Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0031s0110 Marchantia polymorpha HOM05D006660 ORTHO05D008184 0.0e+00 1293.1 650 100.0
Pp3c5_19510 Physcomitrium patens HOM05D006660 ORTHO05D008184 1.7e-189 666.8 633 57.3
Pp3c5_19514 Physcomitrium patens HOM05D006660 ORTHO05D008184 1.7e-189 666.8 633 57.3
SEGI_29705 Sequoiadendron giganteum HOM05D006660 ORTHO05D008184 1.7e-189 666.8 666 56.0
Manes.12G060700 Manihot esculenta HOM05D006660 ORTHO05D008184 9.2e-183 644.4 643 55.2
Solyc07g049590.3 Solanum lycopersicum HOM05D006660 ORTHO05D008184 2.0e-182 643.3 643 54.7
Nitab4.5_0000130g0170 Nicotiana tabacum HOM05D006660 ORTHO05D008184 3.5e-182 642.5 633 56.1
Thecc.01G186300 Theobroma cacao HOM05D006660 ORTHO05D008184 4.6e-182 642.1 637 55.3
Nitab4.5_0008746g0020 Nicotiana tabacum HOM05D006660 ORTHO05D008184 3.9e-181 639.0 631 55.9
Rhsim04G0045800 Rhododendron simsii HOM05D006660 ORTHO05D008184 3.9e-181 639.0 629 56.3
Sopen07g024990 Solanum pennellii HOM05D006660 ORTHO05D008184 3.9e-181 639.0 630 55.1
Prupe.3G205300 Prunus persica HOM05D006660 ORTHO05D008184 5.0e-181 638.6 628 55.1
Eucgr.K00713 Eucalyptus grandis HOM05D006660 ORTHO05D008184 1.1e-180 637.5 639 54.0
PGSC0003DMG400006428 Solanum tuberosum HOM05D006660 ORTHO05D008184 1.9e-180 636.7 643 54.4
CAN.G784.8 Capsicum annuum HOM05D006660 ORTHO05D008184 3.3e-180 636.0 638 54.4
PGR142G4370 Punica granatum HOM05D006660 ORTHO05D008184 5.6e-180 635.2 628 55.1
TWI36G0095 Tripterygium wilfordii HOM05D006660 ORTHO05D008184 3.6e-179 632.5 635 55.1
FAN02G1797 Fragaria x ananassa HOM05D006660 ORTHO05D008184 4.7e-179 632.1 637 53.8
THA.LOC104808860 Tarenaya hassleriana HOM05D006660 ORTHO05D008184 6.2e-179 631.7 634 54.1
CSS0034515 Camellia sinensis var. sinensis HOM05D006660 ORTHO05D008184 8.0e-179 631.3 637 54.6
HPP92_017850 Vanilla planifolia HOM05D006660 ORTHO05D008184 1.8e-178 630.2 638 53.8
FAN14G2696 Fragaria x ananassa HOM05D006660 ORTHO05D008184 8.9e-178 627.9 636 53.9
FAN14G4026 Fragaria x ananassa HOM05D006660 ORTHO05D008184 8.9e-178 627.9 636 53.9
RcHm_v2.0_Chr2g0157231 Rosa chinensis HOM05D006660 ORTHO05D008184 8.9e-178 627.9 636 53.5
Cc10_g08860 Coffea canephora HOM05D006660 ORTHO05D008184 1.2e-177 627.5 624 55.1
FAN05G5067 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.2e-177 627.5 637 53.8
FvH4_6g41550 Fragaria vesca HOM05D006660 ORTHO05D008184 3.4e-177 625.9 636 53.8
Gorai.001G097700 Gossypium raimondii HOM05D006660 ORTHO05D008184 4.4e-177 625.5 624 54.3
DCAR_019721 Daucus carota HOM05D006660 ORTHO05D008184 9.8e-177 624.4 626 54.8
Peaxi162Scf01333g00136 Petunia axillaris HOM05D006660 ORTHO05D008184 1.7e-176 623.6 611 55.8
Nn1g07385 Nelumbo nucifera HOM05D006660 ORTHO05D008184 2.9e-176 622.9 627 55.7
MSTRG.14936 Avicennia marina HOM05D006660 ORTHO05D008184 3.7e-176 622.5 616 56.0
Sc20g0003860 Simmondsia chinensis HOM05D006660 ORTHO05D008184 6.4e-176 621.7 626 54.6
Atru.chr6.3323 Acer truncatum HOM05D006660 ORTHO05D008184 8.3e-176 621.3 642 54.0
Actinidia10783 Actinidia chinensis HOM05D006660 ORTHO05D008184 8.3e-176 621.3 629 54.5
