Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 2.1e-109 399.1 204 100.0
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 9.3e-49 197.6 134 73.9
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 2.7e-48 196.1 143 73.4
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 1.0e-47 194.1 133 72.9
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 3.9e-47 192.2 138 71.7
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 6.7e-47 191.4 138 71.0
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 8.7e-47 191.0 139 70.5
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 8.7e-47 191.0 140 70.0
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 1.1e-46 190.7 138 73.2
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 1.5e-46 190.3 137 71.5
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 1.5e-46 190.3 140 69.3
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 1.5e-46 190.3 139 71.2
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 1.9e-46 189.9 139 71.2
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 2.5e-46 189.5 133 71.4
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 3.3e-46 189.1 140 68.6
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 3.3e-46 189.1 145 66.9
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 3.3e-46 189.1 139 69.8
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 4.3e-46 188.7 160 60.6
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 4.3e-46 188.7 140 68.6
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 5.7e-46 188.3 139 68.3
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 5.7e-46 188.3 139 68.3
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 7.4e-46 188.0 136 70.6
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 7.4e-46 188.0 136 69.9
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 1.6e-45 186.8 138 70.3
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 1.6e-45 186.8 135 67.4
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 2.1e-45 186.4 139 69.8
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 2.1e-45 186.4 139 69.8
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 2.1e-45 186.4 144 66.7
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 2.1e-45 186.4 137 71.5
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 3.7e-45 185.7 136 66.9
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 3.7e-45 185.7 140 69.3
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 3.7e-45 185.7 140 69.3
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 4.8e-45 185.3 135 66.7
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 4.8e-45 185.3 132 67.4
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 4.8e-45 185.3 137 68.6
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 4.8e-45 185.3 137 68.6
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 4.8e-45 185.3 137 68.6
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 4.8e-45 185.3 157 63.7
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 4.8e-45 185.3 139 66.9
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 6.3e-45 184.9 132 68.9
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 8.2e-45 184.5 139 68.3
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 1.1e-44 184.1 135 70.4
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 1.1e-44 184.1 137 69.3
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 1.1e-44 184.1 136 66.9
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 1.4e-44 183.7 137 70.1
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 1.4e-44 183.7 132 71.2
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 1.4e-44 183.7 140 67.9
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 1.4e-44 183.7 137 70.1
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 1.8e-44 183.3 136 66.2
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 1.8e-44 183.3 137 68.6
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 1.8e-44 183.3 136 65.4
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 1.8e-44 183.3 137 70.1
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 1.8e-44 183.3 131 71.0
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 1.8e-44 183.3 157 62.4
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 2.4e-44 183.0 140 65.0
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 2.4e-44 183.0 134 67.2
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 2.4e-44 183.0 183 55.2
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 3.1e-44 182.6 134 70.1
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 3.1e-44 182.6 158 63.3
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 4.1e-44 182.2 137 66.4
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 4.1e-44 182.2 136 65.4
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 4.1e-44 182.2 137 68.6
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 4.1e-44 182.2 140 67.9
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 5.3e-44 181.8 137 69.3
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 5.3e-44 181.8 135 65.9
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 5.3e-44 181.8 132 71.2
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 5.3e-44 181.8 159 61.6
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 6.9e-44 181.4 135 69.6
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 6.9e-44 181.4 137 68.6
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 6.9e-44 181.4 146 65.1
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 6.9e-44 181.4 146 65.1
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 9.0e-44 181.0 140 67.1
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 9.0e-44 181.0 137 69.3
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 9.0e-44 181.0 137 69.3
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 1.2e-43 180.6 139 64.0
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 1.2e-43 180.6 135 65.9
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 1.2e-43 180.6 140 67.1
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 1.5e-43 180.3 137 67.2
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 1.5e-43 180.3 153 62.7
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 1.5e-43 180.3 137 68.6
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 2.0e-43 179.9 134 64.9
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 2.0e-43 179.9 133 67.7
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 2.0e-43 179.9 140 65.7
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 2.0e-43 179.9 134 66.4
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 2.6e-43 179.5 134 65.7
