Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0031s0171 Marchantia polymorpha HOM05D011060 ORTHO05D254266 3.3e-124 448.4 219 100.0
Mapoly0031s0168 Marchantia polymorpha HOM05D000059 ORTHO05D256657 5.3e-42 175.3 214 43.9
Mapoly0031s0166 Marchantia polymorpha HOM05D000055 ORTHO05D255384 2.8e-35 152.9 210 37.6
Mapoly0031s0165 Marchantia polymorpha HOM05D000059 ORTHO05D252505 7.2e-31 138.3 212 38.2
Mapoly0004s0218 Marchantia polymorpha HOM05D011060 ORTHO05D251177 1.5e-15 87.4 224 29.0
Mapoly0031s0167 Marchantia polymorpha HOM05D011060 ORTHO05D252122 2.1e-14 83.6 84 50.0
Mapoly0004s0225 Marchantia polymorpha HOM05D011060 ORTHO05D251632 1.4e-13 80.9 154 30.5
Mapoly0031s0185 Marchantia polymorpha HOM05D000059 ORTHO05D254566 1.8e-13 80.5 215 25.6
Mapoly0004s0223 Marchantia polymorpha HOM05D011060 ORTHO05D256408 5.2e-13 79.0 218 27.5
Mapoly0124s0036 Marchantia polymorpha HOM05D011060 ORTHO05D256771 7.5e-12 75.1 221 26.7
Mapoly0089s0063 Marchantia polymorpha HOM05D011060 ORTHO05D255291 3.7e-11 72.8 219 25.1
Mapoly0004s0226 Marchantia polymorpha HOM05D011060 ORTHO05D251217 4.9e-11 72.4 215 25.6
Lalb_Chr01g0009091 Lupinus albus HOM05D000059 ORTHO05D005093 6.3e-11 72.0 211 28.0
Mapoly0004s0262 Marchantia polymorpha HOM05D000059 ORTHO05D256174 6.3e-11 72.0 223 23.8
Mapoly0004s0257 Marchantia polymorpha HOM05D000059 ORTHO05D252648 8.3e-11 71.6 225 24.9
DCAR_002319 Daucus carota HOM05D000059 ORTHO05D002665 1.4e-10 70.9 236 26.7
Atru.chr9.1534 Acer truncatum HOM05D000059 ORTHO05D005093 2.4e-10 70.1 208 28.8
MCO09G183 Micromonas commoda HOM05D000059 ORTHO05D269278 4.1e-10 69.3 128 32.8
Sc13g0008370 Simmondsia chinensis HOM05D000059 ORTHO05D005093 5.4e-10 68.9 213 27.7
THA.LOC104825260 Tarenaya hassleriana HOM05D000059 ORTHO05D005093 9.2e-10 68.2 232 27.6
TPR.G17404 Trifolium pratense HOM05D000059 ORTHO05D005093 9.2e-10 68.2 206 27.2
Ca_10802_v3 Cicer arietinum L. HOM05D000059 ORTHO05D005093 1.6e-09 67.4 206 27.7
Mapoly0042s0002 Marchantia polymorpha HOM05D000059 ORTHO05D256968 1.6e-09 67.4 230 25.2
Medtr1g101630 Medicago truncatula HOM05D000059 ORTHO05D005093 2.0e-09 67.0 206 27.2
Ciclev10005624m.g Citrus clementina HOM05D000059 ORTHO05D002665 2.7e-09 66.6 236 23.3
vmacro06749 Vaccinium macrocarpon HOM05D000059 ORTHO05D005093 3.5e-09 66.2 213 26.8
BcaB08g34263 Brassica carinata HOM05D000059 ORTHO05D005093 4.5e-09 65.9 232 28.0
AUR62016041 Chenopodium quinoa HOM05D000059 ORTHO05D005093 4.5e-09 65.9 232 25.9
FAN06G1461 Fragaria x ananassa HOM05D000059 ORTHO05D005093 4.5e-09 65.9 211 26.5
BcaC05g30189 Brassica carinata HOM05D000059 ORTHO05D002665 5.9e-09 65.5 227 25.6