arahy.Tifrunner.gnm1.ann1.V90YU5 Arachis hypogaea HOM05D006660 ORTHO05D008184 1.1e-175 620.9 623 53.9
Thhalv10002462m.g Eutrema salsugineum HOM05D006660 ORTHO05D008184 1.4e-175 620.5 635 53.2
AUR62015095 Chenopodium quinoa HOM05D006660 ORTHO05D008184 2.4e-175 619.8 628 54.6
arahy.Tifrunner.gnm1.ann1.7S53TL Arachis hypogaea HOM05D006660 ORTHO05D008184 4.1e-175 619.0 623 53.8
arahy.Tifrunner.gnm1.ann1.GN08CG Arachis hypogaea HOM05D006660 ORTHO05D008184 4.1e-175 619.0 623 53.8
Potri.014G163200 Populus trichocarpa HOM05D006660 ORTHO05D008184 9.2e-175 617.8 625 53.1
Ca_16352_v3 Cicer arietinum L. HOM05D006660 ORTHO05D008184 1.2e-174 617.5 622 54.2
ClCG02G009540 Citrullus lanatus HOM05D006660 ORTHO05D008184 1.2e-174 617.5 649 53.2
TAR626G1025 Trochodendron aralioides HOM05D006660 ORTHO05D008184 1.6e-174 617.1 628 54.5
CANSAT64G1453 Cannabis sativa HOM05D006660 ORTHO05D008184 2.1e-174 616.7 634 53.2
Sabra14G0124600 Salix brachista HOM05D006660 ORTHO05D008184 2.7e-174 616.3 625 53.6
Sed0019714 Sechium edule HOM05D006660 ORTHO05D008184 3.5e-174 615.9 633 53.6
Carub.0003s2635 Capsella rubella HOM05D006660 ORTHO05D008184 1.3e-173 614.0 641 52.6
PSO675G7408 Papaver somniferum HOM05D006660 ORTHO05D008184 1.3e-173 614.0 634 52.4
EL10Ac3g05658 Beta vulgaris HOM05D006660 ORTHO05D008184 3.9e-173 612.5 627 53.9
HanXRQChr10g0306331 Helianthus annuus HOM05D006660 ORTHO05D008184 3.9e-173 612.5 624 53.7
Aqoxy1G02841 Aquilegia oxysepala HOM05D006660 ORTHO05D008184 5.1e-173 612.1 660 52.0
MELO3C019360.2 Cucumis melo HOM05D006660 ORTHO05D008184 6.6e-173 611.7 633 52.9
Medtr3g082870 Medicago truncatula HOM05D006660 ORTHO05D008184 6.6e-173 611.7 617 53.5
PSO541G2904 Papaver somniferum HOM05D006660 ORTHO05D008184 6.6e-173 611.7 634 51.9
AL3G42350 Arabidopsis lyrata HOM05D006660 ORTHO05D008184 1.9e-172 610.1 636 52.4
CsaV3_2G034260 Cucumis sativus L. HOM05D006660 ORTHO05D008184 1.9e-172 610.1 629 53.3
Aa31sc53G10 Aethionema arabicum HOM05D006660 ORTHO05D008184 4.3e-172 609.0 636 52.5
Ciclev10014722m.g Citrus clementina HOM05D006660 ORTHO05D008184 4.3e-172 609.0 628 51.9
TPR.G22464 Trifolium pratense HOM05D006660 ORTHO05D008184 9.5e-172 607.8 609 53.5
Lsat_1_v5_gn_5_124741 Lactuca sativa HOM05D006660 ORTHO05D008184 1.6e-171 607.1 617 54.3
CARHR102690 Cardamine hirsuta HOM05D006660 ORTHO05D008184 3.6e-171 605.9 630 52.9
AT2G04740 Arabidopsis thaliana HOM05D006660 ORTHO05D008184 6.2e-171 605.1 634 52.1
Duzib133G0254 Durio zibethinus HOM05D006660 ORTHO05D008184 1.8e-170 603.6 627 52.6
SGA_v2.0_scaffold73G24530 Striga asiatica HOM05D006660 ORTHO05D008184 3.1e-170 602.8 624 53.7
Lj6g0000837 Lotus japonicus HOM05D006660 ORTHO05D008184 8.9e-170 601.3 619 52.5
Sp3g23370 Schrenkiella parvula HOM05D006660 ORTHO05D008184 8.9e-170 601.3 634 51.9
Psat5g103920 Pisum sativum HOM05D006660 ORTHO05D008184 2.6e-169 599.7 659 50.8
BcaC01g03192 Brassica carinata HOM05D006660 ORTHO05D008184 1.7e-168 597.0 635 51.7
Glyma.20G057100 Glycine max HOM05D006660 ORTHO05D008184 2.2e-168 596.7 609 53.9
BolC3t17779H Brassica oleracea HOM05D006660 ORTHO05D008184 3.7e-168 595.9 635 51.5
