Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0032s0003 Marchantia polymorpha HOM05D005724 ORTHO05D006636 0.0e+00 1108.2 636 100.0
Mapoly0029s0120 Marchantia polymorpha HOM05D005724 ORTHO05D006636 1.1e-310 1069.3 636 95.9
AagrBONN_evm.TU.Sc2ySwM_228.2542 Anthoceros agrestis HOM05D005724 ORTHO05D006636 6.5e-125 452.2 671 50.1
Pp3c2_10220 Physcomitrium patens HOM05D005724 ORTHO05D006636 4.6e-110 402.9 658 48.2
ATR0307G120 Amborella trichopoda HOM05D005724 ORTHO05D006636 1.3e-101 374.8 671 39.5
SEGI_23235 Sequoiadendron giganteum HOM05D005724 ORTHO05D006636 5.2e-98 362.8 728 42.9
TAR623G1038 Trochodendron aralioides HOM05D005724 ORTHO05D006636 1.5e-92 344.7 673 40.7
TAR369G1103 Trochodendron aralioides HOM05D005724 ORTHO05D006636 1.2e-91 341.7 672 39.6
Hma1.2p1_0023F.1_g015530 Hydrangea macrophylla HOM05D005724 ORTHO05D006636 2.1e-91 340.9 674 38.7
CSS0043370 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 1.8e-90 337.8 673 39.7
Actinidia03489 Actinidia chinensis HOM05D005724 ORTHO05D006636 1.2e-86 325.1 672 38.5
Aqoxy1G00698 Aquilegia oxysepala HOM05D005724 ORTHO05D006636 2.7e-86 323.9 682 38.9
SGA_v2.0_scaffold52G18986 Striga asiatica HOM05D005724 ORTHO05D006636 9.0e-82 308.9 680 40.3
Sc16g0010460 Simmondsia chinensis HOM05D005724 ORTHO05D006636 1.2e-81 308.5 679 36.7
Dinv40379 Davidia involucrata HOM05D005724 ORTHO05D006636 2.6e-81 307.4 680 37.5
Eucgr.H01410 Eucalyptus grandis HOM05D005724 ORTHO05D006636 1.7e-80 304.7 687 38.1
MSTRG.1463 Avicennia marina HOM05D005724 ORTHO05D006636 3.8e-80 303.5 646 41.5
DCAR_014109 Daucus carota HOM05D005724 ORTHO05D006636 6.4e-80 302.8 667 36.6
TWI12G1283 Tripterygium wilfordii HOM05D005724 ORTHO05D006636 4.2e-79 300.1 687 37.8
Ca_00849_v3 Cicer arietinum L. HOM05D005724 ORTHO05D006636 5.4e-79 299.7 602 36.7
vmacro00813 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 7.1e-79 299.3 674 36.4
SMO118G0180 Selaginella moellendorffii HOM05D005724 ORTHO05D006636 9.3e-79 298.9 632 42.9
Sabra01G0096300 Salix brachista HOM05D005724 ORTHO05D006636 4.6e-78 296.6 661 37.4
unitig_46.g18493 Utricularia gibba HOM05D005724 ORTHO05D006636 6.0e-78 296.2 674 36.9
CsaV3_4G029120 Cucumis sativus L. HOM05D005724 ORTHO05D006636 1.0e-77 295.4 677 38.6
MBI13_g30854_MAGBIO Magnolia biondii HOM05D005724 ORTHO05D006636 5.1e-77 293.1 709 36.7
Nn2g11375 Nelumbo nucifera HOM05D005724 ORTHO05D006636 1.5e-76 291.6 551 44.5
PGR031G2108 Punica granatum HOM05D005724 ORTHO05D006636 3.3e-76 290.4 716 34.6
CiPaw.07G081600 Carya illinoinensis HOM05D005724 ORTHO05D006636 2.1e-75 287.7 679 34.6
COL.COLO4_36609 Corchorus olitorius HOM05D005724 ORTHO05D006636 3.6e-75 287.0 589 38.2
PGSC0003DMG400013918 Solanum tuberosum HOM05D005724 ORTHO05D006636 4.8e-75 286.6 587 39.2
Oeu040430.1 Olea europaea HOM05D005724 ORTHO05D006636 1.4e-74 285.0 692 35.5
