Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0030s0069 Marchantia polymorpha HOM05D001353 ORTHO05D013162 2.9e-191 671.8 349 100.0
Pp3c22_7030 Physcomitrium patens HOM05D001353 ORTHO05D013162 4.1e-89 332.4 292 58.6
CBR_g48193 Chara braunii HOM05D001353 ORTHO05D013162 2.7e-88 329.7 285 62.5
SMO172G0193 Selaginella moellendorffii HOM05D001353 ORTHO05D013162 2.7e-88 329.7 268 61.2
AagrBONN_evm.TU.Sc2ySwM_362.2049 Anthoceros agrestis HOM05D001353 ORTHO05D013162 7.3e-86 321.6 280 58.6
AagrBONN_evm.TU.Sc2ySwM_228.5585 Anthoceros agrestis HOM05D001353 ORTHO05D013162 8.1e-85 318.2 285 58.9
SEGI_36398 Sequoiadendron giganteum HOM05D001353 ORTHO05D013162 7.6e-83 311.6 281 55.5
Pp3c21_4790 Physcomitrium patens HOM05D001353 ORTHO05D013162 2.3e-71 273.5 222 60.4
Cfa022620 Carpinus fangiana HOM05D001353 ORTHO05D013162 1.4e-52 211.1 285 43.2
PRCOL_00006801 Prasinoderma coloniale HOM05D001353 ORTHO05D013162 4.2e-49 199.5 291 41.9
PRCOL_00001011 Prasinoderma coloniale HOM05D001353 ORTHO05D013162 9.7e-46 188.3 274 42.0
PRCOL_00004954 Prasinoderma coloniale HOM05D001353 ORTHO05D013162 2.8e-37 160.2 226 39.4
Cre03.g199050 Chlamydomonas reinhardtii HOM05D000207 ORTHO05D017345 4.8e-37 159.5 255 37.3
Cre16.g663200 Chlamydomonas reinhardtii HOM05D000207 ORTHO05D024952 9.1e-36 155.2 279 35.5
Cre12.g493250 Chlamydomonas reinhardtii HOM05D000207 ORTHO05D024952 2.9e-34 150.2 240 35.8
PRCOL_00002746 Prasinoderma coloniale HOM05D001353 ORTHO05D002359 7.2e-33 145.6 328 33.2
MCO16G578 Micromonas commoda HOM05D001353 ORTHO05D013162 4.7e-32 142.9 230 38.7
MCO08G292 Micromonas commoda HOM05D000207 ORTHO05D017345 9.7e-30 135.2 290 31.7
Cre10.g443550 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D002359 2.2e-29 134.0 247 33.6
Haze_26803 Corylus avellana HOM05D000207 ORTHO05D017345 1.1e-28 131.7 232 35.8
Mapoly0129s0023 Marchantia polymorpha HOM05D001353 ORTHO05D013162 2.4e-28 130.6 73 87.7
MCO16G083 Micromonas commoda HOM05D000207 ORTHO05D024952 7.0e-28 129.0 280 30.4
Mapoly0029s0103 Marchantia polymorpha HOM05D000207 ORTHO05D017345 1.2e-27 128.3 234 33.3
CBR_g9064 Chara braunii HOM05D001353 ORTHO05D024952 7.7e-27 125.6 221 34.8
PRCOL_00004149 Prasinoderma coloniale HOM05D000207 ORTHO05D002370 6.5e-26 122.5 268 33.2
AagrBONN_evm.TU.Sc2ySwM_344.2140 Anthoceros agrestis HOM05D000207 ORTHO05D017345 1.6e-24 117.9 258 31.4
PRCOL_00003761 Prasinoderma coloniale HOM05D000207 ORTHO05D024952 1.6e-24 117.9 243 32.5
SMO119G0320 Selaginella moellendorffii HOM05D001353 ORTHO05D002359 1.6e-24 117.9 250 29.2
