Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0031s0189 Marchantia polymorpha HOM05D006840 ORTHO05D008588 3.0e-182 641.7 330 100.0
Pp3c9_3810 Physcomitrium patens HOM05D006840 ORTHO05D008588 1.1e-83 314.3 264 60.2
SMO353G0271 Selaginella moellendorffii HOM05D006840 ORTHO05D008588 1.8e-81 307.0 264 62.1
Migut.F02113 Erythranthe guttata HOM05D006840 ORTHO05D008588 2.6e-72 276.6 237 58.6
PGR119G2059 Punica granatum HOM05D006840 ORTHO05D008588 2.8e-71 273.1 245 56.3
AUR62000298 Chenopodium quinoa HOM05D006840 ORTHO05D008588 3.7e-71 272.7 238 58.8
HanXRQChr15g0492181 Helianthus annuus HOM05D006840 ORTHO05D008588 3.7e-71 272.7 238 58.8
Manes.13G004800 Manihot esculenta HOM05D006840 ORTHO05D008588 3.7e-71 272.7 241 57.7
AUR62006644 Chenopodium quinoa HOM05D006840 ORTHO05D008588 6.3e-71 271.9 250 56.8
Lsat_1_v5_gn_0_18400 Lactuca sativa HOM05D006840 ORTHO05D008588 8.2e-71 271.6 238 59.7
Sc06g0005020 Simmondsia chinensis HOM05D006840 ORTHO05D008588 8.2e-71 271.6 249 54.6
Eucgr.B01421 Eucalyptus grandis HOM05D006840 ORTHO05D008588 1.1e-70 271.2 253 55.3
Glyma.09G249400 Glycine max HOM05D006840 ORTHO05D008588 2.4e-70 270.0 245 56.3
CAN.G642.5 Capsicum annuum HOM05D006840 ORTHO05D008588 4.1e-70 269.2 237 57.4
GSVIVG01019072001 Vitis vinifera HOM05D006840 ORTHO05D008588 5.3e-70 268.9 241 56.4
CANSAT54G1191 Cannabis sativa HOM05D006840 ORTHO05D008588 7.0e-70 268.5 253 54.2
CiPaw.08G114500 Carya illinoinensis HOM05D006840 ORTHO05D008588 9.1e-70 268.1 238 57.1
ECA232G2794 Erigeron canadensis HOM05D006840 ORTHO05D008588 9.1e-70 268.1 238 58.4
HanXRQChr15g0491491 Helianthus annuus HOM05D006840 ORTHO05D008588 9.1e-70 268.1 238 58.4
TWI36G0520 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 9.1e-70 268.1 238 56.3
Glyma.18G243000 Glycine max HOM05D006840 ORTHO05D008588 1.2e-69 267.7 237 58.2
Gohir.A08G226600 Gossypium hirsutum HOM05D006840 ORTHO05D008588 2.6e-69 266.5 253 54.5
Os01g0912700 Oryza sativa ssp. japonica HOM05D006840 ORTHO05D008588 2.6e-69 266.5 242 55.8
Pp3c15_10950 Physcomitrium patens HOM05D006840 ORTHO05D008588 3.5e-69 266.2 232 59.9
MELO3C010008.2 Cucumis melo HOM05D006840 ORTHO05D008588 4.5e-69 265.8 250 53.2
Rhsim06G0181200 Rhododendron simsii HOM05D006840 ORTHO05D008588 4.5e-69 265.8 238 56.3
CsaV3_1G044150 Cucumis sativus L. HOM05D006840 ORTHO05D008588 5.9e-69 265.4 250 53.2
Lj1A575G23 Lonicera japonica HOM05D006840 ORTHO05D008588 5.9e-69 265.4 262 53.4
PGSC0003DMG400010521 Solanum tuberosum HOM05D006840 ORTHO05D008588 5.9e-69 265.4 235 57.4
Atru.BG.274.p Acer truncatum HOM05D006840 ORTHO05D008588 7.7e-69 265.0 236 55.1
Gohir.D08G247000 Gossypium hirsutum HOM05D006840 ORTHO05D008588 7.7e-69 265.0 253 54.2
Solyc04g056580.3 Solanum lycopersicum HOM05D006840 ORTHO05D008588 1.3e-68 264.2 256 55.5
MD12G1264100 Malus domestica HOM05D006840 ORTHO05D008588 1.7e-68 263.8 253 52.2
TWI75G0198 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 1.7e-68 263.8 238 55.9
EL10Ac4g09995 Beta vulgaris HOM05D006840 ORTHO05D008588 2.9e-68 263.1 238 55.0
RcHm_v2.0_Chr3g0447741 Rosa chinensis HOM05D006840 ORTHO05D008588 2.9e-68 263.1 249 53.8
Duzib106G1767 Durio zibethinus HOM05D006840 ORTHO05D008588 3.8e-68 262.7 238 55.9
Nitab4.5_0000083g0050 Nicotiana tabacum HOM05D006840 ORTHO05D008588 3.8e-68 262.7 238 56.3
Psat3g102720 Pisum sativum HOM05D006840 ORTHO05D008588 5.0e-68 262.3 245 55.5