Ah.06g195410 Amaranthus hybridus HOM05D005724 ORTHO05D006636 4.0e-74 283.5 660 41.1
CSS0028855 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 4.0e-74 283.5 548 40.9
CDE09G0189 Ceratophyllum demersum HOM05D005724 ORTHO05D006636 2.0e-73 281.2 467 46.7
Manes.13G004400 Manihot esculenta HOM05D005724 ORTHO05D006636 3.4e-73 280.4 702 36.0
Psat0s1379g0200 Pisum sativum HOM05D005724 ORTHO05D006636 4.5e-73 280.0 634 34.4
Lalb_Chr18g0058031 Lupinus albus HOM05D005724 ORTHO05D006636 2.2e-72 277.7 690 34.8
Ciclev10011241m.g Citrus clementina HOM05D005724 ORTHO05D006636 3.8e-72 276.9 707 35.5
Aa31LG8G10800 Aethionema arabicum HOM05D005724 ORTHO05D006636 4.9e-72 276.6 581 38.9
Atru.chr12.1744 Acer truncatum HOM05D005724 ORTHO05D006636 2.4e-71 274.2 717 35.0
Sed0018672 Sechium edule HOM05D005724 ORTHO05D006636 2.4e-71 274.2 693 35.6
Phvul.006G127600 Phaseolus vulgaris HOM05D005724 ORTHO05D006636 1.6e-70 271.6 611 36.5
Sopen07g032510 Solanum pennellii HOM05D005724 ORTHO05D006636 3.5e-70 270.4 591 38.6
Migut.C01153 Erythranthe guttata HOM05D005724 ORTHO05D006636 4.6e-70 270.0 681 36.1
VMungo0540G1901 Vigna mungo HOM05D005724 ORTHO05D006636 6.0e-70 269.6 702 33.6
Lj6g0014403 Lotus japonicus HOM05D005724 ORTHO05D006636 1.3e-69 268.5 714 34.6
Thecc.05G190100 Theobroma cacao HOM05D005724 ORTHO05D006636 2.3e-69 267.7 722 35.2
THA.LOC104821618 Tarenaya hassleriana HOM05D005724 ORTHO05D006636 3.9e-69 266.9 589 37.7
Gorai.004G263700 Gossypium raimondii HOM05D005724 ORTHO05D006636 1.5e-68 265.0 646 35.1
Solyc07g064350.3 Solanum lycopersicum HOM05D005724 ORTHO05D006636 4.8e-67 260.0 593 37.8
CAN.G219.49 Capsicum annuum HOM05D005724 ORTHO05D006636 1.8e-66 258.1 676 34.6
Glyma.15G131100 Glycine max HOM05D005724 ORTHO05D006636 2.4e-66 257.7 720 34.9
Gohir.D08G247200 Gossypium hirsutum HOM05D005724 ORTHO05D006636 3.1e-66 257.3 687 33.5
Cc10_g09550 Coffea canephora HOM05D005724 ORTHO05D006636 5.3e-66 256.5 706 33.7
Gohir.A08G226800 Gossypium hirsutum HOM05D005724 ORTHO05D006636 3.4e-65 253.8 657 34.2
Peaxi162Scf00691g00055 Petunia axillaris HOM05D005724 ORTHO05D006636 5.8e-65 253.1 702 35.8
Duzib168G0454 Durio zibethinus HOM05D005724 ORTHO05D006636 7.6e-65 252.7 643 36.9
Potri.001G125200 Populus trichocarpa HOM05D005724 ORTHO05D006636 7.6e-65 252.7 659 34.4
SalBow2G0175 Salvia bowleyana HOM05D005724 ORTHO05D006636 9.9e-65 252.3 668 37.6
AT3G24080 Arabidopsis thaliana HOM05D005724 ORTHO05D006636 2.9e-64 250.8 571 39.4
Cfa006250 Carpinus fangiana HOM05D005724 ORTHO05D006636 3.8e-64 250.4 665 33.8
CARHR100150 Cardamine hirsuta HOM05D005724 ORTHO05D006636 4.9e-64 250.0 540 40.0
Glyma.09G025000 Glycine max HOM05D005724 ORTHO05D006636 1.4e-63 248.4 721 34.1
RhsimUnG0095000 Rhododendron simsii HOM05D005724 ORTHO05D006636 1.4e-63 248.4 673 32.5
Carub.0003s2445 Capsella rubella HOM05D005724 ORTHO05D006636 1.9e-63 248.1 679 35.8
