Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0031s0035 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.5e-175 618.6 302 100.0
Mapoly0041s0095 Marchantia polymorpha HOM05D011080 ORTHO05D000239 5.4e-53 212.2 280 42.1
Mapoly0064s0093 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.9e-45 187.2 301 36.9
Mapoly1060s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.6e-44 182.6 276 39.5
Mapoly0007s0015 Marchantia polymorpha HOM05D000005 ORTHO05D000239 6.0e-44 182.2 288 37.8
Mapoly0200s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.7e-43 180.6 265 38.1
Mapoly0062s0120 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.3e-43 180.3 286 35.3
Mapoly0893s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 3.0e-43 179.9 276 38.8
Mapoly0049s0015 Marchantia polymorpha HOM05D004348 ORTHO05D000239 3.9e-43 179.5 276 37.0
Mapoly0010s0128 Marchantia polymorpha HOM05D000005 ORTHO05D000239 5.6e-42 175.6 274 37.2
Mapoly2546s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.1e-41 173.7 262 37.0
Mapoly0067s0038 Marchantia polymorpha HOM05D000005 ORTHO05D000239 4.8e-41 172.6 278 35.6
Mapoly0107s0021 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.8e-41 172.6 274 37.6
Mapoly0067s0036 Marchantia polymorpha HOM05D011080 ORTHO05D000239 2.4e-40 170.2 297 34.0
Mapoly0637s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.0e-40 169.5 261 36.0
Mapoly0080s0029 Marchantia polymorpha HOM05D011080 ORTHO05D000239 2.1e-36 157.1 294 35.7
Mapoly0053s0005 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.3e-35 154.5 292 33.6
Mapoly0200s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 3.0e-35 153.3 250 34.8
Mapoly0108s0037 Marchantia polymorpha HOM05D029023 ORTHO05D030122 4.3e-34 149.4 255 35.3
Mapoly0555s0001 Marchantia polymorpha HOM05D029023 ORTHO05D030122 4.3e-34 149.4 255 35.3
Mapoly0067s0037 Marchantia polymorpha HOM05D011080 ORTHO05D000239 4.8e-33 146.0 300 32.7
Mapoly0052s0114 Marchantia polymorpha HOM05D029023 ORTHO05D030122 6.2e-33 145.6 255 34.9
Mapoly0064s0096 Marchantia polymorpha HOM05D004348 ORTHO05D000239 9.9e-31 138.3 203 39.9
Mapoly0110s0039 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.7e-30 137.5 282 30.5
Mapoly0016s0164 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.2e-28 131.3 190 38.4
Mapoly0120s0019 Marchantia polymorpha HOM05D004348 ORTHO05D000239 6.0e-28 129.0 255 32.5
PGSC0003DMG400007988 Solanum tuberosum HOM05D004348 ORTHO05D006191 7.4e-26 122.1 283 29.0
Solyc04g079280.4 Solanum lycopersicum HOM05D004348 ORTHO05D006191 2.1e-25 120.6 283 29.0
Sopen04g032870 Solanum pennellii HOM05D004348 ORTHO05D006191 2.1e-25 120.6 283 29.0
ECA247G1923 Erigeron canadensis HOM05D004348 ORTHO05D006191 3.7e-25 119.8 284 31.0
