Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0032s0018 Marchantia polymorpha HOM05D004910 ORTHO05D006864 0.0e+00 4118.9 2258 100.0
Pp3c7_26820 Physcomitrium patens HOM05D004910 ORTHO05D006864 0.0e+00 1778.1 2297 49.7
AagrBONN_evm.TU.Sc2ySwM_362.1947 Anthoceros agrestis HOM05D004910 ORTHO05D006864 0.0e+00 1770.0 1966 51.5
TAR629G2465 Trochodendron aralioides HOM05D004910 ORTHO05D006864 0.0e+00 1479.5 2299 42.2
Aqoxy3G02002 Aquilegia oxysepala HOM05D004910 ORTHO05D006864 0.0e+00 1401.7 2300 40.0
Thecc.05G234000 Theobroma cacao HOM05D004910 ORTHO05D006864 0.0e+00 1401.0 2295 41.7
CANSAT25G1237 Cannabis sativa HOM05D004910 ORTHO05D006864 0.0e+00 1382.9 2291 41.3
ATR0829G021 Amborella trichopoda HOM05D004910 ORTHO05D006864 0.0e+00 1377.1 2296 41.0
Manes.08G157000 Manihot esculenta HOM05D004910 ORTHO05D006864 0.0e+00 1374.4 2299 41.2
Cfa003693 Carpinus fangiana HOM05D004910 ORTHO05D006864 0.0e+00 1373.2 2301 41.1
Gorai.007G249800 Gossypium raimondii HOM05D004910 ORTHO05D006864 0.0e+00 1373.2 2308 41.7
Potri.013G071800 Populus trichocarpa HOM05D004910 ORTHO05D006864 0.0e+00 1369.4 2303 39.9
PSO782G5450 Papaver somniferum HOM05D004910 ORTHO05D006864 0.0e+00 1365.1 2298 40.3
FAN10G3403 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1363.2 2304 41.1
TWI34G0933 Tripterygium wilfordii HOM05D004910 ORTHO05D006864 0.0e+00 1359.0 2298 40.5
Prupe.2G105000 Prunus persica HOM05D004910 ORTHO05D006864 0.0e+00 1355.1 2311 40.9
Glyma.03G099800 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 1354.7 2288 40.0
Phvul.010G039700 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 1354.3 2304 39.7
Duzib177G0285 Durio zibethinus HOM05D004910 ORTHO05D006864 0.0e+00 1352.8 2303 40.6
FvH4_7g07740 Fragaria vesca HOM05D004910 ORTHO05D006864 0.0e+00 1349.0 2304 41.3
Eucgr.D01069 Eucalyptus grandis HOM05D004910 ORTHO05D006864 0.0e+00 1345.5 2304 40.3
FAN03G0816 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1345.5 2326 41.1
MD07G1080500 Malus domestica HOM05D004910 ORTHO05D006864 0.0e+00 1345.5 2296 41.0
MBI04_g30775_MAGBIO Magnolia biondii HOM05D004910 ORTHO05D006864 0.0e+00 1344.3 2342 38.5
MELO3C006215.2 Cucumis melo HOM05D004910 ORTHO05D006864 0.0e+00 1343.9 2290 40.0
CiPaw.02G046700 Carya illinoinensis HOM05D004910 ORTHO05D006864 0.0e+00 1338.9 2300 39.8
RcHm_v2.0_Chr1g0342311 Rosa chinensis HOM05D004910 ORTHO05D006864 0.0e+00 1337.0 2304 40.6
Cc08_g05600 Coffea canephora HOM05D004910 ORTHO05D006864 0.0e+00 1336.6 2306 39.6
FAN06G0636 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1336.6 2326 40.9
Sed0008127 Sechium edule HOM05D004910 ORTHO05D006864 0.0e+00 1334.3 2296 39.9
Glyma.07G122900 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 1332.0 2294 40.0
CsaV3_3G009930 Cucumis sativus L. HOM05D004910 ORTHO05D006864 0.0e+00 1328.2 2299 39.8
TPR.G17367 Trifolium pratense HOM05D004910 ORTHO05D006864 0.0e+00 1327.4 2296 39.7