Zm00001eb281240 Zea mays HOM05D006660 ORTHO05D008184 4.9e-168 595.5 632 52.4
A03p44410 Brassica napus HOM05D006660 ORTHO05D008184 8.3e-168 594.7 635 51.3
C03p55040 Brassica napus HOM05D006660 ORTHO05D008184 1.4e-167 594.0 635 51.5
Migut.M00006 Erythranthe guttata HOM05D006660 ORTHO05D008184 1.9e-167 593.6 624 53.5
BraA03t13574Z Brassica rapa HOM05D006660 ORTHO05D008184 2.4e-167 593.2 635 51.3
MBI16_g31717_MAGBIO Magnolia biondii HOM05D006660 ORTHO05D008184 5.4e-167 592.0 625 53.1
BcaB08g34485 Brassica carinata HOM05D006660 ORTHO05D008184 7.1e-167 591.7 637 51.6
AUR62017555 Chenopodium quinoa HOM05D006660 ORTHO05D008184 3.3e-164 582.8 671 50.5
Gohir.A07G086100 Gossypium hirsutum HOM05D006660 ORTHO05D008184 3.6e-163 579.3 624 51.8
Os06g0318200 Oryza sativa ssp. japonica HOM05D006660 ORTHO05D008184 8.1e-163 578.2 616 51.9
Ah.14g082930 Amaranthus hybridus HOM05D006660 ORTHO05D008184 6.4e-160 568.5 619 51.9
FAN09G0285 Fragaria x ananassa HOM05D006660 ORTHO05D008184 3.9e-157 559.3 629 50.4
COL.COLO4_35986 Corchorus olitorius HOM05D006660 ORTHO05D008184 6.0e-150 535.4 638 48.0
Haze_12725 Corylus avellana HOM05D006660 ORTHO05D008184 1.9e-148 530.4 526 55.1
ECA234G1491 Erigeron canadensis HOM05D006660 ORTHO05D008184 3.3e-148 529.6 626 49.5
CiPaw.04G193900 Carya illinoinensis HOM05D006660 ORTHO05D008184 8.1e-147 525.0 521 54.3
SMO353G0185 Selaginella moellendorffii HOM05D006660 ORTHO05D008184 3.2e-135 486.5 608 46.2
AagrBONN_evm.TU.Sc2ySwM_344.2917 Anthoceros agrestis HOM05D006660 ORTHO05D008184 5.7e-132 475.7 621 46.2
Cpa.g.sc132.76 Carica papaya HOM05D006660 ORTHO05D008184 5.7e-132 475.7 525 49.9
vmacro09381 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 4.3e-124 449.5 461 54.2
Lalb_Chr24g0402731 Lupinus albus HOM05D006660 ORTHO05D008184 7.4e-124 448.7 480 51.5
ATR0712G111 Amborella trichopoda HOM05D006660 ORTHO05D008184 2.0e-121 440.7 462 53.0
CBR_g47999 Chara braunii HOM05D006660 ORTHO05D008184 1.4e-119 434.5 680 41.2
VMungo1309G1541 Vigna mungo HOM05D006660 ORTHO05D008184 1.6e-118 431.0 465 50.3
CDE07G0400 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 2.7e-118 430.3 459 51.6
Dinv07831 Davidia involucrata HOM05D006660 ORTHO05D008184 4.6e-118 429.5 464 51.5
Gohir.D07G091200 Gossypium hirsutum HOM05D006660 ORTHO05D008184 6.7e-117 425.6 473 49.7
Oeu040482.1 Olea europaea HOM05D006660 ORTHO05D008184 1.7e-112 411.0 461 50.5
MD17G1109800 Malus domestica HOM05D006660 ORTHO05D008184 1.1e-108 398.3 639 40.1
Atru.chr6.3318 Acer truncatum HOM05D006660 ORTHO05D008184 5.0e-104 382.9 464 47.6
Lj8A132T54 Lonicera japonica HOM05D006660 ORTHO05D008184 2.0e-100 370.9 315 60.0
GSVIVG01030415001 Vitis vinifera HOM05D006660 ORTHO05D008184 4.1e-98 363.2 319 58.6
Hund08409 Selenicereus undatus HOM05D006660 ORTHO05D008184 2.8e-83 313.9 370 47.8
AagrBONN_evm.TU.Sc2ySwM_228.2541 Anthoceros agrestis HOM05D006660 ORTHO05D008184 2.7e-73 280.8 471 39.5
Lj8C132T7 Lonicera japonica HOM05D006660 ORTHO05D008184 4.6e-73 280.0 239 61.9
GSVIVG01030416001 Vitis vinifera HOM05D006660 ORTHO05D008184 3.0e-64 250.8 184 67.4
Oeu040483.1 Olea europaea HOM05D006660 ORTHO05D008184 5.1e-56 223.4 164 69.5
