Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0031s0074 Marchantia polymorpha HOM05D002709 ORTHO05D002914 1.3e-174 616.3 313 100.0
Mapoly0031s0076 Marchantia polymorpha HOM05D002709 ORTHO05D002914 2.8e-113 412.5 302 73.2
Mapoly0021s0101 Marchantia polymorpha HOM05D002709 ORTHO05D002914 2.4e-19 100.5 162 38.9
Pp3c6_8660 Physcomitrium patens HOM05D002709 ORTHO05D002914 1.0e-17 95.1 199 34.7
SMO367G0040 Selaginella moellendorffii HOM05D002709 ORTHO05D002914 2.9e-17 93.6 205 32.2
Mapoly0021s0100 Marchantia polymorpha HOM05D002709 ORTHO05D002914 5.0e-17 92.8 295 28.8
Pp3c5_20560 Physcomitrium patens HOM05D002709 ORTHO05D002914 1.9e-16 90.9 271 31.7
SMO356G0362 Selaginella moellendorffii HOM05D002709 ORTHO05D002914 9.4e-16 88.6 193 33.7
CDE12G0280 Ceratophyllum demersum HOM05D002709 ORTHO05D002914 5.1e-14 82.8 181 33.7
MBI04_g21140_MAGBIO Magnolia biondii HOM05D002709 ORTHO05D002914 1.5e-13 81.3 189 31.7
SEGI_18151 Sequoiadendron giganteum HOM05D002709 ORTHO05D002914 9.7e-13 78.6 184 33.7
Nn1g02001 Nelumbo nucifera HOM05D002709 ORTHO05D002914 2.8e-12 77.0 261 29.5
Nn3g19279 Nelumbo nucifera HOM05D002709 ORTHO05D002914 4.8e-12 76.3 184 33.7
Mapoly0031s0075 Marchantia polymorpha HOM05D002709 ORTHO05D002914 1.1e-11 75.1 169 32.5
SalBow4G1996 Salvia bowleyana HOM05D002709 ORTHO05D002914 1.4e-11 74.7 171 35.1
CDE02G2384 Ceratophyllum demersum HOM05D002709 ORTHO05D002914 1.8e-11 74.3 173 32.4
SalBow4G0249 Salvia bowleyana HOM05D002709 ORTHO05D002914 2.4e-11 73.9 171 35.1
Mapoly0021s0102 Marchantia polymorpha HOM05D002709 ORTHO05D002914 6.9e-11 72.4 138 31.9
Potri.006G202100 Populus trichocarpa HOM05D002709 ORTHO05D002914 6.9e-11 72.4 175 33.7
Nitab4.5_0000050g0090 Nicotiana tabacum HOM05D002709 ORTHO05D002914 9.1e-11 72.0 180 31.1
Nitab4.5_0000592g0300 Nicotiana tabacum HOM05D002709 ORTHO05D002914 1.5e-10 71.2 306 29.4
Sed0003196 Sechium edule HOM05D002709 ORTHO05D002914 1.5e-10 71.2 188 33.0
CSS0031913 Camellia sinensis var. sinensis HOM05D002709 ORTHO05D002914 2.6e-10 70.5 170 32.4
Lj7A558T39 Lonicera japonica HOM05D002709 ORTHO05D002914 2.6e-10 70.5 178 33.7
Sabra06G0155400 Salix brachista HOM05D002709 ORTHO05D002914 2.6e-10 70.5 175 32.0
HanXRQChr11g0344001 Helianthus annuus HOM05D002709 ORTHO05D002914 7.7e-10 68.9 180 30.0
Lsat_1_v5_gn_1_85520 Lactuca sativa HOM05D002709 ORTHO05D002914 7.7e-10 68.9 194 29.4
QL04p052179 Quercus lobata HOM05D002709 ORTHO05D002914 7.7e-10 68.9 191 31.9
Atru.chr12.829 Acer truncatum HOM05D002709 ORTHO05D002914 1.0e-09 68.6 196 29.1
ATR0829G155 Amborella trichopoda HOM05D002709 ORTHO05D002914 1.3e-09 68.2 194 29.4
Oeu060684.1 Olea europaea HOM05D002709 ORTHO05D002914 1.3e-09 68.2 179 31.8