Sed0002286 Sechium edule HOM05D006840 ORTHO05D008588 5.0e-68 262.3 238 55.0
AL2G20230 Arabidopsis lyrata HOM05D006840 ORTHO05D008588 6.5e-68 261.9 237 54.9
Sopen04g025500 Solanum pennellii HOM05D006840 ORTHO05D008588 6.5e-68 261.9 256 55.1
FvH4_6g00410 Fragaria vesca HOM05D006840 ORTHO05D008588 8.5e-68 261.5 245 54.7
SalBow1G4059 Salvia bowleyana HOM05D006840 ORTHO05D008588 8.5e-68 261.5 273 53.1
CSS0048734 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 1.1e-67 261.2 238 55.0
CARHR056840 Cardamine hirsuta HOM05D006840 ORTHO05D008588 1.1e-67 261.2 238 55.5
TPR.G23771 Trifolium pratense HOM05D006840 ORTHO05D008588 1.1e-67 261.2 245 55.5
Lalb_Chr03g0038681 Lupinus albus HOM05D006840 ORTHO05D008588 1.5e-67 260.8 245 56.3
MD04G1245900 Malus domestica HOM05D006840 ORTHO05D008588 1.5e-67 260.8 240 52.9
MSTRG.27397 Avicennia marina HOM05D006840 ORTHO05D008588 1.9e-67 260.4 238 55.9
Peaxi162Scf00529g00710 Petunia axillaris HOM05D006840 ORTHO05D008588 1.9e-67 260.4 238 55.5
QL01p049413 Quercus lobata HOM05D006840 ORTHO05D008588 2.5e-67 260.0 237 54.4
FAN09G3232 Fragaria x ananassa HOM05D006840 ORTHO05D008588 3.2e-67 259.6 245 54.3
PSO170G0121 Papaver somniferum HOM05D006840 ORTHO05D008588 3.2e-67 259.6 259 51.4
Carub.0002s1076 Capsella rubella HOM05D006840 ORTHO05D008588 4.2e-67 259.2 237 54.0
PSO357G0633 Papaver somniferum HOM05D006840 ORTHO05D008588 4.2e-67 259.2 259 51.0
AT1G65230 Arabidopsis thaliana HOM05D006840 ORTHO05D008588 9.4e-67 258.1 237 53.6
Phvul.008G053500 Phaseolus vulgaris HOM05D006840 ORTHO05D008588 9.4e-67 258.1 248 54.8
ATR0215G001 Amborella trichopoda HOM05D006840 ORTHO05D008588 3.6e-66 256.1 243 54.7
Lj1g0027213 Lotus japonicus HOM05D006840 ORTHO05D008588 6.1e-66 255.4 245 52.7
Oeu020467.1 Olea europaea HOM05D006840 ORTHO05D008588 8.0e-66 255.0 228 56.1
Prupe.6G362300 Prunus persica HOM05D006840 ORTHO05D008588 1.0e-65 254.6 240 52.1
arahy.Tifrunner.gnm1.ann1.SXK3FV Arachis hypogaea HOM05D006840 ORTHO05D008588 1.4e-65 254.2 271 51.7
Nitab4.5_0009290g0020 Nicotiana tabacum HOM05D006840 ORTHO05D008588 1.8e-65 253.8 249 53.4
BcaB05g24097 Brassica carinata HOM05D006840 ORTHO05D008588 3.0e-65 253.1 237 52.7
vmacro12041 Vaccinium macrocarpon HOM05D006840 ORTHO05D008588 3.9e-65 252.7 250 52.8
DCAR_028385 Daucus carota HOM05D006840 ORTHO05D008588 5.2e-65 252.3 257 52.5
BcaC03g14685 Brassica carinata HOM05D006840 ORTHO05D008588 6.7e-65 251.9 237 52.3
BolC2t08265H Brassica oleracea HOM05D006840 ORTHO05D008588 6.7e-65 251.9 237 52.3
Gorai.004G263500 Gossypium raimondii HOM05D006840 ORTHO05D008588 6.7e-65 251.9 278 49.3
A02p13110 Brassica napus HOM05D006840 ORTHO05D008588 8.8e-65 251.5 237 52.3
BraA02t06367Z Brassica rapa HOM05D006840 ORTHO05D008588 8.8e-65 251.5 237 52.3
Potri.013G085300 Populus trichocarpa HOM05D006840 ORTHO05D008588 8.8e-65 251.5 253 52.6
Aa31LG2G2360 Aethionema arabicum HOM05D006840 ORTHO05D008588 1.1e-64 251.1 237 51.9
Medtr7g080220 Medicago truncatula HOM05D006840 ORTHO05D008588 1.1e-64 251.1 236 56.4
VMungo1383G2163 Vigna mungo HOM05D006840 ORTHO05D008588 1.1e-64 251.1 263 53.2
ClCG03G011690 Citrullus lanatus HOM05D006840 ORTHO05D008588 2.6e-64 250.0 280 46.8
THA.LOC104821923 Tarenaya hassleriana HOM05D006840 ORTHO05D008588 2.6e-64 250.0 250 51.2
C02p21250 Brassica napus HOM05D006840 ORTHO05D008588 3.3e-64 249.6 237 51.9