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 2.6e-43 179.5 143 67.1
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 2.6e-43 179.5 145 66.2
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 3.4e-43 179.1 147 64.6
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 4.5e-43 178.7 142 66.2
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 4.5e-43 178.7 136 67.6
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 4.5e-43 178.7 135 68.1
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 4.5e-43 178.7 135 68.1
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 4.5e-43 178.7 137 67.2
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 4.5e-43 178.7 141 65.2
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 5.9e-43 178.3 134 68.7
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 7.6e-43 177.9 142 66.2
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 7.6e-43 177.9 135 67.4
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 7.6e-43 177.9 137 65.7
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 1.0e-42 177.6 142 62.0
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 1.0e-42 177.6 142 62.0
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 1.0e-42 177.6 142 62.0
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 1.0e-42 177.6 142 62.0
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 1.0e-42 177.6 138 67.4
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 1.3e-42 177.2 135 68.1
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 1.7e-42 176.8 160 60.0
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 2.2e-42 176.4 141 61.7
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 2.2e-42 176.4 145 62.8
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 2.2e-42 176.4 164 61.0
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 2.2e-42 176.4 108 79.6
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 2.9e-42 176.0 136 64.7
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 3.8e-42 175.6 137 67.9
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 6.5e-42 174.9 147 62.6
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 8.5e-42 174.5 138 65.2
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 1.1e-41 174.1 147 63.3
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 1.1e-41 174.1 138 66.7
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 1.1e-41 174.1 118 72.0
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 1.4e-41 173.7 140 64.3
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 1.4e-41 173.7 156 60.9
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 1.9e-41 173.3 112 76.8
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 4.2e-41 172.2 148 60.8
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 5.5e-41 171.8 127 69.3
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 7.2e-41 171.4 137 63.5
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 1.6e-40 170.2 112 75.0
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 1.6e-40 170.2 112 75.0
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 1.6e-40 170.2 137 64.2
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 4.6e-40 168.7 113 72.6
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 4.6e-40 168.7 116 72.4
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 7.9e-40 167.9 113 73.5
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 1.0e-39 167.5 136 64.0
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 1.0e-39 167.5 139 63.3
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 2.3e-39 166.4 175 53.1
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 3.9e-39 165.6 115 72.2
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 5.1e-39 165.2 110 70.9
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 8.7e-39 164.5 147 61.9
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 1.1e-38 164.1 112 72.3
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 3.3e-38 162.5 110 73.6
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 4.3e-38 162.2 131 62.6
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 3.7e-37 159.1 106 73.6
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 4.8e-37 158.7 108 75.0
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 2.4e-36 156.4 174 50.6
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 6.9e-36 154.8 119 66.4
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 2.0e-35 153.3 119 66.4
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 3.4e-35 152.5 161 54.7
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 5.9e-35 151.8 140 60.7
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 7.7e-35 151.4 139 59.7
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 1.4e-33 147.1 152 55.3
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 1.4e-33 147.1 152 55.3
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 1.2e-32 144.1 136 55.9
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 1.2e-32 144.1 110 66.4
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 1.7e-29 133.7 152 51.3
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 1.7e-29 133.7 100 71.0
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 6.3e-29 131.7 141 55.3
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 6.9e-28 128.3 136 53.7
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 9.1e-28 127.9 96 66.7
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 5.9e-27 125.2 113 56.6
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 1.8e-23 113.6 141 45.4
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 3.5e-19 99.4 86 62.8
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 4.5e-19 99.0 119 49.6
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 1.7e-18 97.1 94 52.1
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 5.0e-18 95.5 91 53.8
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 3.2e-17 92.8 86 54.7
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 1.2e-16 90.9 76 63.2
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 2.1e-16 90.1 86 53.5
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 2.1e-16 90.1 86 53.5
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.0e-15 87.8 80 58.8
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 1.1e-12 77.8 90 48.9
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 3.1e-12 76.3 44 84.1
CARHR238490 Cardamine hirsuta HOM05D004106 ORTHO05D004381 5.0e-10 68.9 51 64.7
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 2.7e-08 63.2 47 63.8


User provided reference genes

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