CAN.G700.27 Capsicum annuum HOM05D002709 ORTHO05D002914 1.7e-09 67.8 174 31.6
ECA248G1803 Erigeron canadensis HOM05D002709 ORTHO05D002914 1.7e-09 67.8 193 29.5
Peaxi162Scf00592g00446 Petunia axillaris HOM05D002709 ORTHO05D002914 1.7e-09 67.8 196 30.1
Atru.chr8.7 Acer truncatum HOM05D002709 ORTHO05D002914 2.2e-09 67.4 181 32.0
Ciclev10019669m.g Citrus clementina HOM05D002709 ORTHO05D002914 2.2e-09 67.4 178 32.0
Migut.N01685 Erythranthe guttata HOM05D002709 ORTHO05D002914 2.2e-09 67.4 171 32.7
Migut.N01686 Erythranthe guttata HOM05D002709 ORTHO05D002914 2.2e-09 67.4 171 33.3
Lj7A558T38 Lonicera japonica HOM05D002709 ORTHO05D002914 2.2e-09 67.4 187 29.9
TWI14G0450 Tripterygium wilfordii HOM05D002709 ORTHO05D002914 2.2e-09 67.4 173 34.7
Dinv43981 Davidia involucrata HOM05D002709 ORTHO05D002914 2.9e-09 67.0 178 33.7
Nitab4.5_0012200g0010 Nicotiana tabacum HOM05D002709 ORTHO05D002914 2.9e-09 67.0 192 30.7
Os04g0599300 Oryza sativa ssp. japonica HOM05D002709 ORTHO05D002914 2.9e-09 67.0 172 32.0
Peaxi162Scf00592g00445 Petunia axillaris HOM05D002709 ORTHO05D002914 2.9e-09 67.0 190 31.1
Prupe.2G097200 Prunus persica HOM05D002709 ORTHO05D002914 2.9e-09 67.0 196 31.6
Aqoxy3G02033 Aquilegia oxysepala HOM05D002709 ORTHO05D002914 3.8e-09 66.6 177 30.5
Cc02_g26300 Coffea canephora HOM05D002709 ORTHO05D002914 3.8e-09 66.6 173 31.8
SGA_v2.0_scaffold4G02211 Striga asiatica HOM05D002709 ORTHO05D002914 3.8e-09 66.6 181 32.6
GSVIVG01011330001 Vitis vinifera HOM05D002709 ORTHO05D002914 3.8e-09 66.6 171 33.3
ClCG06G008120 Citrullus lanatus HOM05D002709 ORTHO05D002914 5.0e-09 66.2 181 33.1
MD07G1076400 Malus domestica HOM05D002709 ORTHO05D002914 5.0e-09 66.2 177 32.2
Manes.07G013000 Manihot esculenta HOM05D002709 ORTHO05D002914 5.0e-09 66.2 178 30.3
Gohir.D06G164400 Gossypium hirsutum HOM05D002709 ORTHO05D002914 8.5e-09 65.5 192 31.8
Gorai.010G191800 Gossypium raimondii HOM05D002709 ORTHO05D002914 8.5e-09 65.5 192 31.8
Gohir.A06G158500 Gossypium hirsutum HOM05D002709 ORTHO05D002914 1.1e-08 65.1 277 28.2
Dinv43535 Davidia involucrata HOM05D002709 ORTHO05D002914 1.4e-08 64.7 183 32.2
Nitab4.5_0004594g0050 Nicotiana tabacum HOM05D002709 ORTHO05D002914 1.9e-08 64.3 193 31.1
Actinidia31749 Actinidia chinensis HOM05D002709 ORTHO05D002914 2.5e-08 63.9 170 31.2
Ca_18230_v3 Cicer arietinum L. HOM05D002709 ORTHO05D002914 2.5e-08 63.9 175 28.6
FvH4_7g07050 Fragaria vesca HOM05D002709 ORTHO05D002914 2.5e-08 63.9 310 25.8
Lsat_1_v5_gn_4_40321 Lactuca sativa HOM05D002709 ORTHO05D002914 2.5e-08 63.9 191 30.9
Nitab4.5_0004412g0070 Nicotiana tabacum HOM05D002709 ORTHO05D002914 2.5e-08 63.9 197 29.4