TPR.G26364 Trifolium pratense HOM05D005724 ORTHO05D006636 1.9e-63 248.1 646 34.7
Os05g0490000 Oryza sativa ssp. japonica HOM05D005724 ORTHO05D006636 9.3e-63 245.7 554 36.5
CBR_g46717 Chara braunii HOM05D005724 ORTHO05D006636 2.7e-62 244.2 615 38.4
arahy.Tifrunner.gnm1.ann1.GIZW0B Arachis hypogaea HOM05D005724 ORTHO05D006636 1.0e-61 242.3 713 32.3
HanXRQChr16g0529541 Helianthus annuus HOM05D005724 ORTHO05D006636 1.3e-61 241.9 671 38.6
arahy.Tifrunner.gnm1.ann1.EBNE7V Arachis hypogaea HOM05D005724 ORTHO05D006636 3.0e-61 240.7 711 31.6
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 5.1e-61 240.0 674 35.6
CANSAT35G0128 Cannabis sativa HOM05D005724 ORTHO05D006636 1.1e-60 238.8 676 37.3
PSO133G0013 Papaver somniferum HOM05D005724 ORTHO05D006636 3.3e-60 237.3 686 33.1
Lsat_1_v5_gn_4_15540 Lactuca sativa HOM05D005724 ORTHO05D006636 7.4e-60 236.1 661 34.5
RcHm_v2.0_Chr3g0447651 Rosa chinensis HOM05D005724 ORTHO05D006636 9.6e-60 235.7 739 34.5
AL3G39270 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 2.8e-59 234.2 566 37.1
Lj2C388T1 Lonicera japonica HOM05D005724 ORTHO05D006636 2.8e-59 234.2 659 35.2
Oeu026139.1 Olea europaea HOM05D005724 ORTHO05D006636 2.8e-59 234.2 545 37.8
Medtr2g030390 Medicago truncatula HOM05D005724 ORTHO05D006636 6.2e-59 233.0 684 32.3
Nitab4.5_0001290g0080 Nicotiana tabacum HOM05D005724 ORTHO05D006636 6.2e-59 233.0 595 39.0
AUR62041171 Chenopodium quinoa HOM05D005724 ORTHO05D006636 4.0e-58 230.3 428 46.3
PSO541G5859 Papaver somniferum HOM05D005724 ORTHO05D006636 4.0e-58 230.3 694 33.1
AL8G20560 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 2.0e-57 228.0 614 34.2
HPP92_010851 Vanilla planifolia HOM05D005724 ORTHO05D006636 4.5e-57 226.9 410 40.0
QL03p046485 Quercus lobata HOM05D005724 ORTHO05D006636 7.6e-57 226.1 680 32.8
Zm00001eb227770 Zea mays HOM05D005724 ORTHO05D006636 2.9e-56 224.2 645 36.1
Nitab4.5_0003319g0010 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.1e-55 222.2 677 34.7
SHI13708 Sapria himalayana HOM05D005724 ORTHO05D006636 2.5e-55 221.1 644 31.8
Haze_04583 Corylus avellana HOM05D005724 ORTHO05D006636 9.3e-55 219.2 675 30.8
ClCG09G009940 Citrullus lanatus HOM05D005724 ORTHO05D006636 3.0e-53 214.2 673 34.2
Prupe.6G362700 Prunus persica HOM05D005724 ORTHO05D006636 5.1e-53 213.4 678 33.9
FvH4_6g00350 Fragaria vesca HOM05D005724 ORTHO05D006636 2.5e-52 211.1 725 33.4
Nitab4.5_0000193g0130 Nicotiana tabacum HOM05D005724 ORTHO05D006636 7.4e-52 209.5 680 33.8
AUR62029295 Chenopodium quinoa HOM05D005724 ORTHO05D006636 3.7e-51 207.2 413 45.0
BolC7t41765H Brassica oleracea HOM05D005724 ORTHO05D006636 1.1e-50 205.7 639 35.4
C07p12790 Brassica napus HOM05D005724 ORTHO05D006636 5.3e-50 203.4 644 35.6
BcaC06g35627 Brassica carinata HOM05D005724 ORTHO05D006636 1.2e-49 202.2 647 35.4