A08p32760 Brassica napus HOM05D000059 ORTHO05D005093 5.9e-09 65.5 235 28.1
C08p15520 Brassica napus HOM05D000059 ORTHO05D005093 5.9e-09 65.5 235 28.1
BolC8t49180H Brassica oleracea HOM05D000059 ORTHO05D005093 5.9e-09 65.5 235 28.1
BraA08t35199Z Brassica rapa HOM05D000059 ORTHO05D005093 5.9e-09 65.5 235 28.1
CSS0012307 Camellia sinensis var. sinensis HOM05D000059 ORTHO05D005093 7.8e-09 65.1 213 26.3
CSS0015697 Camellia sinensis var. sinensis HOM05D000059 ORTHO05D005093 7.8e-09 65.1 213 26.3
Eucgr.H03060 Eucalyptus grandis HOM05D000059 ORTHO05D002665 7.8e-09 65.1 233 24.0
FvH4_7g28910 Fragaria vesca HOM05D000059 ORTHO05D005093 7.8e-09 65.1 211 26.5
Manes.01G068100 Manihot esculenta HOM05D000059 ORTHO05D005093 7.8e-09 65.1 212 26.9
RcHm_v2.0_Chr1g0376571 Rosa chinensis HOM05D000059 ORTHO05D005093 7.8e-09 65.1 210 26.7
Ah.01g001600 Amaranthus hybridus HOM05D000083 ORTHO05D003582 1.0e-08 64.7 203 24.6
Cre10.g457700 Chlamydomonas reinhardtii HOM05D000059 ORTHO05D015868 1.0e-08 64.7 219 26.9
Oeu059055.1 Olea europaea HOM05D000059 ORTHO05D005093 1.0e-08 64.7 215 25.1
THA.LOC104823765 Tarenaya hassleriana HOM05D000059 ORTHO05D002665 1.0e-08 64.7 232 25.0
Carub.0003s0369 Capsella rubella HOM05D000059 ORTHO05D002665 1.3e-08 64.3 213 24.4
Ciclev10024228m.g Citrus clementina HOM05D000059 ORTHO05D005093 1.3e-08 64.3 209 26.8
MD01G1195700 Malus domestica HOM05D000059 ORTHO05D005093 1.3e-08 64.3 213 26.3
FAN02G2025 Fragaria x ananassa HOM05D000059 ORTHO05D002665 1.7e-08 63.9 218 24.8
FAN03G1635 Fragaria x ananassa HOM05D000059 ORTHO05D005093 1.7e-08 63.9 211 26.5
Aqoxy7G03614 Aquilegia oxysepala HOM05D000083 ORTHO05D003582 2.3e-08 63.5 203 25.1
CANSAT21G1501 Cannabis sativa HOM05D000059 ORTHO05D005093 2.3e-08 63.5 210 27.1
MELO3C005625.2 Cucumis melo HOM05D000059 ORTHO05D005093 2.3e-08 63.5 208 26.4
Dinv39016 Davidia involucrata HOM05D000059 ORTHO05D005093 2.3e-08 63.5 210 27.1
FvH4_6g02090 Fragaria vesca HOM05D000059 ORTHO05D002665 2.3e-08 63.5 218 24.8
FAN03G3394 Fragaria x ananassa HOM05D000059 ORTHO05D005093 2.3e-08 63.5 211 26.5
FAN05G3288 Fragaria x ananassa HOM05D000059 ORTHO05D002665 2.3e-08 63.5 218 24.8
FAN05G4550 Fragaria x ananassa HOM05D000059 ORTHO05D002665 2.3e-08 63.5 218 24.8
Lj6P619T61 Lonicera japonica HOM05D000059 ORTHO05D002665 2.3e-08 63.5 213 25.8
MD07G1262500 Malus domestica HOM05D000059 ORTHO05D005093 2.3e-08 63.5 213 26.3
Aqoxy7G00470 Aquilegia oxysepala HOM05D000059 ORTHO05D005093 2.9e-08 63.2 206 27.2
ClCG01G003180 Citrullus lanatus HOM05D000059 ORTHO05D005093 2.9e-08 63.2 233 26.2
