Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0032s0010 Marchantia polymorpha HOM05D002567 ORTHO05D006538 0.0e+00 3754.1 2056 100.0
Mapoly0004s0277 Marchantia polymorpha HOM05D002567 ORTHO05D006538 8.5e-174 616.3 324 97.2
Mapoly0030s0133 Marchantia polymorpha HOM05D002567 ORTHO05D006538 3.3e-154 551.2 289 96.5
Pp3c7_5840 Physcomitrium patens HOM05D002567 ORTHO05D006538 2.9e-65 255.8 1057 28.4
Mapoly0055s0074 Marchantia polymorpha HOM05D002567 ORTHO05D006538 3.3e-61 242.3 127 94.5
MD03G1284300 Malus domestica HOM05D002567 ORTHO05D006538 1.9e-48 199.9 529 32.1
Lj2C1188T12 Lonicera japonica HOM05D002567 ORTHO05D006538 2.5e-48 199.5 479 34.4
Dinv19733 Davidia involucrata HOM05D002567 ORTHO05D006538 2.1e-47 196.4 497 33.4
Prupe.8G255600 Prunus persica HOM05D002567 ORTHO05D006538 4.7e-47 195.3 534 32.6
Nn3g21405 Nelumbo nucifera HOM05D002567 ORTHO05D006538 1.0e-46 194.1 527 33.0
Cc01_g20510 Coffea canephora HOM05D002567 ORTHO05D006538 2.3e-46 193.0 514 32.3
Thecc.01G293900 Theobroma cacao HOM05D002567 ORTHO05D006538 6.7e-46 191.4 496 34.1
MD11G1302000 Malus domestica HOM05D002567 ORTHO05D006538 1.1e-45 190.7 1132 24.7
Nn5g30059 Nelumbo nucifera HOM05D002567 ORTHO05D006538 1.5e-45 190.3 300 40.7
PGR119G0460 Punica granatum HOM05D002567 ORTHO05D006538 1.5e-45 190.3 517 32.9
CiPaw.07G103600 Carya illinoinensis HOM05D002567 ORTHO05D006538 2.6e-45 189.5 522 32.8
COL.COLO4_07998 Corchorus olitorius HOM05D002567 ORTHO05D006538 2.6e-45 189.5 496 33.1
Dinv33021 Davidia involucrata HOM05D002567 ORTHO05D006538 3.3e-45 189.1 485 34.0
QL12p030584 Quercus lobata HOM05D002567 ORTHO05D006538 3.3e-45 189.1 536 34.3
Cpa.g.sc9.189 Carica papaya HOM05D002567 ORTHO05D006538 5.7e-45 188.3 542 31.9
Atru.chr5.1232 Acer truncatum HOM05D002567 ORTHO05D006538 7.4e-45 188.0 558 32.3
EL10Ac7g17517 Beta vulgaris HOM05D002567 ORTHO05D006538 2.2e-44 186.4 495 32.9
TAR633G1653 Trochodendron aralioides HOM05D002567 ORTHO05D006538 2.2e-44 186.4 331 39.3
RcHm_v2.0_Chr6g0293161 Rosa chinensis HOM05D002567 ORTHO05D006538 1.1e-43 184.1 588 30.6
Nitab4.5_0001697g0140 Nicotiana tabacum HOM05D002567 ORTHO05D006538 1.4e-43 183.7 528 32.0
CANSAT25G2282 Cannabis sativa HOM05D002567 ORTHO05D006538 1.8e-43 183.3 521 30.9
Gorai.004G088100 Gossypium raimondii HOM05D002567 ORTHO05D006538 3.1e-43 182.6 490 33.3
Lalb_Chr15g0078671 Lupinus albus HOM05D002567 ORTHO05D006538 3.1e-43 182.6 300 40.3
MBI19_g12821_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 3.1e-43 182.6 426 34.3