Oeu060682.1 Olea europaea HOM05D002709 ORTHO05D002914 2.5e-08 63.9 179 31.3
RcHm_v2.0_Chr1g0337011 Rosa chinensis HOM05D002709 ORTHO05D002914 2.5e-08 63.9 205 30.2
Zm00001eb251650 Zea mays HOM05D002709 ORTHO05D002914 2.5e-08 63.9 171 31.0
arahy.Tifrunner.gnm1.ann1.ALCT10 Arachis hypogaea HOM05D002709 ORTHO05D002914 3.2e-08 63.5 176 29.5
arahy.Tifrunner.gnm1.ann1.UPIP6Z Arachis hypogaea HOM05D002709 ORTHO05D002914 3.2e-08 63.5 176 29.5
Sabra16G0069500 Salix brachista HOM05D002709 ORTHO05D002914 3.2e-08 63.5 175 31.4
Sc26g0002000 Simmondsia chinensis HOM05D002709 ORTHO05D002914 3.2e-08 63.5 174 33.9
PGSC0003DMG400001791 Solanum tuberosum HOM05D002709 ORTHO05D002914 4.2e-08 63.2 175 30.9
vmacro13577 Vaccinium macrocarpon HOM05D002709 ORTHO05D002914 4.2e-08 63.2 180 30.6
CDE01G0783 Ceratophyllum demersum HOM05D002709 ORTHO05D002914 5.5e-08 62.8 125 36.8
COL.COLO4_19335 Corchorus olitorius HOM05D002709 ORTHO05D002914 5.5e-08 62.8 178 30.9
Haze_15815 Corylus avellana HOM05D002709 ORTHO05D002914 5.5e-08 62.8 181 31.5
Sopen01g032710 Solanum pennellii HOM05D002709 ORTHO05D002914 5.5e-08 62.8 183 31.7
CsaV3_2G011050 Cucumis sativus L. HOM05D002709 ORTHO05D002914 7.2e-08 62.4 201 28.9
MELO3C020370.2 Cucumis melo HOM05D002709 ORTHO05D002914 9.4e-08 62.0 202 28.7
DCAR_025008 Daucus carota HOM05D002709 ORTHO05D002914 9.4e-08 62.0 183 30.6
MD02G1240400 Malus domestica HOM05D002709 ORTHO05D002914 9.4e-08 62.0 183 30.1
Phvul.003G281300 Phaseolus vulgaris HOM05D002709 ORTHO05D002914 9.4e-08 62.0 167 29.3
Psat7g087680 Pisum sativum HOM05D002709 ORTHO05D002914 9.4e-08 62.0 171 31.6
Potri.016G068500 Populus trichocarpa HOM05D002709 ORTHO05D002914 9.4e-08 62.0 175 30.9
Solyc01g081100.3 Solanum lycopersicum HOM05D002709 ORTHO05D002914 9.4e-08 62.0 179 31.3
Thecc.10G002900 Theobroma cacao HOM05D002709 ORTHO05D002914 9.4e-08 62.0 188 32.4
Aa31LG5G5710 Aethionema arabicum HOM05D002709 ORTHO05D002914 1.2e-07 61.6 189 30.7
Gohir.A06G158600 Gossypium hirsutum HOM05D002709 ORTHO05D002914 1.6e-07 61.2 277 27.8
Gohir.D06G164500 Gossypium hirsutum HOM05D002709 ORTHO05D002914 2.1e-07 60.8 192 30.7
Gorai.010G191900 Gossypium raimondii HOM05D002709 ORTHO05D002914 2.1e-07 60.8 277 27.8
Oeu060686.1 Olea europaea HOM05D002709 ORTHO05D002914 2.1e-07 60.8 179 30.7
TPR.G23841 Trifolium pratense HOM05D002709 ORTHO05D002914 2.1e-07 60.8 169 29.6
MD02G1240500 Malus domestica HOM05D002709 ORTHO05D002914 2.7e-07 60.5 178 29.8
Haze_15816 Corylus avellana HOM05D002709 ORTHO05D002914 3.6e-07 60.1 139 34.5
Manes.10G132400 Manihot esculenta HOM05D002709 ORTHO05D002914 3.6e-07 60.1 180 28.9
VMungo0251G2843 Vigna mungo HOM05D002709 ORTHO05D002914 3.6e-07 60.1 167 29.9
