Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0032s0004 Marchantia polymorpha HOM05D004652 ORTHO05D005634 1.5e-192 676.0 340 100.0
SMO367G0761 Selaginella moellendorffii HOM05D004652 ORTHO05D005634 4.9e-111 405.2 310 64.8
Pp3c4_13980 Physcomitrium patens HOM05D004652 ORTHO05D005634 6.0e-109 398.3 320 62.8
Dinv30009 Davidia involucrata HOM05D004652 ORTHO05D005634 2.6e-104 382.9 310 57.7
Nn5g30355 Nelumbo nucifera HOM05D004652 ORTHO05D005634 2.6e-104 382.9 311 57.9
Pp3c13_18360 Physcomitrium patens HOM05D004652 ORTHO05D005634 3.4e-104 382.5 311 60.5
ATR0724G029 Amborella trichopoda HOM05D004652 ORTHO05D005634 5.8e-104 381.7 332 56.6
AagrBONN_evm.TU.Sc2ySwM_362.2895 Anthoceros agrestis HOM05D004652 ORTHO05D005634 1.7e-103 380.2 340 58.8
PSO675G7477 Papaver somniferum HOM05D004652 ORTHO05D005634 3.8e-103 379.0 311 56.3
Phvul.002G017100 Phaseolus vulgaris HOM05D004652 ORTHO05D005634 4.9e-103 378.6 321 56.7
Psat3g034240 Pisum sativum HOM05D004652 ORTHO05D005634 6.4e-103 378.3 320 55.9
GSVIVG01022087001 Vitis vinifera HOM05D004652 ORTHO05D005634 1.2e-101 374.0 333 54.4
CiPaw.01G015500 Carya illinoinensis HOM05D004652 ORTHO05D005634 2.1e-101 373.2 311 56.3
AUR62013234 Chenopodium quinoa HOM05D004652 ORTHO05D005634 2.1e-101 373.2 303 58.1
CSS0025726 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 4.6e-101 372.1 309 56.3
CiPaw.01G015800 Carya illinoinensis HOM05D004652 ORTHO05D005634 6.0e-101 371.7 311 55.6
Cc07_g06170 Coffea canephora HOM05D004652 ORTHO05D005634 6.0e-101 371.7 309 56.3
Sopen02g037740 Solanum pennellii HOM05D004652 ORTHO05D005634 6.0e-101 371.7 310 56.8
Lsat_1_v5_gn_4_165120 Lactuca sativa HOM05D004652 ORTHO05D005634 7.9e-101 371.3 306 56.9
Actinidia36476 Actinidia chinensis HOM05D004652 ORTHO05D005634 1.0e-100 370.9 309 56.0
Lalb_Chr05g0213341 Lupinus albus HOM05D004652 ORTHO05D005634 1.0e-100 370.9 330 54.5
VMungo1215G2858 Vigna mungo HOM05D004652 ORTHO05D005634 1.7e-100 370.2 332 54.2
Glyma.11G054000 Glycine max HOM05D004652 ORTHO05D005634 2.3e-100 369.8 315 55.6
arahy.Tifrunner.gnm1.ann1.EFTP1R Arachis hypogaea HOM05D004652 ORTHO05D005634 3.0e-100 369.4 336 54.5
DCAR_010876 Daucus carota HOM05D004652 ORTHO05D005634 3.0e-100 369.4 311 55.3
Solyc02g093170.4 Solanum lycopersicum HOM05D004652 ORTHO05D005634 3.0e-100 369.4 310 56.1
arahy.Tifrunner.gnm1.ann1.8Y90C0 Arachis hypogaea HOM05D004652 ORTHO05D005634 5.1e-100 368.6 336 54.5
Peaxi162Scf00549g00023 Petunia axillaris HOM05D004652 ORTHO05D005634 5.1e-100 368.6 309 56.6
Glyma.01G188100 Glycine max HOM05D004652 ORTHO05D005634 8.7e-100 367.9 315 56.5
Os03g0109700 Oryza sativa ssp. japonica HOM05D004652 ORTHO05D005634 8.7e-100 367.9 323 54.8