Dinv43524 Davidia involucrata HOM05D004910 ORTHO05D006864 0.0e+00 1325.8 2062 41.1
Ca_25886_v3 Cicer arietinum L. HOM05D004910 ORTHO05D006864 0.0e+00 1325.5 2292 39.4
Rhsim07G0047300 Rhododendron simsii HOM05D004910 ORTHO05D006864 0.0e+00 1318.1 2132 40.0
Lj3g0022995 Lotus japonicus HOM05D004910 ORTHO05D006864 0.0e+00 1315.8 2291 39.4
arahy.Tifrunner.gnm1.ann1.7UUD9R Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 1313.1 2153 40.1
Medtr8g009780 Medicago truncatula HOM05D004910 ORTHO05D006864 0.0e+00 1301.6 2295 39.2
FAN01G0980 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1300.8 2402 39.8
Lsat_1_v5_gn_4_42261 Lactuca sativa HOM05D004910 ORTHO05D006864 0.0e+00 1293.5 2277 39.2
HanXRQChr15g0492621 Helianthus annuus HOM05D004910 ORTHO05D006864 0.0e+00 1292.7 2110 39.6
CAN.G992.20 Capsicum annuum HOM05D004910 ORTHO05D006864 0.0e+00 1291.9 2295 39.5
Nitab4.5_0006461g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 1286.9 2289 39.5
GSVIVG01019298001 Vitis vinifera HOM05D004910 ORTHO05D006864 0.0e+00 1285.8 2326 38.3
DCAR_029567 Daucus carota HOM05D004910 ORTHO05D006864 0.0e+00 1285.0 2303 38.4
Lalb_Chr07g0194851 Lupinus albus HOM05D004910 ORTHO05D006864 0.0e+00 1281.9 2315 38.7
Nitab4.5_0000792g0070 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 1275.4 2299 39.4
THA.LOC104805731 Tarenaya hassleriana HOM05D004910 ORTHO05D006864 0.0e+00 1265.0 2286 38.6
SalBow4G1969 Salvia bowleyana HOM05D004910 ORTHO05D006864 0.0e+00 1260.4 2297 38.7
ECA234G3354 Erigeron canadensis HOM05D004910 ORTHO05D006864 0.0e+00 1253.8 2262 38.9
Sopen01g032990 Solanum pennellii HOM05D004910 ORTHO05D006864 0.0e+00 1245.3 2289 39.0
Ciclev10030475m.g Citrus clementina HOM05D004910 ORTHO05D006864 0.0e+00 1238.4 2286 38.4
Zm00001eb025470 Zea mays HOM05D004910 ORTHO05D006864 0.0e+00 1211.1 2062 38.5
AL7G44770 Arabidopsis lyrata HOM05D004910 ORTHO05D006864 0.0e+00 1191.4 2295 37.9
Migut.N01670 Erythranthe guttata HOM05D004910 ORTHO05D006864 0.0e+00 1183.7 2299 37.3
vmacro13594 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 0.0e+00 1183.3 2193 36.1
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 0.0e+00 1169.8 2295 37.2
EL10Ac1g00665 Beta vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 1162.1 2401 36.2
ClCG05G002500 Citrullus lanatus HOM05D004910 ORTHO05D006864 0.0e+00 1152.1 2210 37.2
VMungo0331G1962 Vigna mungo HOM05D004910 ORTHO05D006864 0.0e+00 1113.6 2165 37.0
Aa31LG9G17970 Aethionema arabicum HOM05D004910 ORTHO05D006864 0.0e+00 1104.4 2375 35.6
CBR_g49462 Chara braunii HOM05D004910 ORTHO05D006864 0.0e+00 1088.9 2491 35.2
PGR083G1400 Punica granatum HOM05D004910 ORTHO05D006864 0.0e+00 1082.0 1589 42.7
Ah.05g177140 Amaranthus hybridus HOM05D004910 ORTHO05D006864 4.6e-311 1072.4 2248 36.0
CDE12G0362 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 2.6e-309 1066.6 1874 36.0