FAN10G2932 Fragaria x ananassa HOM05D000059 ORTHO05D005093 2.9e-08 63.2 211 26.5
Lj2g0024510 Lotus japonicus HOM05D000059 ORTHO05D005093 2.9e-08 63.2 206 26.2
Actinidia32906 Actinidia chinensis HOM05D000059 ORTHO05D005093 3.8e-08 62.8 213 26.8
Lalb_Chr06g0160951 Lupinus albus HOM05D000059 ORTHO05D005093 3.8e-08 62.8 206 26.2
COL.COLO4_08995 Corchorus olitorius HOM05D000083 ORTHO05D003582 5.0e-08 62.4 203 25.1
FAN01G2691 Fragaria x ananassa HOM05D000059 ORTHO05D005093 5.0e-08 62.4 213 26.8
FAN14G0007 Fragaria x ananassa HOM05D000059 ORTHO05D002665 5.0e-08 62.4 218 24.8
Psat6g201480 Pisum sativum HOM05D000059 ORTHO05D005093 5.0e-08 62.4 206 26.2
Aa31LG1G2070 Aethionema arabicum HOM05D000059 ORTHO05D005093 6.6e-08 62.0 232 28.9
AL1G23930 Arabidopsis lyrata HOM05D000059 ORTHO05D005093 6.6e-08 62.0 232 27.6
Cfa006339 Carpinus fangiana HOM05D000059 ORTHO05D002665 6.6e-08 62.0 219 26.0
CDE10G0356 Ceratophyllum demersum HOM05D000936 ORTHO05D001411 6.6e-08 62.0 212 24.5
FAN14G2700 Fragaria x ananassa HOM05D000059 ORTHO05D002665 6.6e-08 62.0 218 24.8
Lalb_Chr19g0131091 Lupinus albus HOM05D000059 ORTHO05D005093 6.6e-08 62.0 210 26.7
Mapoly0050s0066 Marchantia polymorpha HOM05D011060 ORTHO05D256744 6.6e-08 62.0 221 25.3
Sp1g11180 Schrenkiella parvula HOM05D000059 ORTHO05D005093 6.6e-08 62.0 232 28.0
THA.LOC104823764 Tarenaya hassleriana HOM05D000059 ORTHO05D002665 6.6e-08 62.0 233 25.3
Actinidia34072 Actinidia chinensis HOM05D000059 ORTHO05D005093 8.6e-08 61.6 213 26.8
Ah.13g067920 Amaranthus hybridus HOM05D000059 ORTHO05D005093 8.6e-08 61.6 205 26.3
BcaC07g41691 Brassica carinata HOM05D000059 ORTHO05D005093 8.6e-08 61.6 232 28.0
C08p47260 Brassica napus HOM05D000059 ORTHO05D005093 8.6e-08 61.6 232 28.0
BolC8t52267H Brassica oleracea HOM05D000059 ORTHO05D005093 8.6e-08 61.6 232 28.0
COL.COLO4_15467 Corchorus olitorius HOM05D000059 ORTHO05D002665 8.6e-08 61.6 209 23.4
FvH4_6g08930 Fragaria vesca HOM05D000059 ORTHO05D002665 8.6e-08 61.6 218 24.8
FAN02G3831 Fragaria x ananassa HOM05D000059 ORTHO05D002665 8.6e-08 61.6 218 25.2
Gorai.011G173700 Gossypium raimondii HOM05D000059 ORTHO05D002665 8.6e-08 61.6 217 24.0
Manes.08G138300 Manihot esculenta HOM05D000059 ORTHO05D002665 8.6e-08 61.6 221 25.3
Oeu030134.1 Olea europaea HOM05D000059 ORTHO05D005093 8.6e-08 61.6 209 27.3
Prupe.2G289000 Prunus persica HOM05D000059 ORTHO05D005093 8.6e-08 61.6 210 25.7
THA.LOC104821293 Tarenaya hassleriana HOM05D000059 ORTHO05D002665 8.6e-08 61.6 234 24.8
Thecc.03G270500 Theobroma cacao HOM05D000059 ORTHO05D005093 8.6e-08 61.6 213 26.8
