Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 9.6e-220 766.5 391 100.0
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 9.9e-132 474.2 390 64.6
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 2.9e-123 446.0 382 60.5
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 2.5e-119 433.0 383 57.4
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 1.3e-118 430.6 378 58.2
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 1.6e-118 430.3 372 58.1
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 2.1e-118 429.9 383 56.9
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 1.1e-117 427.6 383 57.7
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.4e-117 427.2 385 57.9
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 2.4e-117 426.4 374 58.0
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 2.4e-117 426.4 371 58.5
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 2.4e-117 426.4 371 58.5
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 3.1e-117 426.0 374 59.1
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 5.3e-117 425.2 384 57.0
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 6.9e-117 424.9 370 58.6
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 6.9e-117 424.9 343 60.6
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 9.0e-117 424.5 383 56.4
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.2e-116 424.1 383 56.4
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 1.5e-116 423.7 370 58.1
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.5e-116 423.7 372 58.1
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 1.5e-116 423.7 368 57.9
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 2.6e-116 422.9 352 59.7
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 2.6e-116 422.9 372 58.6
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 3.4e-116 422.5 387 55.6
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 4.5e-116 422.2 383 56.1
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 4.5e-116 422.2 372 58.1
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 4.5e-116 422.2 352 59.7
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 5.8e-116 421.8 330 62.7
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 7.6e-116 421.4 392 56.6
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 7.6e-116 421.4 381 56.7
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 9.9e-116 421.0 385 57.4
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 1.3e-115 420.6 383 56.9
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 1.3e-115 420.6 387 56.8
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 1.3e-115 420.6 383 57.7
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 1.3e-115 420.6 331 63.1
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 1.7e-115 420.2 372 57.3
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 1.7e-115 420.2 382 56.8
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 1.7e-115 420.2 366 58.2
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 2.2e-115 419.9 343 60.3
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 2.2e-115 419.9 372 57.0
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 2.2e-115 419.9 352 59.9
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 2.2e-115 419.9 370 58.4
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 2.2e-115 419.9 334 62.3
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 2.9e-115 419.5 383 56.9
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 2.9e-115 419.5 373 58.7
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 2.9e-115 419.5 334 61.1
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 4.9e-115 418.7 334 62.3
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 4.9e-115 418.7 372 58.6
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 4.9e-115 418.7 367 57.5
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 4.9e-115 418.7 367 57.5
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 6.4e-115 418.3 385 57.1
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 6.4e-115 418.3 383 56.4
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 8.4e-115 417.9 388 54.9
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 8.4e-115 417.9 350 59.7
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 8.4e-115 417.9 372 57.3
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 8.4e-115 417.9 369 59.1
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 1.1e-114 417.5 358 58.7
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 1.1e-114 417.5 350 60.3
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 1.1e-114 417.5 383 57.7
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 1.1e-114 417.5 330 62.7
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 1.4e-114 417.2 384 57.6
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 1.9e-114 416.8 384 55.7
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 3.2e-114 416.0 383 56.1
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 4.2e-114 415.6 334 61.4
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 5.5e-114 415.2 363 58.1
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 5.5e-114 415.2 352 59.7
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 7.1e-114 414.8 374 57.5
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 7.1e-114 414.8 383 57.2
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 9.3e-114 414.5 404 54.5
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.6e-113 413.7 331 62.5
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 3.5e-113 412.5 387 54.0
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 3.5e-113 412.5 383 56.9
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 3.5e-113 412.5 383 55.6
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 4.6e-113 412.1 380 56.8
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 4.6e-113 412.1 343 59.5
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 6.0e-113 411.8 391 56.0
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 7.9e-113 411.4 368 56.0
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 7.9e-113 411.4 383 56.7
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 1.3e-112 410.6 384 56.5
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 1.8e-112 410.2 343 59.8
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 2.3e-112 409.8 334 61.7
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 3.0e-112 409.5 334 61.4
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 3.0e-112 409.5 402 54.5
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 3.0e-112 409.5 383 54.6
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 3.0e-112 409.5 383 56.7
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 3.9e-112 409.1 394 53.3
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 8.7e-112 407.9 379 56.7
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 8.7e-112 407.9 387 54.3
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 8.7e-112 407.9 385 55.6
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 1.5e-111 407.1 384 55.2
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.5e-111 407.1 368 55.7
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 2.5e-111 406.4 384 55.2
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.5e-111 406.4 424 51.9
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 3.3e-111 406.0 383 55.6
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 4.3e-111 405.6 350 57.4
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 7.4e-111 404.8 354 57.9
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 9.6e-111 404.4 359 57.7
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 2.1e-110 403.3 385 54.8
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 6.2e-110 401.7 383 54.6
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 8.1e-110 401.4 378 54.2
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 3.1e-109 399.4 343 58.0
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 1.2e-108 397.5 334 58.7
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 2.0e-108 396.7 373 56.0
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 3.4e-108 396.0 361 56.2
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.1e-106 391.0 370 55.7
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 2.5e-106 389.8 409 52.3
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 3.2e-106 389.4 322 60.6
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 2.7e-105 386.3 364 56.9
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 6.3e-94 348.6 350 53.1
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 6.3e-94 348.6 350 53.1
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 6.3e-94 348.6 331 55.6
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 1.0e-91 341.3 413 47.9
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 5.7e-87 325.5 291 57.4
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 6.3e-86 322.0 370 48.6
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 2.0e-84 317.0 298 55.4
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 1.9e-82 310.5 329 49.2
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 3.3e-79 299.7 283 55.8
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 1.8e-77 293.9 239 60.3
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 4.1e-77 292.7 314 50.0
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 2.0e-76 290.4 346 46.8
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 2.6e-76 290.0 329 50.2
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 2.1e-73 280.4 332 44.6
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 4.8e-70 269.2 383 42.3
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 3.5e-68 263.1 347 42.9
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 2.7e-65 253.4 277 50.2
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 2.0e-52 210.7 197 55.3
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 5.0e-51 206.1 330 37.9
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 2.6e-47 193.7 118 75.4
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 8.3e-46 188.7 319 37.0
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 2.3e-40 170.6 328 33.2
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.0e-35 155.2 90 74.4
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 6.6e-35 152.5 318 32.1
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 8.6e-35 152.1 110 64.5
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 1.9e-34 151.0 134 54.5
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 7.5e-31 139.0 134 53.7
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 1.8e-24 117.9 131 45.0
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.2e-23 115.2 122 47.5
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 6.4e-22 109.4 117 48.7
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 1.2e-20 105.1 65 76.9
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 6.2e-17 92.8 58 67.2
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 2.0e-15 87.8 98 44.9
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 1.1e-13 82.0 68 63.2
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 1.9e-13 81.3 99 46.5
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 1.9e-13 81.3 59 66.1
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 3.3e-10 70.5 74 43.2
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 8.4e-06 55.8 70 45.7


User provided reference genes

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