Thecc.08G012500 Theobroma cacao HOM05D004348 ORTHO05D006191 3.7e-25 119.8 269 30.5
vmacro21553 Vaccinium macrocarpon HOM05D004348 ORTHO05D006191 6.2e-25 119.0 312 29.5
FvH4_2g34840 Fragaria vesca HOM05D004348 ORTHO05D006191 1.1e-24 118.2 271 29.2
Mapoly0032s0031 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.1e-24 118.2 288 27.4
Mapoly0071s0031 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.4e-24 117.9 294 28.6
RcHm_v2.0_Chr6g0307221 Rosa chinensis HOM05D004348 ORTHO05D006191 1.4e-24 117.9 268 29.5
TAR625G1112 Trochodendron aralioides HOM05D004348 ORTHO05D006191 1.4e-24 117.9 270 30.4
ATR1159G040 Amborella trichopoda HOM05D004348 ORTHO05D006191 2.4e-24 117.1 270 30.0
VMungo0647G0261 Vigna mungo HOM05D004348 ORTHO05D006191 2.4e-24 117.1 271 30.6
Aqoxy5G01277 Aquilegia oxysepala HOM05D004348 ORTHO05D006191 4.0e-24 116.3 274 30.3
Mapoly0108s0045 Marchantia polymorpha HOM05D020945 ORTHO05D000713 5.3e-24 115.9 287 29.6
Mapoly0397s0001 Marchantia polymorpha HOM05D020945 ORTHO05D253181 5.3e-24 115.9 288 28.5
Nn5g30212 Nelumbo nucifera HOM05D004348 ORTHO05D006191 5.3e-24 115.9 302 29.1
Pp3c17_5660 Physcomitrium patens HOM05D004348 ORTHO05D006191 6.9e-24 115.5 279 29.4
Cc10_g04460 Coffea canephora HOM05D004348 ORTHO05D006191 9.0e-24 115.2 284 29.2
HanXRQChr02g0038751 Helianthus annuus HOM05D004348 ORTHO05D006191 9.0e-24 115.2 268 29.9
Mapoly0074s0030 Marchantia polymorpha HOM05D011080 ORTHO05D254173 1.5e-23 114.4 279 30.8
CAN.G371.44 Capsicum annuum HOM05D004348 ORTHO05D006191 2.0e-23 114.0 268 29.1
Prupe.1G440200 Prunus persica HOM05D004348 ORTHO05D006191 2.0e-23 114.0 295 28.1
Sp7g32110 Schrenkiella parvula HOM05D004348 ORTHO05D006191 2.6e-23 113.6 276 28.3
GSVIVG01009553001 Vitis vinifera HOM05D004348 ORTHO05D006191 2.6e-23 113.6 276 29.7
arahy.Tifrunner.gnm1.ann1.2EEB7P Arachis hypogaea HOM05D004348 ORTHO05D006191 3.4e-23 113.2 268 29.9
arahy.Tifrunner.gnm1.ann1.3D95JG Arachis hypogaea HOM05D004348 ORTHO05D006191 3.4e-23 113.2 268 29.9
Gohir.A01G118500 Gossypium hirsutum HOM05D004348 ORTHO05D006191 3.4e-23 113.2 270 29.6
Gohir.D01G106800 Gossypium hirsutum HOM05D004348 ORTHO05D006191 3.4e-23 113.2 270 29.6
MD08G1105600 Malus domestica HOM05D004348 ORTHO05D006191 3.4e-23 113.2 268 29.1
Sc02g0006980 Simmondsia chinensis HOM05D004348 ORTHO05D006191 3.4e-23 113.2 269 27.9
THA.LOC104806947 Tarenaya hassleriana HOM05D004348 ORTHO05D006191 3.4e-23 113.2 283 29.3
C01p04470 Brassica napus HOM05D004348 ORTHO05D006191 4.5e-23 112.8 273 27.8
BolC1t00433H Brassica oleracea HOM05D004348 ORTHO05D006191 4.5e-23 112.8 273 27.8
MD15G1086600 Malus domestica HOM05D004348 ORTHO05D006191 4.5e-23 112.8 268 29.1
