Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 7.0e-245 850.1 414 100.0
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 1.8e-67 260.8 231 55.4
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 9.4e-32 142.1 404 29.0
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 2.7e-31 140.6 346 29.2
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 3.6e-31 140.2 320 31.6
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 6.1e-31 139.4 322 28.9
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 1.8e-30 137.9 354 28.0
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 8.8e-30 135.6 343 29.2
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 1.2e-29 135.2 322 29.8
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 1.2e-29 135.2 423 30.0
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.6e-29 134.0 340 29.4
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 4.4e-29 133.3 334 29.0
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 5.7e-29 132.9 340 29.4
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 5.7e-29 132.9 340 29.4
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 7.5e-29 132.5 339 28.6
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 9.8e-29 132.1 342 29.2
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 9.8e-29 132.1 357 28.3
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 9.8e-29 132.1 337 28.2
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 1.3e-28 131.7 336 27.7
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 1.7e-28 131.3 329 29.8
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 2.2e-28 131.0 353 29.2
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 2.2e-28 131.0 359 28.4
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 2.8e-28 130.6 339 28.6
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 2.8e-28 130.6 339 28.9
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 2.8e-28 130.6 342 28.4
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 6.3e-28 129.4 311 29.6
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 6.3e-28 129.4 343 29.2
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 6.3e-28 129.4 312 30.8
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 8.3e-28 129.0 344 28.2
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 1.1e-27 128.6 335 27.5
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 1.1e-27 128.6 342 27.2
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 1.1e-27 128.6 302 28.5
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 1.1e-27 128.6 335 29.6
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 1.1e-27 128.6 341 28.7
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 1.4e-27 128.3 339 27.7
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 1.4e-27 128.3 322 30.1
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 1.8e-27 127.9 334 27.2
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 1.8e-27 127.9 340 28.8
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 1.8e-27 127.9 327 28.1
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 2.4e-27 127.5 343 29.2
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 3.1e-27 127.1 342 27.2
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 3.1e-27 127.1 373 28.2
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 3.1e-27 127.1 333 27.3
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 3.1e-27 127.1 324 29.6
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 4.1e-27 126.7 333 28.2
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 7.0e-27 125.9 347 27.7
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 7.0e-27 125.9 373 27.1
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 7.0e-27 125.9 403 26.1
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 9.1e-27 125.6 320 29.7
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 9.1e-27 125.6 313 29.7
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 1.6e-26 124.8 329 26.7
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 1.6e-26 124.8 329 27.4
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 1.6e-26 124.8 333 28.8
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 2.0e-26 124.4 321 26.8
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 2.0e-26 124.4 330 27.3
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 2.7e-26 124.0 342 27.5
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 3.5e-26 123.6 311 27.7
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 3.5e-26 123.6 356 27.2
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 4.5e-26 123.2 319 27.6
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 5.9e-26 122.9 356 26.7
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 5.9e-26 122.9 339 27.7
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 7.7e-26 122.5 364 27.5
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 1.0e-25 122.1 344 25.3
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 1.0e-25 122.1 328 28.0
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 1.3e-25 121.7 334 27.8
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 1.3e-25 121.7 360 26.7
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 1.3e-25 121.7 343 27.1
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 1.7e-25 121.3 341 27.9
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 1.7e-25 121.3 360 26.4
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 1.7e-25 121.3 319 27.6
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 1.7e-25 121.3 324 27.8
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 2.3e-25 120.9 333 27.6
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 2.9e-25 120.6 399 26.3
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 2.9e-25 120.6 391 26.3
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 2.9e-25 120.6 333 27.6
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 2.9e-25 120.6 322 27.6
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 3.8e-25 120.2 312 28.8
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 5.0e-25 119.8 317 29.7
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 5.0e-25 119.8 338 26.9
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 6.5e-25 119.4 361 26.9
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 8.6e-25 119.0 368 27.2
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 8.6e-25 119.0 320 28.4
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 8.6e-25 119.0 312 27.2
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 8.6e-25 119.0 328 27.4
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 1.1e-24 118.6 311 28.3
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 1.5e-24 118.2 310 28.4
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 1.5e-24 118.2 332 27.1
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 1.9e-24 117.9 333 27.3
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 1.9e-24 117.9 320 27.8
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 2.5e-24 117.5 324 30.6
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 2.5e-24 117.5 333 27.3
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 2.5e-24 117.5 396 26.0
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 2.5e-24 117.5 343 27.1
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 2.5e-24 117.5 329 26.7
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 2.5e-24 117.5 370 25.7
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 2.5e-24 117.5 337 26.7
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 3.2e-24 117.1 348 25.9
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 4.2e-24 116.7 386 26.4
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 4.2e-24 116.7 357 26.3
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 4.2e-24 116.7 400 26.5
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 5.5e-24 116.3 331 26.3
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 7.2e-24 115.9 400 26.8
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 7.2e-24 115.9 400 27.0
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 7.2e-24 115.9 400 26.8
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 7.2e-24 115.9 400 27.0
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 7.2e-24 115.9 382 26.4
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 9.5e-24 115.5 333 27.9
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 9.5e-24 115.5 310 28.1
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 1.2e-23 115.2 400 26.8
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 1.6e-23 114.8 319 26.6
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 1.6e-23 114.8 340 27.4
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.6e-23 114.8 340 26.2
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 2.1e-23 114.4 311 29.3
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 2.1e-23 114.4 356 24.4
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 3.6e-23 113.6 306 27.8
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 3.6e-23 113.6 338 26.0
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 4.7e-23 113.2 312 28.2
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 4.7e-23 113.2 321 28.3
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 4.7e-23 113.2 309 27.8
Cre01.g008891 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D031137 6.1e-23 112.8 254 29.9
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 6.1e-23 112.8 310 28.7
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 6.1e-23 112.8 365 26.0
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 1.0e-22 112.1 403 24.8
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 1.0e-22 112.1 310 28.7
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 2.3e-22 110.9 336 27.7
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 6.8e-22 109.4 348 25.3
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 1.5e-21 108.2 320 27.2
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 3.4e-21 107.1 326 27.0
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 2.2e-20 104.4 310 26.8
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 2.8e-20 104.0 323 25.1
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 1.1e-19 102.1 335 27.5
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 1.4e-19 101.7 314 27.4
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 2.4e-19 100.9 311 25.4
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 2.7e-18 97.4 329 26.1
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 3.5e-18 97.1 319 26.6
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 5.9e-18 96.3 333 24.0
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 2.9e-17 94.0 299 25.8
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 3.8e-17 93.6 267 28.5
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 6.6e-17 92.8 345 24.6
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 1.9e-16 91.3 248 25.8
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 3.6e-15 87.0 250 26.4
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 4.7e-15 86.7 134 35.1
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 1.4e-14 85.1 325 25.8
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 1.4e-14 85.1 279 26.2
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 6.8e-14 82.8 264 25.8
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.5e-13 81.6 202 31.2
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 9.8e-13 79.0 152 29.6
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.3e-12 78.6 232 28.0
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 3.7e-12 77.0 237 25.7
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 2.4e-11 74.3 155 29.0
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 7.0e-11 72.8 201 29.4
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 2.0e-10 71.2 141 30.5
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 2.3e-09 67.8 230 26.1
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 3.9e-09 67.0 161 26.7


User provided reference genes

Program Settings