PGSC0003DMG400004028 Solanum tuberosum HOM05D004652 ORTHO05D005634 8.7e-100 367.9 311 56.3
TPR.G19549 Trifolium pratense HOM05D004652 ORTHO05D005634 8.7e-100 367.9 312 55.4
Cpa.g.sc55.119 Carica papaya HOM05D004652 ORTHO05D005634 1.1e-99 367.5 311 55.6
Lj7A73G20 Lonicera japonica HOM05D004652 ORTHO05D005634 1.5e-99 367.1 303 55.8
Potri.007G045900 Populus trichocarpa HOM05D004652 ORTHO05D005634 1.5e-99 367.1 304 58.2
FAN23G0595 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.9e-99 366.7 311 55.0
MELO3C020851.2 Cucumis melo HOM05D004652 ORTHO05D005634 3.3e-99 365.9 311 55.3
Migut.H00415 Erythranthe guttata HOM05D004652 ORTHO05D005634 3.3e-99 365.9 309 55.3
HanXRQChr15g0490761 Helianthus annuus HOM05D004652 ORTHO05D005634 4.3e-99 365.5 304 56.9
Hma1.2p1_0670F.1_g200440 Hydrangea macrophylla HOM05D004652 ORTHO05D005634 4.3e-99 365.5 309 56.3
CDE02G2369 Ceratophyllum demersum HOM05D004652 ORTHO05D005634 5.6e-99 365.2 308 54.9
FAN19G0057 Fragaria x ananassa HOM05D004652 ORTHO05D005634 5.6e-99 365.2 311 55.0
Manes.13G121100 Manihot esculenta HOM05D004652 ORTHO05D005634 5.6e-99 365.2 303 56.8
CsaV3_2G016420 Cucumis sativus L. HOM05D004652 ORTHO05D005634 7.3e-99 364.8 311 55.0
FvH4_1g16330 Fragaria vesca HOM05D004652 ORTHO05D005634 7.3e-99 364.8 311 55.0
Lj2g0023089 Lotus japonicus HOM05D004652 ORTHO05D005634 7.3e-99 364.8 321 54.2
Medtr7g104350 Medicago truncatula HOM05D004652 ORTHO05D005634 7.3e-99 364.8 316 54.1
QL06p040720 Quercus lobata HOM05D004652 ORTHO05D005634 7.3e-99 364.8 310 54.8
Duzib132G1249 Durio zibethinus HOM05D004652 ORTHO05D005634 2.1e-98 363.2 309 55.7
Nitab4.5_0001221g0030 Nicotiana tabacum HOM05D004652 ORTHO05D005634 2.1e-98 363.2 309 56.3
RcHm_v2.0_Chr2g0106191 Rosa chinensis HOM05D004652 ORTHO05D005634 2.1e-98 363.2 311 54.3
Gorai.007G215700 Gossypium raimondii HOM05D004652 ORTHO05D005634 2.8e-98 362.8 309 57.0
CSS0033708 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 3.6e-98 362.5 298 57.4
Aqoxy6G01262 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 4.8e-98 362.1 330 53.6
Gorai.013G045700 Gossypium raimondii HOM05D004652 ORTHO05D005634 4.8e-98 362.1 310 56.1
Atru.chr5.2643 Acer truncatum HOM05D004652 ORTHO05D005634 6.2e-98 361.7 315 55.2
Atru.chr5.2649 Acer truncatum HOM05D004652 ORTHO05D005634 6.2e-98 361.7 315 55.2
Haze_15373 Corylus avellana HOM05D004652 ORTHO05D005634 6.2e-98 361.7 338 52.4
GSVIVG01031712001 Vitis vinifera HOM05D004652 ORTHO05D005634 8.1e-98 361.3 309 56.6
MSTRG.23735 Avicennia marina HOM05D004652 ORTHO05D005634 1.1e-97 360.9 305 56.4
PGR102G1991 Punica granatum HOM05D004652 ORTHO05D005634 1.1e-97 360.9 306 55.2
Nitab4.5_0002765g0060 Nicotiana tabacum HOM05D004652 ORTHO05D005634 1.4e-97 360.5 313 55.6