CiPaw.13G149800 Carya illinoinensis HOM05D002709 ORTHO05D002914 4.7e-07 59.7 174 32.8
Glyma.16G090900 Glycine max HOM05D002709 ORTHO05D002914 4.7e-07 59.7 165 30.9
PGSC0003DMG400036434 Solanum tuberosum HOM05D002709 ORTHO05D002914 4.7e-07 59.7 202 26.7
VMungo0251G0109 Vigna mungo HOM05D002709 ORTHO05D002914 4.7e-07 59.7 176 29.5
CSS0035517 Camellia sinensis var. sinensis HOM05D002709 ORTHO05D002914 6.1e-07 59.3 170 28.8
DCAR_029561 Daucus carota HOM05D002709 ORTHO05D002914 6.1e-07 59.3 178 33.1
Duzib128G1731 Durio zibethinus HOM05D002709 ORTHO05D002914 6.1e-07 59.3 175 29.1
CSS0026946 Camellia sinensis var. sinensis HOM05D002709 ORTHO05D002914 7.9e-07 58.9 170 28.8
CANSAT25G2627 Cannabis sativa HOM05D002709 ORTHO05D002914 7.9e-07 58.9 171 31.0
CiPaw.13G149600 Carya illinoinensis HOM05D002709 ORTHO05D002914 7.9e-07 58.9 173 33.5
Lalb_Chr07g0188211 Lupinus albus HOM05D002709 ORTHO05D002914 7.9e-07 58.9 172 29.1
Medtr4g094762 Medicago truncatula HOM05D002709 ORTHO05D002914 7.9e-07 58.9 169 29.0
Phvul.002G187950 Phaseolus vulgaris HOM05D002709 ORTHO05D002914 7.9e-07 58.9 175 28.6
PGR042G3537 Punica granatum HOM05D002709 ORTHO05D002914 7.9e-07 58.9 185 29.7
Sed0026777 Sechium edule HOM05D002709 ORTHO05D002914 7.9e-07 58.9 191 27.7
CDE11G0990 Ceratophyllum demersum HOM05D002709 ORTHO05D002914 1.0e-06 58.5 196 28.6
SEGI_31869 Sequoiadendron giganteum HOM05D000567 ORTHO05D000767 1.0e-06 58.5 189 29.6
unitig_43.g31046 Utricularia gibba HOM05D002709 ORTHO05D002914 1.8e-06 57.8 151 32.5
unitig_578.g16500 Utricularia gibba HOM05D002709 ORTHO05D002914 1.8e-06 57.8 151 32.5
Glyma.05G134400 Glycine max HOM05D002709 ORTHO05D002914 2.3e-06 57.4 177 29.4
HanXRQChr03g0088191 Helianthus annuus HOM05D002709 ORTHO05D002914 2.3e-06 57.4 187 29.9
SalBow4G0764 Salvia bowleyana HOM05D002709 ORTHO05D002914 3.0e-06 57.0 160 27.5
SalBow4G2369 Salvia bowleyana HOM05D002709 ORTHO05D002914 3.0e-06 57.0 160 27.5
Hund17163 Selenicereus undatus HOM05D002709 ORTHO05D002914 3.0e-06 57.0 187 26.2
Actinidia05815 Actinidia chinensis HOM05D002709 ORTHO05D002914 3.9e-06 56.6 169 29.6
Glyma.08G089100 Glycine max HOM05D002709 ORTHO05D002914 3.9e-06 56.6 177 29.4
Thhalv10016616m.g Eutrema salsugineum HOM05D002709 ORTHO05D002914 5.1e-06 56.2 178 29.2
CDE12G0719 Ceratophyllum demersum HOM05D001604 ORTHO05D001432 6.7e-06 55.8 173 27.7
PSO063G5588 Papaver somniferum HOM05D002709 ORTHO05D002914 6.7e-06 55.8 189 28.0
arahy.Tifrunner.gnm1.ann1.P97QTY Arachis hypogaea HOM05D002709 ORTHO05D002914 8.8e-06 55.5 161 27.3
Lj4g0001908 Lotus japonicus HOM05D002709 ORTHO05D002914 8.8e-06 55.5 174 29.3


User provided reference genes

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