BcaB06g26592 Brassica carinata HOM05D005724 ORTHO05D006636 2.0e-49 201.4 580 30.7
BraA07t28608Z Brassica rapa HOM05D005724 ORTHO05D006636 2.6e-49 201.1 646 35.3
MELO3C000397.2 Cucumis melo HOM05D005724 ORTHO05D006636 2.6e-49 201.1 595 35.0
A07p08250 Brassica napus HOM05D005724 ORTHO05D006636 1.0e-48 199.1 642 35.2
ECA234G3960 Erigeron canadensis HOM05D005724 ORTHO05D006636 1.0e-48 199.1 689 32.5
vmacro22819 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 1.3e-48 198.7 642 30.5
Cre10.g441450 Chlamydomonas reinhardtii HOM05D005724 ORTHO05D006636 1.1e-47 195.7 620 36.3
MCO14G354 Micromonas commoda HOM05D005724 ORTHO05D006636 1.1e-47 195.7 579 35.6
MD12G1263700 Malus domestica HOM05D005724 ORTHO05D006636 2.1e-46 191.4 718 32.6
QL10p055704 Quercus lobata HOM05D005724 ORTHO05D006636 3.3e-44 184.1 676 29.1
Nitab4.5_0013479g0020 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.3e-43 182.2 566 32.9
AagrBONN_evm.TU.Sc2ySwM_344.5238 Anthoceros agrestis HOM05D005724 ORTHO05D006636 8.2e-43 179.5 523 36.9
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.8e-42 178.3 448 35.5
QL10p055615 Quercus lobata HOM05D005724 ORTHO05D006636 1.8e-42 178.3 672 29.8
CSS0001117 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 1.9e-39 168.3 327 39.8
Sp3g21860 Schrenkiella parvula HOM05D005724 ORTHO05D006636 4.7e-38 163.7 650 32.6
PRCOL_00003643 Prasinoderma coloniale HOM05D005724 ORTHO05D006636 1.8e-34 151.8 585 28.9
Peaxi162Scf00916g00115 Petunia axillaris HOM05D005724 ORTHO05D006636 6.5e-32 143.3 370 38.6
Dinv27342 Davidia involucrata HOM05D005724 ORTHO05D006636 2.7e-30 137.9 318 34.6
Nitab4.5_0005621g0050 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.4e-29 135.6 228 42.5
Glyma.13G144202 Glycine max HOM05D005724 ORTHO05D006636 4.8e-27 127.1 219 40.2
Cfa025790 Carpinus fangiana HOM05D005724 ORTHO05D006636 1.7e-24 118.6 650 29.5
Dinv27343 Davidia involucrata HOM05D005724 ORTHO05D006636 6.7e-21 106.7 146 43.8
MSTRG.22873 Avicennia marina HOM05D005724 ORTHO05D006636 1.7e-19 102.1 170 38.8
Cpa.g.sc48.98 Carica papaya HOM05D005724 ORTHO05D006636 1.8e-18 98.6 237 35.9
AL8G20410 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 8.5e-16 89.7 63 60.3
Psat1g166960 Pisum sativum HOM05D005724 ORTHO05D006636 5.5e-15 87.0 337 29.1
MD04G1246400 Malus domestica HOM05D005724 ORTHO05D006636 2.6e-12 78.2 106 45.3
Peaxi162Scf00916g00131 Petunia axillaris HOM05D005724 ORTHO05D006636 4.8e-11 73.9 170 33.5
PSO339G2657 Papaver somniferum HOM05D005724 ORTHO05D006636 9.1e-10 69.7 163 32.5
MELO3C017820.2 Cucumis melo HOM05D005724 ORTHO05D006636 5.5e-07 60.5 140 30.7
MELO3C003738.2 Cucumis melo HOM05D005724 ORTHO05D006636 9.5e-07 59.7 139 29.5
Nitab4.5_0005621g0090 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.2e-06 59.3 121 33.9


User provided reference genes

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