Thhalv10018969m.g Eutrema salsugineum HOM05D006840 ORTHO05D008588 4.4e-64 249.2 237 52.3
SGA_v2.0_scaffold62G21495 Striga asiatica HOM05D006840 ORTHO05D008588 7.4e-64 248.4 240 52.1
Sabra13G0078300 Salix brachista HOM05D006840 ORTHO05D008588 1.3e-63 247.7 253 51.8
HPP92_000447 Vanilla planifolia HOM05D006840 ORTHO05D008588 2.8e-63 246.5 236 53.0
Cc09_g03780 Coffea canephora HOM05D006840 ORTHO05D008588 4.8e-63 245.7 259 50.6
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 4.8e-63 245.7 251 54.2
CSS0032443 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 1.4e-62 244.2 232 53.4
Hund21908 Selenicereus undatus HOM05D006840 ORTHO05D008588 1.8e-62 243.8 278 46.8
Sp5g19910 Schrenkiella parvula HOM05D006840 ORTHO05D008588 1.2e-61 241.1 237 51.1
arahy.Tifrunner.gnm1.ann1.1ED5VS Arachis hypogaea HOM05D006840 ORTHO05D008588 5.9e-61 238.8 245 51.8
Cfa006254 Carpinus fangiana HOM05D006840 ORTHO05D008588 1.3e-60 237.7 219 54.8
AagrBONN_evm.TU.Sc2ySwM_228.2548 Anthoceros agrestis HOM05D006840 ORTHO05D008588 6.5e-60 235.3 247 53.0
Haze_04572 Corylus avellana HOM05D006840 ORTHO05D008588 1.9e-59 233.8 201 57.2
CBR_g8822 Chara braunii HOM05D006840 ORTHO05D008588 4.2e-59 232.6 227 52.0
Dinv29090 Davidia involucrata HOM05D006840 ORTHO05D008588 8.0e-58 228.4 219 53.4
Aqoxy5G00025 Aquilegia oxysepala HOM05D006840 ORTHO05D008588 1.8e-57 227.3 231 53.7
Thecc.05G192600 Theobroma cacao HOM05D006840 ORTHO05D008588 3.0e-57 226.5 206 54.9
FAN05G5535 Fragaria x ananassa HOM05D006840 ORTHO05D008588 4.0e-57 226.1 215 53.5
FAN02G1048 Fragaria x ananassa HOM05D006840 ORTHO05D008588 5.2e-57 225.7 215 53.0
FAN14G4782 Fragaria x ananassa HOM05D006840 ORTHO05D008588 1.5e-56 224.2 215 53.0
Cpa.g.sc39.39 Carica papaya HOM05D006840 ORTHO05D008588 1.4e-54 217.6 237 48.9
CDE02G0188 Ceratophyllum demersum HOM05D006840 ORTHO05D008588 4.1e-54 216.1 225 49.3
Ciclev10013335m.g Citrus clementina HOM05D006840 ORTHO05D008588 9.1e-54 214.9 250 48.4
Ca_07995_v3 Cicer arietinum L. HOM05D006840 ORTHO05D008588 2.0e-53 213.8 215 52.1
Lj1A595G27 Lonicera japonica HOM05D006840 ORTHO05D008588 5.9e-53 212.2 161 63.4
Nn7g37259 Nelumbo nucifera HOM05D006840 ORTHO05D008588 3.8e-52 209.5 238 47.5
unitig_22.g5732 Utricularia gibba HOM05D006840 ORTHO05D008588 8.5e-52 208.4 230 51.3
SEGI_09257 Sequoiadendron giganteum HOM05D006840 ORTHO05D008588 1.5e-51 207.6 197 52.3
Actinidia31085 Actinidia chinensis HOM05D006840 ORTHO05D008588 1.0e-44 184.9 218 46.3
MBI19_g03256_MAGBIO Magnolia biondii HOM05D006840 ORTHO05D008588 4.7e-42 176.0 207 46.4
MBI07_g00615_MAGBIO Magnolia biondii HOM05D006840 ORTHO05D008588 5.2e-33 146.0 148 50.0
MCO02G353 Micromonas commoda HOM05D006840 ORTHO05D008588 1.6e-29 134.4 224 34.8
Cre12.g536800 Chlamydomonas reinhardtii HOM05D006840 ORTHO05D008588 1.8e-17 94.4 258 28.7
SEGI_35940 Sequoiadendron giganteum HOM05D006840 ORTHO05D008588 8.4e-15 85.5 59 67.8
Zm00001eb424130 Zea mays HOM05D006840 ORTHO05D008588 3.9e-12 76.6 87 49.4
Zm00001eb424170 Zea mays HOM05D006840 ORTHO05D008588 3.9e-12 76.6 87 49.4
Actinidia34706 Actinidia chinensis HOM05D006840 ORTHO05D008588 4.3e-11 73.2 134 38.1
PRCOL_00007103 Prasinoderma coloniale HOM05D006840 ORTHO05D008588 4.7e-10 69.7 229 28.8


User provided reference genes

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