CDE04G2012 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 3.5e-49 200.7 607 28.7
ATR0712G102 Amborella trichopoda HOM05D006660 ORTHO05D008184 4.6e-49 200.3 139 69.1
CDE07G1994 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.6e-46 191.8 143 63.6
Phvul.004G085870 Phaseolus vulgaris HOM05D006660 ORTHO05D008184 5.8e-44 183.3 111 78.4
VMungo1309G0792 Vigna mungo HOM05D006660 ORTHO05D008184 5.8e-44 183.3 111 77.5
Lalb_Chr24g0402711 Lupinus albus HOM05D006660 ORTHO05D008184 2.2e-35 154.8 104 71.2
Atru.chr6.3319 Acer truncatum HOM05D006660 ORTHO05D008184 1.0e-32 146.0 160 51.9
Cpa.g.sc987.1 Carica papaya HOM05D006660 ORTHO05D008184 3.5e-25 120.9 105 59.0
HanXRQChr08g0218831 Helianthus annuus HOM05D006660 ORTHO05D008184 2.1e-22 111.7 66 72.7
vmacro09380 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 5.3e-21 107.1 87 64.4
CDE04G2605 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.3e-14 85.9 89 50.6
Cfa027280 Carpinus fangiana HOM05D006660 ORTHO05D008184 1.7e-11 75.5 219 28.8
Os10g0435900 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 2.3e-08 65.1 170 31.8
Os10g0434999 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 3.9e-08 64.3 170 31.8
Os08g0523850 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D008184 5.1e-08 63.9 177 29.9
Os10g0434200 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 3.3e-07 61.2 167 28.7
Os11g0619800 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 4.3e-07 60.8 148 32.4
Thhalv10020746m.g Eutrema salsugineum HOM05D000563 ORTHO05D000536 5.7e-07 60.5 232 28.0
PSO832G0159 Papaver somniferum HOM05D002203 ORTHO05D002647 5.7e-07 60.5 147 30.6
PSO210G7293 Papaver somniferum HOM05D002203 ORTHO05D002647 1.3e-06 59.3 168 28.6
A01p41380 Brassica napus HOM05D000563 ORTHO05D000536 2.2e-06 58.5 160 30.6
BNapus_Darmor_BZH_scaffold_78p00330 Brassica napus HOM05D000563 ORTHO05D000536 2.2e-06 58.5 160 30.6
Os10g0435400 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 2.2e-06 58.5 146 29.5
Os10g0434000 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 2.8e-06 58.2 171 29.2
Zm00001eb274310 Zea mays HOM05D000563 ORTHO05D000536 3.7e-06 57.8 118 34.7
CBR_g46594 Chara braunii HOM05D002203 ORTHO05D002647 4.8e-06 57.4 139 29.5
Os08g0228200 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 4.8e-06 57.4 125 31.2
Os10g0425400 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 4.8e-06 57.4 156 30.8
Zm00001eb047910 Zea mays HOM05D000563 ORTHO05D000536 4.8e-06 57.4 144 31.9
Zm00001eb418740 Zea mays HOM05D000563 ORTHO05D442000 4.8e-06 57.4 118 34.7
BraA01t04562Z Brassica rapa HOM05D000563 ORTHO05D000536 6.3e-06 57.0 160 30.6
Os08g0226400 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 6.3e-06 57.0 79 38.0
Os08g0406500 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 6.3e-06 57.0 144 29.2
Os11g0630700 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 6.3e-06 57.0 121 33.9
Zm00001eb047620 Zea mays HOM05D000563 ORTHO05D000536 8.2e-06 56.6 148 31.1


User provided reference genes

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