Duzib138G0932 Durio zibethinus HOM05D002567 ORTHO05D006538 4.1e-43 182.2 545 31.2
Oeu046708.2 Olea europaea HOM05D002567 ORTHO05D006538 4.1e-43 182.2 534 32.2
TAR362G0158 Trochodendron aralioides HOM05D002567 ORTHO05D006538 4.1e-43 182.2 538 32.3
Lalb_Chr18g0047271 Lupinus albus HOM05D002567 ORTHO05D006538 9.1e-43 181.0 600 31.7
TWI14G0289 Tripterygium wilfordii HOM05D002567 ORTHO05D006538 9.1e-43 181.0 552 31.0
Gohir.A08G074400 Gossypium hirsutum HOM05D002567 ORTHO05D006538 2.6e-42 179.5 490 32.9
Gohir.D08G083700 Gossypium hirsutum HOM05D002567 ORTHO05D006538 2.6e-42 179.5 490 33.1
Lj1g0027200 Lotus japonicus HOM05D002567 ORTHO05D006538 3.5e-42 179.1 524 32.6
GSVIVG01010967001 Vitis vinifera HOM05D002567 ORTHO05D006538 4.5e-42 178.7 546 32.6
AL6G50490 Arabidopsis lyrata HOM05D002567 ORTHO05D006538 1.0e-41 177.6 562 31.7
ECA236G0908 Erigeron canadensis HOM05D002567 ORTHO05D006538 1.3e-41 177.2 1061 25.4
CAN.G1562.7 Capsicum annuum HOM05D002567 ORTHO05D006538 1.7e-41 176.8 547 31.8
HanXRQChr04g0118111 Helianthus annuus HOM05D002567 ORTHO05D006538 1.7e-41 176.8 524 31.9
AT4G02560 Arabidopsis thaliana HOM05D002567 ORTHO05D006538 2.2e-41 176.4 503 32.2
Sopen09g029570 Solanum pennellii HOM05D002567 ORTHO05D006538 2.2e-41 176.4 508 33.3
CARHR250850 Cardamine hirsuta HOM05D002567 ORTHO05D006538 2.9e-41 176.0 541 30.9
FvH4_2g25100 Fragaria vesca HOM05D002567 ORTHO05D006538 3.8e-41 175.6 595 29.6
HPP92_025217 Vanilla planifolia HOM05D002567 ORTHO05D006538 1.1e-40 174.1 552 31.3
Lsat_1_v5_gn_8_54500 Lactuca sativa HOM05D002567 ORTHO05D006538 1.5e-40 173.7 479 29.9
Sc17g0003440 Simmondsia chinensis HOM05D002567 ORTHO05D006538 1.9e-40 173.3 536 31.2
Glyma.03G211500 Glycine max HOM05D002567 ORTHO05D006538 2.5e-40 172.9 510 31.6
AUR62033197 Chenopodium quinoa HOM05D002567 ORTHO05D006538 3.2e-40 172.6 543 30.4
Sp6g02470 Schrenkiella parvula HOM05D002567 ORTHO05D006538 5.5e-40 171.8 535 31.2
TWI59G0117 Tripterygium wilfordii HOM05D002567 ORTHO05D006538 5.5e-40 171.8 498 32.9
DCAR_018344 Daucus carota HOM05D002567 ORTHO05D006538 9.4e-40 171.0 556 29.9
Glyma.19G208700 Glycine max HOM05D002567 ORTHO05D006538 1.2e-39 170.6 488 32.0
Carub.0006s3458 Capsella rubella HOM05D002567 ORTHO05D006538 1.6e-39 170.2 535 30.1
Sopen09g029590 Solanum pennellii HOM05D002567 ORTHO05D006538 2.1e-39 169.9 483 32.1
BcaB05g23644 Brassica carinata HOM05D002567 ORTHO05D006538 2.7e-39 169.5 541 31.2
Migut.D00183 Erythranthe guttata HOM05D002567 ORTHO05D006538 3.6e-39 169.1 513 31.2