BcaC05g29934 Brassica carinata HOM05D000059 ORTHO05D002665 1.1e-07 61.2 230 24.8
A05p42940 Brassica napus HOM05D000059 ORTHO05D002665 1.1e-07 61.2 248 23.8
C05p62720 Brassica napus HOM05D000059 ORTHO05D002665 1.1e-07 61.2 230 24.8
BolC5t34925H Brassica oleracea HOM05D000059 ORTHO05D002665 1.1e-07 61.2 230 24.8
Ciclev10030510m.g Citrus clementina HOM05D000083 ORTHO05D003582 1.1e-07 61.2 203 24.6
CsaV3_5G003290 Cucumis sativus L. HOM05D000059 ORTHO05D005093 1.1e-07 61.2 208 26.4
Thhalv10007365m.g Eutrema salsugineum HOM05D000059 ORTHO05D005093 1.1e-07 61.2 231 27.7
FAN05G4238 Fragaria x ananassa HOM05D000059 ORTHO05D002665 1.1e-07 61.2 218 24.8
FAN14G5672 Fragaria x ananassa HOM05D000059 ORTHO05D002665 1.1e-07 61.2 216 26.9
Potri.003G120800 Populus trichocarpa HOM05D000059 ORTHO05D005093 1.1e-07 61.2 207 27.1
A09p63760 Brassica napus HOM05D000059 ORTHO05D005093 1.5e-07 60.8 232 27.6
BraA09t41724Z Brassica rapa HOM05D000059 ORTHO05D005093 1.5e-07 60.8 232 27.6
Lsat_1_v5_gn_2_130620 Lactuca sativa HOM05D000059 ORTHO05D005093 1.5e-07 60.8 213 25.8
Mapoly0004s0224 Marchantia polymorpha HOM05D011060 ORTHO05D252928 1.5e-07 60.8 217 25.3
Nn1g01327 Nelumbo nucifera HOM05D000059 ORTHO05D005093 1.5e-07 60.8 210 26.2
Potri.012G134600 Populus trichocarpa HOM05D000059 ORTHO05D005093 1.5e-07 60.8 230 26.1
BcaB03g13180 Brassica carinata HOM05D000059 ORTHO05D005093 1.9e-07 60.5 232 27.2
FAN09G2980 Fragaria x ananassa HOM05D000059 ORTHO05D002665 1.9e-07 60.5 218 24.3
Gohir.D10G155600 Gossypium hirsutum HOM05D000059 ORTHO05D002665 1.9e-07 60.5 217 23.5
RcHm_v2.0_Chr3g0449921 Rosa chinensis HOM05D000059 ORTHO05D002665 1.9e-07 60.5 217 25.8
THA.LOC104799247 Tarenaya hassleriana HOM05D000059 ORTHO05D002665 1.9e-07 60.5 214 23.8
Thhalv10021288m.g Eutrema salsugineum HOM05D000059 ORTHO05D002665 2.5e-07 60.1 218 23.4
Lj1g0017066 Lotus japonicus HOM05D000055 ORTHO05D000057 2.5e-07 60.1 200 28.0
Rhsim05G0175200 Rhododendron simsii HOM05D000059 ORTHO05D002665 2.5e-07 60.1 238 23.5
PGSC0003DMG400016291 Solanum tuberosum HOM05D000059 ORTHO05D002665 2.5e-07 60.1 237 25.3
Medtr6g012980 Medicago truncatula HOM05D000055 ORTHO05D002202 3.3e-07 59.7 207 27.1
Potri.015G136900 Populus trichocarpa HOM05D000059 ORTHO05D005093 3.3e-07 59.7 213 25.8
BraA05t23039Z Brassica rapa HOM05D000059 ORTHO05D002665 4.3e-07 59.3 248 23.4
Haze_04441 Corylus avellana HOM05D000059 ORTHO05D002665 4.3e-07 59.3 219 26.0
Eucgr.H03059 Eucalyptus grandis HOM05D000059 ORTHO05D002665 4.3e-07 59.3 236 22.5
AL3G14550 Arabidopsis lyrata HOM05D000059 ORTHO05D002665 5.6e-07 58.9 224 27.7
Cfa006338 Carpinus fangiana HOM05D000059 ORTHO05D002665 5.6e-07 58.9 219 26.0