A01p04110 Brassica napus HOM05D004348 ORTHO05D006191 5.8e-23 112.5 273 27.8
BraA01t00399Z Brassica rapa HOM05D004348 ORTHO05D006191 5.8e-23 112.5 273 27.8
Ciclev10000175m.g Citrus clementina HOM05D004348 ORTHO05D006191 5.8e-23 112.5 304 28.3
Gorai.002G131100 Gossypium raimondii HOM05D004348 ORTHO05D006191 5.8e-23 112.5 270 29.6
Mapoly0147s0004 Marchantia polymorpha HOM05D000242 ORTHO05D000700 5.8e-23 112.5 287 28.2
PGR031G2748 Punica granatum HOM05D004348 ORTHO05D006191 5.8e-23 112.5 278 29.5
Atru.chr13.637 Acer truncatum HOM05D004348 ORTHO05D006191 7.6e-23 112.1 272 29.4
AagrBONN_evm.TU.Sc2ySwM_344.1636 Anthoceros agrestis HOM05D004348 ORTHO05D006191 7.6e-23 112.1 273 30.4
Mapoly0020s0126 Marchantia polymorpha HOM05D000242 ORTHO05D000700 7.6e-23 112.1 285 27.4
Pp3c24_4860 Physcomitrium patens HOM05D004348 ORTHO05D000239 7.6e-23 112.1 151 39.7
SMO144G0009 Selaginella moellendorffii HOM05D004348 ORTHO05D006191 7.6e-23 112.1 271 31.0
Lsat_1_v5_gn_4_124060 Lactuca sativa HOM05D004348 ORTHO05D006191 1.0e-22 111.7 267 31.1
Medtr1g019960 Medicago truncatula HOM05D004348 ORTHO05D006191 1.0e-22 111.7 268 29.9
Rhsim06G0047100 Rhododendron simsii HOM05D004348 ORTHO05D006191 1.0e-22 111.7 315 27.9
Mapoly0062s0059 Marchantia polymorpha HOM05D000005 ORTHO05D000239 1.3e-22 111.3 179 34.6
Mapoly0119s0056 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.3e-22 111.3 295 26.1
AL7G16960 Arabidopsis lyrata HOM05D004348 ORTHO05D006191 1.7e-22 110.9 273 27.5
AT4G34310 Arabidopsis thaliana HOM05D004348 ORTHO05D006191 2.2e-22 110.5 273 27.5
Carub.0007s0605 Capsella rubella HOM05D004348 ORTHO05D006191 2.2e-22 110.5 273 27.5
Mapoly0147s0041 Marchantia polymorpha HOM05D000242 ORTHO05D000700 2.2e-22 110.5 283 28.3
Mapoly0346s0002 Marchantia polymorpha HOM05D020945 ORTHO05D254421 2.2e-22 110.5 286 27.6
Phvul.001G020000 Phaseolus vulgaris HOM05D004348 ORTHO05D006191 2.2e-22 110.5 268 30.2
ClCG05G019730 Citrullus lanatus HOM05D004348 ORTHO05D006191 2.9e-22 110.2 268 28.4
Actinidia15256 Actinidia chinensis HOM05D004348 ORTHO05D006191 3.8e-22 109.8 291 27.8
CSS0012651 Camellia sinensis var. sinensis HOM05D004348 ORTHO05D006191 3.8e-22 109.8 276 29.7
CARHR242470 Cardamine hirsuta HOM05D004348 ORTHO05D006191 4.9e-22 109.4 272 27.9
Mapoly0147s0044 Marchantia polymorpha HOM05D000242 ORTHO05D000700 4.9e-22 109.4 287 30.3
Lj4A53T53 Lonicera japonica HOM05D004348 ORTHO05D006191 6.5e-22 109.0 261 31.0
Os03g0185500 Oryza sativa ssp. japonica HOM05D004348 ORTHO05D006191 6.5e-22 109.0 273 28.6
SEGI_07910 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 6.5e-22 109.0 287 28.9
Sed0012719 Sechium edule HOM05D004348 ORTHO05D006191 8.4e-22 108.6 269 28.6
AUR62039313 Chenopodium quinoa HOM05D004348 ORTHO05D006191 1.1e-21 108.2 268 27.6