Hund18109 Selenicereus undatus HOM05D002567 ORTHO05D006538 3.6e-39 169.1 280 40.4
CDE11G0231 Ceratophyllum demersum HOM05D002567 ORTHO05D006538 6.1e-39 168.3 503 30.6
Aqoxy5G00702 Aquilegia oxysepala HOM05D002567 ORTHO05D006538 8.0e-39 167.9 574 29.8
FAN24G0094 Fragaria x ananassa HOM05D002567 ORTHO05D006538 8.0e-39 167.9 592 29.4
CsaV3_7G028930 Cucumis sativus L. HOM05D002567 ORTHO05D006538 3.0e-38 166.0 544 30.3
MBI19_g13122_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 8.8e-38 164.5 368 34.8
THA.LOC104815934 Tarenaya hassleriana HOM05D002567 ORTHO05D006538 1.2e-37 164.1 529 30.4
Ciclev10018617m.g Citrus clementina HOM05D002567 ORTHO05D006538 1.5e-37 163.7 519 30.6
PSO832G4557 Papaver somniferum HOM05D002567 ORTHO05D006538 1.5e-37 163.7 565 28.3
BcaC03g16147 Brassica carinata HOM05D002567 ORTHO05D006538 2.0e-37 163.3 557 29.1
Medtr7g108390 Medicago truncatula HOM05D002567 ORTHO05D006538 2.0e-37 163.3 518 31.5
Solyc09g074690.3 Solanum lycopersicum HOM05D002567 ORTHO05D006538 2.6e-37 162.9 274 40.1
SGA_v2.0_scaffold2G01415 Striga asiatica HOM05D001550 ORTHO05D006538 4.4e-37 162.2 547 32.7
ClCG09G006200 Citrullus lanatus HOM05D002567 ORTHO05D006538 7.5e-37 161.4 548 29.0
MELO3C016045.2 Cucumis melo HOM05D002567 ORTHO05D006538 7.5e-37 161.4 545 30.6
VMungo1383G1965 Vigna mungo HOM05D002567 ORTHO05D006538 7.5e-37 161.4 522 30.5
Sed0021907 Sechium edule HOM05D002567 ORTHO05D006538 2.2e-36 159.8 568 28.3
A02p24870 Brassica napus HOM05D002567 ORTHO05D006538 2.8e-36 159.5 565 28.5
BraA02t07474Z Brassica rapa HOM05D002567 ORTHO05D006538 2.8e-36 159.5 565 28.5
Thhalv10028403m.g Eutrema salsugineum HOM05D002567 ORTHO05D006538 2.8e-36 159.5 518 29.9
Phvul.001G204600 Phaseolus vulgaris HOM05D002567 ORTHO05D006538 4.8e-36 158.7 521 29.8
C02p39290 Brassica napus HOM05D002567 ORTHO05D006538 6.3e-36 158.3 560 28.8
BolC2t09940H Brassica oleracea HOM05D002567 ORTHO05D006538 6.3e-36 158.3 560 28.8
PSO210G0804 Papaver somniferum HOM05D002567 ORTHO05D006538 8.2e-36 157.9 565 27.8
Peaxi162Scf00067g01812 Petunia axillaris HOM05D002567 ORTHO05D006538 1.4e-35 157.1 347 36.0
Haze_04858 Corylus avellana HOM05D002567 ORTHO05D006538 5.3e-35 155.2 605 28.9
Potri.002G209216 Populus trichocarpa HOM05D002567 ORTHO05D006538 5.3e-35 155.2 587 29.1
Ca_09134_v3 Cicer arietinum L. HOM05D002567 ORTHO05D006538 5.9e-34 151.8 323 34.1
ATR0706G272 Amborella trichopoda HOM05D002567 ORTHO05D006538 1.0e-33 151.0 558 30.6