TWI31G1310 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 1.8e-97 360.1 306 57.5
Gohir.A13G042200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 3.1e-97 359.4 310 55.5
MD02G1175800 Malus domestica HOM05D004652 ORTHO05D005634 3.1e-97 359.4 316 54.4
Potri.009G099600 Populus trichocarpa HOM05D004652 ORTHO05D005634 3.1e-97 359.4 303 56.8
Sabra09G0075900 Salix brachista HOM05D004652 ORTHO05D005634 3.1e-97 359.4 303 56.4
CANSAT25G2702 Cannabis sativa HOM05D004652 ORTHO05D005634 4.0e-97 359.0 313 54.3
Duzib147G0331 Durio zibethinus HOM05D004652 ORTHO05D005634 6.9e-97 358.2 335 52.2
Ciclev10025986m.g Citrus clementina HOM05D004652 ORTHO05D005634 9.0e-97 357.8 321 52.0
ECA232G0198 Erigeron canadensis HOM05D004652 ORTHO05D005634 1.5e-96 357.1 309 53.7
Eucgr.I01131 Eucalyptus grandis HOM05D004652 ORTHO05D005634 1.5e-96 357.1 317 52.4
Thecc.01G060000 Theobroma cacao HOM05D004652 ORTHO05D005634 2.0e-96 356.7 300 56.3
Thecc.02G103600 Theobroma cacao HOM05D004652 ORTHO05D005634 2.0e-96 356.7 309 55.3
Actinidia12037 Actinidia chinensis HOM05D004652 ORTHO05D005634 4.5e-96 355.5 338 51.5
TWI09G0879 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 4.5e-96 355.5 310 54.8
Sed0013827 Sechium edule HOM05D004652 ORTHO05D005634 7.6e-96 354.8 310 53.9
Gohir.A11G195100 Gossypium hirsutum HOM05D004652 ORTHO05D005634 9.9e-96 354.4 300 57.3
Sc07g0000730 Simmondsia chinensis HOM05D004652 ORTHO05D005634 1.3e-95 354.0 315 54.9
Sabra07G0041100 Salix brachista HOM05D004652 ORTHO05D005634 1.7e-95 353.6 338 53.6
FAN28G0632 Fragaria x ananassa HOM05D004652 ORTHO05D005634 2.9e-95 352.8 315 53.0
Zm00001eb404220 Zea mays HOM05D004652 ORTHO05D005634 2.9e-95 352.8 315 54.3
Ciclev10030127m.g Citrus clementina HOM05D004652 ORTHO05D005634 4.9e-95 352.1 339 51.6
EL10Ac9g22324 Beta vulgaris HOM05D004652 ORTHO05D005634 4.2e-94 349.0 347 49.3
unitig_736.g22389 Utricularia gibba HOM05D004652 ORTHO05D005634 5.4e-94 348.6 310 53.5
HPP92_024094 Vanilla planifolia HOM05D004652 ORTHO05D005634 1.6e-93 347.1 303 56.8
THA.LOC104807263 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 2.1e-93 346.7 302 55.3
AUR62010252 Chenopodium quinoa HOM05D004652 ORTHO05D005634 4.6e-93 345.5 281 58.7
Carub.0007s0633 Capsella rubella HOM05D004652 ORTHO05D005634 1.8e-92 343.6 304 53.9
CBR_g34458 Chara braunii HOM05D004652 ORTHO05D005634 2.3e-92 343.2 335 51.0
Sp7g31800 Schrenkiella parvula HOM05D004652 ORTHO05D005634 3.0e-92 342.8 325 51.7
Aa31LG2G16510 Aethionema arabicum HOM05D002471 ORTHO05D003712 8.7e-92 341.3 305 53.1
AT4G34090 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 1.5e-91 340.5 304 53.0
CARHR242200 Cardamine hirsuta HOM05D004652 ORTHO05D005634 1.9e-91 340.1 304 53.6