Duzib084G0540 Durio zibethinus HOM05D000059 ORTHO05D005093 5.6e-07 58.9 206 26.7
Rhsim03G0176100 Rhododendron simsii HOM05D000059 ORTHO05D005093 5.6e-07 58.9 109 32.1
Sopen03g005230 Solanum pennellii HOM05D000059 ORTHO05D005093 5.6e-07 58.9 214 27.1
arahy.Tifrunner.gnm1.ann1.C57X19 Arachis hypogaea HOM05D000059 ORTHO05D005093 7.3e-07 58.5 211 26.1
Hma1.2p1_0099F.1_g048640 Hydrangea macrophylla HOM05D000059 ORTHO05D005093 7.3e-07 58.5 213 24.9
Mapoly0004s0219 Marchantia polymorpha HOM05D011060 ORTHO05D253232 7.3e-07 58.5 224 23.7
Peaxi162Scf00740g00562 Petunia axillaris HOM05D000591 ORTHO05D000579 7.3e-07 58.5 211 27.0
Sabra15G0148500 Salix brachista HOM05D000059 ORTHO05D005093 7.3e-07 58.5 234 25.6
THA.LOC104806631 Tarenaya hassleriana HOM05D000137 ORTHO05D000382 7.3e-07 58.5 234 23.9
TWI81G0452 Tripterygium wilfordii HOM05D000059 ORTHO05D005093 7.3e-07 58.5 209 25.8
AT3G04530 Arabidopsis thaliana HOM05D000059 ORTHO05D002665 9.5e-07 58.2 222 25.7
Glyma.10G186000 Glycine max HOM05D000059 ORTHO05D002665 9.5e-07 58.2 225 25.3
SMO198G0032 Selaginella moellendorffii HOM05D000083 ORTHO05D003582 9.5e-07 58.2 187 27.3
Solyc03g026340.4 Solanum lycopersicum HOM05D000059 ORTHO05D005093 9.5e-07 58.2 214 27.1
PGR090G0002 Punica granatum HOM05D004536 ORTHO05D005628 1.2e-06 57.8 114 32.5
PGR119G2278 Punica granatum HOM05D004536 ORTHO05D005628 1.2e-06 57.8 114 32.5
Thecc.04G254600 Theobroma cacao HOM05D000059 ORTHO05D002665 1.2e-06 57.8 217 23.5
Cpa.g.sc29.10 Carica papaya HOM05D000059 ORTHO05D005093 1.6e-06 57.4 212 26.4
Lj1C990G2 Lonicera japonica HOM05D000059 ORTHO05D005093 1.6e-06 57.4 209 25.4
Manes.03G164500 Manihot esculenta HOM05D000059 ORTHO05D002665 1.6e-06 57.4 237 21.9
Prupe.5G089500 Prunus persica HOM05D000059 ORTHO05D005093 1.6e-06 57.4 231 26.0
Hund06915 Selenicereus undatus HOM05D000059 ORTHO05D002665 1.6e-06 57.4 230 23.9
GSVIVG01019868001 Vitis vinifera HOM05D000059 ORTHO05D005093 1.6e-06 57.4 210 25.2
DCAR_005676 Daucus carota HOM05D000059 ORTHO05D005093 2.1e-06 57.0 121 33.1
Gohir.D09G187500 Gossypium hirsutum HOM05D000059 ORTHO05D005093 2.1e-06 57.0 109 31.2
Gorai.006G210300 Gossypium raimondii HOM05D000059 ORTHO05D005093 2.1e-06 57.0 109 31.2
Potri.008G166500 Populus trichocarpa HOM05D000059 ORTHO05D002665 2.1e-06 57.0 91 31.9
CANSAT64G1228 Cannabis sativa HOM05D000055 ORTHO05D002202 2.8e-06 56.6 114 31.6
Ciclev10004741m.g Citrus clementina HOM05D000059 ORTHO05D005093 2.8e-06 56.6 218 26.6
COL.COLO4_05279 Corchorus olitorius HOM05D000059 ORTHO05D005093 2.8e-06 56.6 109 31.2