AUR62043270 Chenopodium quinoa HOM05D002567 ORTHO05D006538 1.0e-33 151.0 574 28.9
Sabra02G0150900 Salix brachista HOM05D002567 ORTHO05D006538 1.3e-33 150.6 585 28.7
TPR.G9283 Trifolium pratense HOM05D002567 ORTHO05D006538 1.7e-33 150.2 564 30.0
CBR_g48346 Chara braunii HOM05D002567 ORTHO05D006538 3.8e-33 149.1 386 32.6
Os01g0934300 Oryza sativa ssp. japonica HOM05D002567 ORTHO05D006538 5.0e-33 148.7 325 33.2
SMO119G0396 Selaginella moellendorffii HOM05D002567 ORTHO05D006538 1.1e-32 147.5 192 43.8
Solyc09g074730.3 Solanum lycopersicum HOM05D002567 ORTHO05D006538 1.1e-32 147.5 489 30.1
Aa31LG5G2190 Aethionema arabicum HOM05D002567 ORTHO05D006538 4.2e-32 145.6 618 27.8
FAN20G1419 Fragaria x ananassa HOM05D002567 ORTHO05D006538 1.2e-31 144.1 597 28.5
arahy.Tifrunner.gnm1.ann1.8D3299 Arachis hypogaea HOM05D002567 ORTHO05D006538 1.6e-31 143.7 276 36.2
arahy.Tifrunner.gnm1.ann1.B3NEVG Arachis hypogaea HOM05D002567 ORTHO05D006538 1.6e-31 143.7 276 36.2
Potri.014G132800 Populus trichocarpa HOM05D002567 ORTHO05D006538 6.1e-31 141.7 589 27.2
SHI15302 Sapria himalayana HOM05D002567 ORTHO05D006538 1.0e-30 141.0 565 27.8
Psat3g022840 Pisum sativum HOM05D002567 ORTHO05D006538 3.0e-30 139.4 445 32.1
CDE05G3083 Ceratophyllum demersum HOM05D002567 ORTHO05D006538 5.2e-30 138.7 495 28.7
Zm00001eb142180 Zea mays HOM05D002567 ORTHO05D006538 4.4e-29 135.6 633 25.1
FAN15G0803 Fragaria x ananassa HOM05D002567 ORTHO05D006538 3.1e-27 129.4 582 26.6
FAN27G3038 Fragaria x ananassa HOM05D002567 ORTHO05D006538 7.0e-27 128.3 574 27.7
Actinidia28538 Actinidia chinensis HOM05D002567 ORTHO05D006538 9.5e-24 117.9 295 32.5
vmacro02487 Vaccinium macrocarpon HOM05D002567 ORTHO05D006538 1.6e-23 117.1 553 26.8
arahy.Tifrunner.gnm1.ann1.VDB3CB Arachis hypogaea HOM05D001550 ORTHO05D001611 2.3e-22 113.2 274 33.6
Oeu011428.1 Olea europaea HOM05D002567 ORTHO05D006538 4.4e-21 109.0 123 49.6
Eucgr.H01191 Eucalyptus grandis HOM05D002567 ORTHO05D006538 9.8e-21 107.8 363 31.1
Nitab4.5_0001447g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 5.4e-19 102.1 251 32.3
Rhsim13G0015100 Rhododendron simsii HOM05D002567 ORTHO05D006538 7.0e-19 101.7 594 26.1
Eucgr.H01192 Eucalyptus grandis HOM05D002567 ORTHO05D006538 2.1e-15 90.1 125 43.2
Actinidia28539 Actinidia chinensis HOM05D002567 ORTHO05D006538 3.4e-13 82.8 238 29.8
unitig_26.g10168 Utricularia gibba HOM05D002567 ORTHO05D006538 1.3e-12 80.9 213 31.5
CBR_g48344 Chara braunii HOM05D002567 ORTHO05D006538 8.3e-12 78.2 402 25.6