Eucgr.H01690 Eucalyptus grandis HOM05D004652 ORTHO05D005634 2.5e-91 339.7 306 52.9
Gohir.D11G201200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 4.3e-91 339.0 279 59.9
AL7G17310 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 9.6e-91 337.8 304 53.0
PSO541G5706 Papaver somniferum HOM05D004652 ORTHO05D005634 2.8e-90 336.3 318 50.3
BcaNung03359 Brassica carinata HOM05D004652 ORTHO05D005634 3.7e-90 335.9 325 50.2
Atru.chr3.293 Acer truncatum HOM05D004652 ORTHO05D005634 6.2e-90 335.1 317 52.4
Thhalv10025679m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 6.2e-90 335.1 325 50.5
Ah.01g017900 Amaranthus hybridus HOM05D004652 ORTHO05D005634 1.4e-89 334.0 278 55.4
THA.LOC104807591 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 1.8e-89 333.6 311 52.1
Hund13540 Selenicereus undatus HOM05D004652 ORTHO05D005634 2.4e-89 333.2 317 51.4
SGA_v2.0_scaffold143G35809 Striga asiatica HOM05D004652 ORTHO05D005634 1.5e-88 330.5 276 56.5
Oeu049898.1 Olea europaea HOM05D004652 ORTHO05D005634 8.4e-87 324.7 265 56.2
vmacro05311 Vaccinium macrocarpon HOM05D004652 ORTHO05D005634 2.5e-86 323.2 309 50.5
SGA_v2.0_scaffold34G13618 Striga asiatica HOM05D004652 ORTHO05D005634 3.2e-86 322.8 277 56.7
AUR62001905 Chenopodium quinoa HOM05D004652 ORTHO05D005634 2.3e-84 316.6 307 49.2
BolC8t51563H Brassica oleracea HOM05D004652 ORTHO05D005634 3.3e-83 312.8 321 47.4
AT2G23370 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 5.7e-83 312.0 310 47.7
BcaC07g40988 Brassica carinata HOM05D004652 ORTHO05D005634 1.3e-82 310.8 321 47.4
C08p39900 Brassica napus HOM05D004652 ORTHO05D005634 1.3e-82 310.8 321 47.4
CARHR293000 Cardamine hirsuta HOM05D004652 ORTHO05D005634 2.1e-82 310.1 310 48.4
A09p56940 Brassica napus HOM05D004652 ORTHO05D005634 2.8e-82 309.7 311 47.9
AL4G13280 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 1.1e-81 307.8 311 47.6
Carub.0004s0257 Capsella rubella HOM05D004652 ORTHO05D005634 5.3e-81 305.4 311 46.6
BraA09t41086Z Brassica rapa HOM05D004652 ORTHO05D005634 9.0e-81 304.7 311 47.3
Rhsim10G0114700 Rhododendron simsii HOM05D004652 ORTHO05D005634 9.0e-81 304.7 261 54.4
Sp4g02380 Schrenkiella parvula HOM05D004652 ORTHO05D005634 9.0e-81 304.7 311 46.9
AUR62003906 Chenopodium quinoa HOM05D004652 ORTHO05D005634 2.6e-80 303.1 285 52.6
Hund00119 Selenicereus undatus HOM05D004652 ORTHO05D005634 4.5e-80 302.4 308 49.4
Prupe.6G231900 Prunus persica HOM05D004652 ORTHO05D005634 1.0e-79 301.2 274 54.0
BraA03t15329Z Brassica rapa HOM05D004652 ORTHO05D005634 8.4e-79 298.1 316 47.8
BolC7t46455H Brassica oleracea HOM05D004652 ORTHO05D005634 5.5e-78 295.4 327 46.2
COL.COLO4_24563 Corchorus olitorius HOM05D004652 ORTHO05D005634 7.9e-77 291.6 247 58.3