MCO11G405 Micromonas commoda HOM05D000059 ORTHO05D000128 2.8e-06 56.6 241 25.7
Aa31LG1G25500 Aethionema arabicum HOM05D000137 ORTHO05D000382 3.6e-06 56.2 234 23.5
Aa31sc110G40 Aethionema arabicum HOM05D000059 ORTHO05D002665 3.6e-06 56.2 232 23.7
BcaC02g12363 Brassica carinata HOM05D000137 ORTHO05D000382 3.6e-06 56.2 234 23.5
C04p04740 Brassica napus HOM05D000137 ORTHO05D000382 3.6e-06 56.2 234 23.5
BolC4t22104H Brassica oleracea HOM05D000137 ORTHO05D000382 3.6e-06 56.2 234 23.5
BraA05t19387Z Brassica rapa HOM05D000137 ORTHO05D000382 3.6e-06 56.2 234 23.5
Cre16.g665364 Chlamydomonas reinhardtii HOM05D000059 ORTHO05D015868 3.6e-06 56.2 99 35.4
Cc08_g13920 Coffea canephora HOM05D000059 ORTHO05D005093 3.6e-06 56.2 100 32.0
Mapoly0038s0082 Marchantia polymorpha HOM05D000055 ORTHO05D002202 3.6e-06 56.2 119 30.3
GSVIVG01027804001 Vitis vinifera HOM05D000059 ORTHO05D002665 3.6e-06 56.2 238 25.2
AUR62002420 Chenopodium quinoa HOM05D000137 ORTHO05D000382 4.7e-06 55.8 234 23.9
AUR62023768 Chenopodium quinoa HOM05D000137 ORTHO05D000382 4.7e-06 55.8 234 23.9
Mapoly0156s0001 Marchantia polymorpha HOM05D011060 ORTHO05D251813 4.7e-06 55.8 218 25.2
MCO01G596 Micromonas commoda HOM05D000059 ORTHO05D015868 4.7e-06 55.8 144 31.2
VMungo0720G1281 Vigna mungo HOM05D000059 ORTHO05D002665 4.7e-06 55.8 119 29.4
EL10Ac4g09069 Beta vulgaris HOM05D000059 ORTHO05D002665 6.1e-06 55.5 221 23.5
BcaB02g08901 Brassica carinata HOM05D000137 ORTHO05D000382 6.1e-06 55.5 234 23.5
BcaC07g38410 Brassica carinata HOM05D000059 ORTHO05D002665 6.1e-06 55.5 231 25.1
A05p03990 Brassica napus HOM05D000137 ORTHO05D000382 6.1e-06 55.5 234 23.5
C08p11710 Brassica napus HOM05D000059 ORTHO05D002665 6.1e-06 55.5 231 25.1
BolC8t48846H Brassica oleracea HOM05D000059 ORTHO05D002665 6.1e-06 55.5 231 25.1
MELO3C006426.2 Cucumis melo HOM05D000059 ORTHO05D002665 6.1e-06 55.5 233 19.7
ECA246G3963 Erigeron canadensis HOM05D000055 ORTHO05D002202 6.1e-06 55.5 215 27.9
Lj2g0018663 Lotus japonicus HOM05D000055 ORTHO05D002202 6.1e-06 55.5 75 36.0
Manes.05G132100 Manihot esculenta HOM05D000137 ORTHO05D000382 6.1e-06 55.5 217 24.9
HPP92_027561 Vanilla planifolia HOM05D000434 ORTHO05D004273 6.1e-06 55.5 118 29.7
Ah.07g202970 Amaranthus hybridus HOM05D000137 ORTHO05D000382 8.0e-06 55.1 237 24.1
Carub.0007s3649 Capsella rubella HOM05D000055 ORTHO05D002202 8.0e-06 55.1 208 26.4
Manes.09G148600 Manihot esculenta HOM05D000059 ORTHO05D002665 8.0e-06 55.1 81 35.8
Thecc.03G169400 Theobroma cacao HOM05D000059 ORTHO05D005093 8.0e-06 55.1 231 26.4


User provided reference genes

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