Manes.05G065900 Manihot esculenta HOM05D002567 ORTHO05D006538 1.4e-11 77.4 264 28.0
Sabra14G0099200 Salix brachista HOM05D002567 ORTHO05D006538 2.4e-11 76.6 624 23.1
Actinidia32249 Actinidia chinensis HOM05D002567 ORTHO05D006538 2.7e-10 73.2 117 39.3
Lj2A1188T56 Lonicera japonica HOM05D002567 ORTHO05D006538 2.3e-09 70.1 199 31.7
CARHR020360 Cardamine hirsuta HOM05D002848 ORTHO05D003043 8.6e-09 68.2 207 30.4
Lalb_Chr18g0047261 Lupinus albus HOM05D002567 ORTHO05D006538 1.1e-08 67.8 231 27.3
PSO675G8906 Papaver somniferum HOM05D002848 ORTHO05D003043 1.1e-08 67.8 223 30.5
TAR399G0002 Trochodendron aralioides HOM05D002567 ORTHO05D006538 4.3e-08 65.9 69 47.8
Actinidia00673 Actinidia chinensis HOM05D002567 ORTHO05D006538 5.6e-08 65.5 101 37.6
BolC8t49614H Brassica oleracea HOM05D002848 ORTHO05D003043 7.3e-08 65.1 301 27.9
TAR625G0420 Trochodendron aralioides HOM05D002848 ORTHO05D003043 7.3e-08 65.1 206 30.1
AT1G19860 Arabidopsis thaliana HOM05D002848 ORTHO05D003043 9.5e-08 64.7 192 29.7
PSO541G4561 Papaver somniferum HOM05D002848 ORTHO05D003043 9.5e-08 64.7 223 30.0
BcaC07g39005 Brassica carinata HOM05D002848 ORTHO05D003043 1.2e-07 64.3 301 27.9
C08p19770 Brassica napus HOM05D002848 ORTHO05D003043 1.2e-07 64.3 301 27.9
TWI53G0820 Tripterygium wilfordii HOM05D002848 ORTHO05D003043 1.6e-07 63.9 154 35.7
BcaB07g32004 Brassica carinata HOM05D002848 ORTHO05D003043 2.1e-07 63.5 219 29.2
BcaC05g25878 Brassica carinata HOM05D002848 ORTHO05D003043 2.1e-07 63.5 183 29.0
A08p29640 Brassica napus HOM05D002848 ORTHO05D003043 2.1e-07 63.5 301 27.2
BolC5t30542H Brassica oleracea HOM05D002848 ORTHO05D003043 2.1e-07 63.5 183 29.0
Carub.0001s1938 Capsella rubella HOM05D002848 ORTHO05D003043 2.1e-07 63.5 225 28.0
C05p18320 Brassica napus HOM05D002848 ORTHO05D003043 2.8e-07 63.2 183 29.0
HanXRQChr12g0367651 Helianthus annuus HOM05D002848 ORTHO05D003043 2.8e-07 63.2 221 28.1
Oeu007349.2 Olea europaea HOM05D002848 ORTHO05D003043 2.8e-07 63.2 192 30.2
EL10Ac1g02255 Beta vulgaris HOM05D002848 ORTHO05D003043 3.6e-07 62.8 211 30.3
Gohir.D06G001300 Gossypium hirsutum HOM05D002848 ORTHO05D003043 3.6e-07 62.8 220 30.9
Gorai.010G005700 Gossypium raimondii HOM05D002848 ORTHO05D003043 3.6e-07 62.8 220 30.9
TAR381G0737 Trochodendron aralioides HOM05D002848 ORTHO05D003043 3.6e-07 62.8 202 30.2
Phvul.002G110100 Phaseolus vulgaris HOM05D002848 ORTHO05D003043 4.7e-07 62.4 98 38.8
Thecc.08G040800 Theobroma cacao HOM05D002848 ORTHO05D003043 4.7e-07 62.4 200 30.0