Peaxi162Scf00528g00825 Petunia axillaris HOM05D004348 ORTHO05D006191 1.1e-21 108.2 268 29.5
AUR62022445 Chenopodium quinoa HOM05D004348 ORTHO05D006191 1.4e-21 107.8 268 27.2
CsaV3_4G034150 Cucumis sativus L. HOM05D004348 ORTHO05D006191 1.4e-21 107.8 268 28.0
Migut.N02696 Erythranthe guttata HOM05D004348 ORTHO05D006191 1.4e-21 107.8 261 30.3
Manes.05G171200 Manihot esculenta HOM05D004348 ORTHO05D006191 1.4e-21 107.8 273 29.3
Lalb_Chr24g0399211 Lupinus albus HOM05D004348 ORTHO05D006191 1.9e-21 107.5 268 28.0
Oeu057258.1 Olea europaea HOM05D004348 ORTHO05D006191 2.5e-21 107.1 283 28.6
Atru.chr1.1668 Acer truncatum HOM05D004348 ORTHO05D006191 3.2e-21 106.7 269 28.6
EL10Ac1g01783 Beta vulgaris HOM05D004348 ORTHO05D006191 3.2e-21 106.7 268 26.9
CiPaw.16G046500 Carya illinoinensis HOM05D004348 ORTHO05D006191 3.2e-21 106.7 269 29.7
Thhalv10024246m.g Eutrema salsugineum HOM05D004348 ORTHO05D006191 3.2e-21 106.7 273 27.5
Mapoly0033s0109 Marchantia polymorpha HOM05D004348 ORTHO05D006191 3.2e-21 106.7 301 29.9
Psat6g012000 Pisum sativum HOM05D004348 ORTHO05D006191 3.2e-21 106.7 268 28.0
Lj5g0025546 Lotus japonicus HOM05D004348 ORTHO05D006191 4.2e-21 106.3 268 28.7
Nitab4.5_0000068g0550 Nicotiana tabacum HOM05D004348 ORTHO05D006191 4.2e-21 106.3 268 28.0
FAN27G3414 Fragaria x ananassa HOM05D004348 ORTHO05D006191 5.5e-21 105.9 224 29.5
Mapoly0116s0050 Marchantia polymorpha HOM05D011080 ORTHO05D252286 9.3e-21 105.1 296 27.4
Sed0015301 Sechium edule HOM05D004348 ORTHO05D006191 9.3e-21 105.1 261 28.4
Mapoly2448s0001 Marchantia polymorpha HOM05D020945 ORTHO05D251686 1.2e-20 104.8 201 32.3
CDE10G0919 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 1.6e-20 104.4 282 27.3
MELO3C016737.2 Cucumis melo HOM05D004348 ORTHO05D006191 1.6e-20 104.4 268 28.7
DCAR_020931 Daucus carota HOM05D004348 ORTHO05D006191 1.6e-20 104.4 268 29.9
CANSAT78G0057 Cannabis sativa HOM05D004348 ORTHO05D006191 2.1e-20 104.0 267 27.7
Cfa018516 Carpinus fangiana HOM05D004348 ORTHO05D006191 2.1e-20 104.0 271 29.5
HanXRQChr16g0507461 Helianthus annuus HOM05D004348 ORTHO05D006191 2.1e-20 104.0 263 28.5
Potri.014G034100 Populus trichocarpa HOM05D004348 ORTHO05D006191 2.1e-20 104.0 269 26.8
Hma1.2p1_0337F.1_g129300 Hydrangea macrophylla HOM05D004348 ORTHO05D006191 6.0e-20 102.4 269 28.6
Mapoly0120s0038 Marchantia polymorpha HOM05D011080 ORTHO05D256860 6.0e-20 102.4 294 29.3
CDE10G0798 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 1.3e-19 101.3 283 27.9
Eucgr.F02367 Eucalyptus grandis HOM05D004348 ORTHO05D006191 3.9e-19 99.8 269 26.8
QL02p005708 Quercus lobata HOM05D004348 ORTHO05D006191 3.9e-19 99.8 276 26.8
Cpa.g.c24415.13 Carica papaya HOM05D004348 ORTHO05D006191 6.7e-19 99.0 268 28.0