C07p60150 Brassica napus HOM05D004652 ORTHO05D005634 1.4e-73 280.8 354 42.7
A03p62590 Brassica napus HOM05D004652 ORTHO05D005634 5.3e-73 278.9 354 42.4
Aa31LG7G13600 Aethionema arabicum HOM05D004652 ORTHO05D005634 2.0e-72 276.9 354 42.1
Thhalv10000243m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 2.1e-69 266.9 322 43.2
Cpa.g.sc200.27 Carica papaya HOM05D004652 ORTHO05D005634 3.0e-68 263.1 324 44.8
ClCG02G012270 Citrullus lanatus HOM05D004652 ORTHO05D005634 3.9e-68 262.7 231 53.7
EL10Ac6g15724 Beta vulgaris HOM05D004652 ORTHO05D005634 1.5e-67 260.8 231 53.7
COL.COLO4_32629 Corchorus olitorius HOM05D004652 ORTHO05D005634 7.7e-64 248.4 310 42.9
Ca_08994_v3 Cicer arietinum L. HOM05D004652 ORTHO05D005634 1.4e-62 244.2 332 40.4
SEGI_25477 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 5.5e-62 242.3 160 70.6
SEGI_26044 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 5.5e-62 242.3 160 70.6
Ah.02g125990 Amaranthus hybridus HOM05D004652 ORTHO05D005634 2.7e-61 240.0 284 44.0
Gohir.D13G040700 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.5e-56 224.2 204 54.9
Eucgr.I01132 Eucalyptus grandis HOM05D004652 ORTHO05D005634 1.3e-55 221.1 206 50.5
FAN26G0096 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.7e-55 220.7 160 62.5
Oeu004436.1 Olea europaea HOM05D004652 ORTHO05D005634 1.9e-54 217.2 315 41.6
Cre13.g563150 Chlamydomonas reinhardtii HOM05D004652 ORTHO05D005634 1.1e-46 191.4 325 36.3
Aqoxy2G01254 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 1.5e-46 191.0 136 62.5
TAR381G1258 Trochodendron aralioides HOM05D004652 ORTHO05D005634 2.3e-44 183.7 177 48.6
PRCOL_00001748 Prasinoderma coloniale HOM05D004652 ORTHO05D005634 1.0e-39 168.3 307 35.5
MCO15G669 Micromonas commoda HOM05D004652 ORTHO05D005634 1.9e-38 164.1 309 34.0
TAR381G1342 Trochodendron aralioides HOM05D004652 ORTHO05D005634 1.8e-36 157.5 109 62.4
Aqoxy4G02413 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 5.7e-35 152.5 130 58.5
MCO09G010 Micromonas commoda HOM05D004652 ORTHO05D005634 2.7e-32 143.7 359 31.2
ECA248G0229 Erigeron canadensis HOM05D004652 ORTHO05D005634 1.3e-31 141.4 115 54.8
Potri.001G304401 Populus trichocarpa HOM05D004652 ORTHO05D005634 2.7e-24 117.1 128 49.2
TAR381G1519 Trochodendron aralioides HOM05D004652 ORTHO05D005634 2.3e-20 104.0 80 57.5
Sabra07G0040900 Salix brachista HOM05D015619 ORTHO05D009044 3.5e-16 90.1 78 55.1
Lalb_Chr09g0323281 Lupinus albus HOM05D004652 ORTHO05D005634 1.5e-14 84.7 166 32.5
CDE01G0594 Ceratophyllum demersum HOM05D000934 ORTHO05D000746 4.9e-10 69.7 104 37.5
Cc00_g07740 Coffea canephora HOM05D004652 ORTHO05D005634 1.1e-06 58.5 69 42.0


User provided reference genes

Program Settings