-47 194.9 338 35.8
Zm00001eb426190 Zea mays HOM05D003642 ORTHO05D004460 2.4e-46 190.7 285 39.3
arahy.Tifrunner.gnm1.ann1.U1TIAA Arachis hypogaea HOM05D003642 ORTHO05D004460 2.1e-45 187.6 195 44.1
arahy.Tifrunner.gnm1.ann1.SR1X9W Arachis hypogaea HOM05D003642 ORTHO05D004460 1.5e-43 181.4 197 42.6
CiPaw.14G101500 Carya illinoinensis HOM05D003642 ORTHO05D004460 1.9e-43 181.0 342 33.9
Zm00001eb092710 Zea mays HOM05D003642 ORTHO05D004460 2.1e-42 177.6 255 40.0
unitig_899.g15371 Utricularia gibba HOM05D003642 ORTHO05D004460 3.1e-41 173.7 321 34.9
arahy.Tifrunner.gnm1.ann1.GDD8RQ Arachis hypogaea HOM05D003642 ORTHO05D004460 8.4e-39 165.6 198 41.4
unitig_746.g26606 Utricularia gibba HOM05D003642 ORTHO05D004460 8.4e-39 165.6 326 33.7
Pp3c15_22480 Physcomitrium patens HOM05D003642 ORTHO05D004460 5.3e-33 146.4 186 40.3
FAN11G1888 Fragaria x ananassa HOM05D003642 ORTHO05D004460 1.5e-32 144.8 340 31.2
TAR369G0931 Trochodendron aralioides HOM05D003642 ORTHO05D004460 2.1e-29 134.4 158 42.4
CBR_g16841 Chara braunii HOM05D003642 ORTHO05D004460 3.9e-28 130.2 238 32.4
Cpa.g.sc32.97 Carica papaya HOM05D003642 ORTHO05D004460 3.1e-25 120.6 363 29.8
unitig_899.g15372 Utricularia gibba HOM05D003642 ORTHO05D004460 4.5e-24 116.7 269 32.3
GSVIVG01036150001 Vitis vinifera HOM05D003642 ORTHO05D004460 5.9e-24 116.3 341 28.4
arahy.Tifrunner.gnm1.ann1.52W323 Arachis hypogaea HOM05D003642 ORTHO05D004460 1.1e-22 112.1 146 39.0
Lj1A242T18 Lonicera japonica HOM05D003642 ORTHO05D004460 4.6e-21 106.7 336 26.8
PSO339G5820 Papaver somniferum HOM05D003642 ORTHO05D004460 1.9e-19 101.3 134 41.8
Pp3c6_3550 Physcomitrium patens HOM05D003642 ORTHO05D004460 2.2e-18 97.8 196 32.1
Pp3c15_12330 Physcomitrium patens HOM05D003642 ORTHO05D004460 1.8e-17 94.7 155 34.2
CDE06G0775 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 5.0e-15 86.7 93 47.3
Gohir.D08G015066 Gossypium hirsutum HOM05D003642 ORTHO05D004460 1.0e-12 79.0 93 43.0
Lj2C980T3 Lonicera japonica HOM05D003642 ORTHO05D004460 8.2e-10 69.3 342 23.1
CBR_g46720 Chara braunii HOM05D000953 ORTHO05D000231 1.4e-06 58.5 196 28.1
CAN.G225.12 Capsicum annuum HOM05D003642 ORTHO05D004460 3.2e-06 57.4 86 34.9
CBR_g39359 Chara braunii HOM05D000019 ORTHO05D000048 7.2e-06 56.2 257 28.0


User provided reference genes

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