ECA233G1527 Erigeron canadensis HOM05D002848 ORTHO05D003043 6.2e-07 62.0 67 47.8
Solyc09g074710.2 Solanum lycopersicum HOM05D002567 ORTHO05D006538 6.2e-07 62.0 233 27.5
CiPaw.08G132900 Carya illinoinensis HOM05D002848 ORTHO05D003043 8.0e-07 61.6 240 28.3
AL1G32590 Arabidopsis lyrata HOM05D002848 ORTHO05D003043 1.8e-06 60.5 196 29.1
MD02G1134000 Malus domestica HOM05D002848 ORTHO05D003043 1.8e-06 60.5 247 25.5
Nn6g32298 Nelumbo nucifera HOM05D002848 ORTHO05D003043 1.8e-06 60.5 204 27.9
Solyc12g089260.3 Solanum lycopersicum HOM05D002848 ORTHO05D003043 1.8e-06 60.5 247 27.5
BcaB03g12895 Brassica carinata HOM05D002848 ORTHO05D003043 2.3e-06 60.1 298 28.2
Mapoly0111s0041 Marchantia polymorpha HOM05D002848 ORTHO05D003043 2.3e-06 60.1 87 41.4
Sopen12g031140 Solanum pennellii HOM05D002848 ORTHO05D003043 2.3e-06 60.1 209 29.2
Sc02g0008430 Simmondsia chinensis HOM05D002848 ORTHO05D003043 3.1e-06 59.7 206 30.1
BraA08t34900Z Brassica rapa HOM05D002848 ORTHO05D003043 4.0e-06 59.3 302 26.8
CiPaw.08G064200 Carya illinoinensis HOM05D002848 ORTHO05D003043 4.0e-06 59.3 231 30.7
Lsat_1_v5_gn_8_31441 Lactuca sativa HOM05D002848 ORTHO05D003043 4.0e-06 59.3 228 25.0
MBI02_g41934_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 4.0e-06 59.3 59 52.5
Nitab4.5_0000192g0040 Nicotiana tabacum HOM05D002848 ORTHO05D003043 4.0e-06 59.3 227 26.4
Sed0009314 Sechium edule HOM05D002848 ORTHO05D003043 4.0e-06 59.3 224 29.0
PGSC0003DMG400029424 Solanum tuberosum HOM05D002848 ORTHO05D003043 4.0e-06 59.3 233 27.0
CARHR160770 Cardamine hirsuta HOM05D002848 ORTHO05D003043 5.2e-06 58.9 138 31.9
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 5.2e-06 58.9 207 29.0
CAN.G1671.1 Capsicum annuum HOM05D002848 ORTHO05D003043 6.8e-06 58.5 109 35.8
CAN.G847.13 Capsicum annuum HOM05D002848 ORTHO05D003043 6.8e-06 58.5 208 27.9
Hund24098 Selenicereus undatus HOM05D002848 ORTHO05D003043 6.8e-06 58.5 197 27.9
VMungo0251G2011 Vigna mungo HOM05D002848 ORTHO05D003043 6.8e-06 58.5 69 44.9
Ah.00g000070 Amaranthus hybridus HOM05D002848 ORTHO05D003043 8.9e-06 58.2 216 31.0
A06p16060 Brassica napus HOM05D002848 ORTHO05D003043 8.9e-06 58.2 195 28.2
BraA06t24712Z Brassica rapa HOM05D002848 ORTHO05D003043 8.9e-06 58.2 195 28.2
Lj2g0018127 Lotus japonicus HOM05D002848 ORTHO05D003043 8.9e-06 58.2 220 28.2
Nitab4.5_0000577g0100 Nicotiana tabacum HOM05D002848 ORTHO05D003043 8.9e-06 58.2 218 28.9


User provided reference genes

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