Haze_15792 Corylus avellana HOM05D004910 ORTHO05D006864 2.1e-306 1057.0 2081 38.4
Gohir.D11G236600 Gossypium hirsutum HOM05D004910 ORTHO05D006864 4.4e-301 1039.3 1985 39.5
Hund26917 Selenicereus undatus HOM05D004910 ORTHO05D006864 4.2e-299 1032.7 2209 35.5
Gohir.A11G225700 Gossypium hirsutum HOM05D004910 ORTHO05D006864 1.6e-295 1020.8 1983 38.4
Lj9A617T56 Lonicera japonica HOM05D004910 ORTHO05D006864 3.6e-295 1019.6 1962 36.7
SEGI_03249 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 3.8e-292 1009.6 1417 43.0
SGA_v2.0_scaffold4G02226 Striga asiatica HOM05D004910 ORTHO05D006864 6.4e-292 1008.8 2147 36.7
CSS0017393 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.3e-289 1001.1 2011 37.8
Solyc01g081430.4 Solanum lycopersicum HOM05D004910 ORTHO05D006864 8.2e-279 965.3 2073 36.2
Peaxi162Scf00907g00121 Petunia axillaris HOM05D004910 ORTHO05D006864 7.6e-277 958.7 2133 35.7
SMO347G0286 Selaginella moellendorffii HOM05D004910 ORTHO05D006864 3.2e-275 953.4 1520 39.6
Atru.chr2.1651 Acer truncatum HOM05D004910 ORTHO05D006864 7.7e-269 932.2 1161 46.6
QL04p053216 Quercus lobata HOM05D004910 ORTHO05D006864 4.2e-251 873.2 1794 36.7
AUR62038026 Chenopodium quinoa HOM05D004910 ORTHO05D006864 5.7e-240 836.3 1852 34.9
PSO063G2935 Papaver somniferum HOM05D004910 ORTHO05D006864 1.5e-232 811.6 975 47.7
Sc26g0002020 Simmondsia chinensis HOM05D004910 ORTHO05D006864 8.0e-226 789.3 1806 36.4
CARHR216720 Cardamine hirsuta HOM05D004910 ORTHO05D006864 2.5e-219 767.7 1795 34.7
Os04g0218600 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 6.8e-217 759.6 980 44.8
Oeu002050.1 Olea europaea HOM05D004910 ORTHO05D006864 1.6e-205 721.8 1782 34.1
AUR62014509 Chenopodium quinoa HOM05D004910 ORTHO05D006864 4.7e-202 710.3 1800 33.9
arahy.Tifrunner.gnm1.ann1.X9S6DI Arachis hypogaea HOM05D004910 ORTHO05D006864 4.5e-184 650.6 1663 32.6
unitig_578.g16705 Utricularia gibba HOM05D004910 ORTHO05D006864 2.9e-159 568.2 649 49.9
Psat4g216280 Pisum sativum HOM05D004910 ORTHO05D006864 3.6e-157 561.2 1373 31.8
QL04p053202 Quercus lobata HOM05D004910 ORTHO05D006864 6.7e-156 557.0 522 56.1
Cpa.g.sc73.58 Carica papaya HOM05D004910 ORTHO05D006864 7.4e-155 553.5 1066 36.6
Psat4g215960 Pisum sativum HOM05D004910 ORTHO05D006864 3.2e-150 538.1 519 53.9
arahy.Tifrunner.gnm1.ann1.L1X5S4 Arachis hypogaea HOM05D004910 ORTHO05D006864 1.6e-133 482.6 1226 32.8
PSO063G6831 Papaver somniferum HOM05D004910 ORTHO05D006864 1.8e-129 469.2 1206 34.6
Atru.chr2.1650 Acer truncatum HOM05D004910 ORTHO05D006864 3.1e-121 441.8 1104 35.1
Hma1.2p1_0353F.1_g133240 Hydrangea macrophylla HOM05D004910 ORTHO05D006864 9.8e-115 420.2 427 53.2
Actinidia21201 Actinidia chinensis HOM05D004910 ORTHO05D006864 2.0e-107 396.0 647 39.1
arahy.Tifrunner.gnm1.ann1.2JI1W5 Arachis hypogaea HOM05D004910 ORTHO05D006864 2.7e-104 385.6 392 52.6
AUR62014510 Chenopodium quinoa HOM05D004910 ORTHO05D006864 2.2e-82 312.8 423 44.2