Mapoly0147s0002 Marchantia polymorpha HOM05D020945 ORTHO05D251377 8.7e-19 98.6 278 28.8
Oeu003300.1 Olea europaea HOM05D004348 ORTHO05D006191 4.3e-18 96.3 280 28.6
Pp3c9_17530 Physcomitrium patens HOM05D031884 ORTHO05D311885 1.6e-17 94.4 276 27.5
Mapoly0016s0166 Marchantia polymorpha HOM05D004348 ORTHO05D000239 3.7e-17 93.2 180 29.4
Glyma.14G081100 Glycine max HOM05D004348 ORTHO05D006191 4.8e-17 92.8 261 26.4
COL.COLO4_26463 Corchorus olitorius HOM05D004348 ORTHO05D006191 8.2e-17 92.0 249 29.3
Duzib093G0393 Durio zibethinus HOM05D004348 ORTHO05D006191 8.2e-17 92.0 214 28.0
ECA232G4920 Erigeron canadensis HOM05D004348 ORTHO05D006191 1.4e-16 91.3 249 27.7
Mapoly0147s0001 Marchantia polymorpha HOM05D020945 ORTHO05D253211 1.4e-16 91.3 277 27.4
FAN15G1136 Fragaria x ananassa HOM05D004348 ORTHO05D006191 4.1e-16 89.7 236 28.4
CBR_g45541 Chara braunii HOM05D004348 ORTHO05D006191 6.9e-16 89.0 314 24.8
Cre16.g686501 Chlamydomonas reinhardtii HOM05D004348 ORTHO05D006191 6.9e-16 89.0 311 28.9
Mapoly0120s0017 Marchantia polymorpha HOM05D011080 ORTHO05D000239 6.9e-16 89.0 231 31.2
Mapoly0041s0073 Marchantia polymorpha HOM05D011080 ORTHO05D255563 2.0e-15 87.4 288 26.4
Hund26625 Selenicereus undatus HOM05D004348 ORTHO05D006191 3.4e-15 86.7 305 22.6
PSO675G6987 Papaver somniferum HOM05D004348 ORTHO05D006191 5.9e-15 85.9 236 27.5
Aa31LG2G16180 Aethionema arabicum HOM05D004348 ORTHO05D006191 7.6e-15 85.5 217 26.7
Mapoly0120s0043 Marchantia polymorpha HOM05D011080 ORTHO05D255325 1.0e-14 85.1 242 29.3
Dinv35980 Davidia involucrata HOM05D004348 ORTHO05D006191 1.3e-14 84.7 241 27.4
Sabra14G0024200 Salix brachista HOM05D004348 ORTHO05D006191 2.9e-14 83.6 242 26.0
MSTRG.22274 Avicennia marina HOM05D004348 ORTHO05D006191 3.8e-14 83.2 178 32.0
TPR.G13698 Trifolium pratense HOM05D004348 ORTHO05D006191 8.4e-14 82.0 161 29.8
Mapoly0120s0044 Marchantia polymorpha HOM05D011080 ORTHO05D253140 1.9e-13 80.9 222 28.4
Glyma.17G244300 Glycine max HOM05D004348 ORTHO05D006191 2.5e-13 80.5 160 31.2
Zm00001eb006390 Zea mays HOM05D004348 ORTHO05D006191 7.2e-13 79.0 261 27.6
PRCOL_00001182 Prasinoderma coloniale HOM05D004348 ORTHO05D006191 1.3e-11 74.7 293 28.7
unitig_26.g10060 Utricularia gibba HOM05D004348 ORTHO05D006191 2.5e-10 70.5 190 27.4
Mapoly0120s0039 Marchantia polymorpha HOM05D011080 ORTHO05D252314 6.3e-09 65.9 130 30.8
HPP92_019297 Vanilla planifolia HOM05D004348 ORTHO05D006191 1.4e-08 64.7 134 29.1
Pp3c17_8890 Physcomitrium patens HOM05D031884 ORTHO05D310179 2.4e-08 63.9 290 24.1
Pp3c17_8900 Physcomitrium patens HOM05D031884 ORTHO05D309904 2.0e-07 60.8 185 28.1


User provided reference genes

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