AUR62038025 Chenopodium quinoa HOM05D004910 ORTHO05D006864 6.4e-82 311.2 421 44.9
CSS0010640 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.4e-81 310.1 352 51.4
Cpa.g.sc73.62 Carica papaya HOM05D004910 ORTHO05D006864 4.6e-80 305.1 216 65.7
AagrBONN_evm.TU.Sc2ySwM_117.2552 Anthoceros agrestis HOM05D004910 ORTHO05D006864 1.1e-76 293.9 289 56.7
Solyc01g081420.3 Solanum lycopersicum HOM05D004910 ORTHO05D006864 7.6e-75 287.7 216 63.4
Peaxi162Scf00907g00123 Petunia axillaris HOM05D004910 ORTHO05D006864 9.9e-75 287.3 227 62.1
Prupe.2G100700 Prunus persica HOM05D004910 ORTHO05D006864 9.9e-75 287.3 364 47.3
Haze_15794 Corylus avellana HOM05D004910 ORTHO05D006864 2.6e-67 262.7 182 66.5
VMungo0331G1288 Vigna mungo HOM05D004910 ORTHO05D010195 1.2e-48 200.7 134 70.1
PGR083G0666 Punica granatum HOM05D004910 ORTHO05D006864 3.5e-48 199.1 592 37.3
Actinidia31737 Actinidia chinensis HOM05D004910 ORTHO05D006864 6.0e-48 198.4 581 29.3
Actinidia21200 Actinidia chinensis HOM05D004910 ORTHO05D006864 9.7e-38 164.5 349 35.8
Cpa.g.sc73.59 Carica papaya HOM05D004910 ORTHO05D006864 3.7e-37 162.5 276 39.9
Gohir.A11G225602 Gossypium hirsutum HOM05D004910 ORTHO05D006864 1.9e-33 150.2 146 49.3
SEGI_03241 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 1.4e-25 124.0 89 65.2
CSS0036242 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 3.2e-25 122.9 120 49.2
CSS0010022 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 4.2e-25 122.5 120 49.2
CSS0002002 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 5.5e-25 122.1 73 72.6
CSS0008041 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 5.5e-25 122.1 73 72.6
CSS0011325 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 7.4e-22 111.7 144 47.2
CDE12G0963 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 9.1e-20 104.8 403 35.0
Actinidia21203 Actinidia chinensis HOM05D004910 ORTHO05D006864 1.0e-18 101.3 64 68.8
RcHm_v2.0_Chr4g0408121 Rosa chinensis HOM05D004910 ORTHO05D006864 6.1e-16 92.0 85 51.8
Psat6g100000 Pisum sativum HOM05D004910 ORTHO05D030483 2.3e-15 90.1 235 29.8
CSS0032650 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 8.8e-15 88.2 55 70.9
Nitab4.5_0011076g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 8.8e-15 88.2 73 60.3
ClCG00G006380 Citrullus lanatus HOM05D004910 ORTHO05D006864 9.7e-14 84.7 53 75.5
RcHm_v2.0_Chr4g0407941 Rosa chinensis HOM05D004910 ORTHO05D019205 2.8e-13 83.2 65 56.9
Dinv00622 Davidia involucrata HOM05D004910 ORTHO05D006864 1.4e-12 80.9 56 64.3
Phvul.010G039400 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 1.2e-08 67.8 61 59.0
Gohir.D06G038650 Gossypium hirsutum HOM05D004910 ORTHO05D030909 8.0e-08 65.1 55 52.7
Psat4g216320 Pisum sativum HOM05D004910 ORTHO05D006864 1.2e-06 61.2 331 34.1


User provided reference genes

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