MD15G1192800 Malus domestica HOM05D001353 ORTHO05D002359 6.1e-24 115.9 300 30.7
Actinidia09438 Actinidia chinensis HOM05D001353 ORTHO05D002359 2.3e-23 114.0 300 29.0
AT2G20050 Arabidopsis thaliana HOM05D001353 ORTHO05D002359 5.2e-23 112.8 276 28.6
CARHR110520 Cardamine hirsuta HOM05D001353 ORTHO05D002359 5.2e-23 112.8 276 29.3
HanXRQChr16g0507681 Helianthus annuus HOM05D001353 ORTHO05D002359 2.6e-22 110.5 277 30.0
AagrBONN_evm.TU.Sc2ySwM_368.691 Anthoceros agrestis HOM05D001353 ORTHO05D002359 3.3e-22 110.2 228 30.3
FAN26G1973 Fragaria x ananassa HOM05D001353 ORTHO05D002359 3.3e-22 110.2 287 28.2
Lsat_1_v5_gn_8_96380 Lactuca sativa HOM05D001353 ORTHO05D002359 3.3e-22 110.2 271 29.2
Sc14g0000410 Simmondsia chinensis HOM05D001353 ORTHO05D002359 3.3e-22 110.2 276 28.3
AL3G48050 Arabidopsis lyrata HOM05D001353 ORTHO05D002359 4.4e-22 109.8 276 28.3
FAN26G1003 Fragaria x ananassa HOM05D001353 ORTHO05D002359 5.7e-22 109.4 287 27.9
Lj2g0022100 Lotus japonicus HOM05D001353 ORTHO05D002359 5.7e-22 109.4 285 28.1
MD02G1058500 Malus domestica HOM05D001353 ORTHO05D002359 5.7e-22 109.4 280 32.5
A07p00600 Brassica napus HOM05D001353 ORTHO05D002359 9.7e-22 108.6 273 27.1
Glyma.01G146600 Glycine max HOM05D001353 ORTHO05D002359 1.3e-21 108.2 274 29.2
arahy.Tifrunner.gnm1.ann1.YNQ283 Arachis hypogaea HOM05D001353 ORTHO05D002359 1.7e-21 107.8 276 27.9
BraA07t27856Z Brassica rapa HOM05D001353 ORTHO05D002359 2.2e-21 107.5 273 26.7
COL.COLO4_34797 Corchorus olitorius HOM05D001353 ORTHO05D002359 2.8e-21 107.1 273 27.5
TPR.G28826 Trifolium pratense HOM05D001353 ORTHO05D002359 2.8e-21 107.1 287 27.5
arahy.Tifrunner.gnm1.ann1.MYDP5Z Arachis hypogaea HOM05D001353 ORTHO05D002359 3.7e-21 106.7 276 28.3
RcHm_v2.0_Chr2g0091381 Rosa chinensis HOM05D001353 ORTHO05D002359 3.7e-21 106.7 289 27.7
Ca_25556_v3 Cicer arietinum L. HOM05D001353 ORTHO05D002359 4.8e-21 106.3 287 27.5
Thhalv10001889m.g Eutrema salsugineum HOM05D001353 ORTHO05D002359 4.8e-21 106.3 280 27.9
FvH4_1g05740 Fragaria vesca HOM05D001353 ORTHO05D002359 6.3e-21 105.9 287 27.5
Lalb_Chr22g0352601 Lupinus albus HOM05D001353 ORTHO05D002359 6.3e-21 105.9 287 26.5
BcaB03g16799 Brassica carinata HOM05D001353 ORTHO05D002359 8.2e-21 105.5 274 27.4
Dinv41647 Davidia involucrata HOM05D001353 ORTHO05D002359 8.2e-21 105.5 273 28.9
PSO210G3200 Papaver somniferum HOM05D001353 ORTHO05D002359 8.2e-21 105.5 301 27.2
Solyc05g018300.3 Solanum lycopersicum HOM05D001353 ORTHO05D002359 8.2e-21 105.5 272 27.2
Sopen05g015040 Solanum pennellii HOM05D001353 ORTHO05D002359 1.1e-20 105.1 272 27.2
CDE05G1729 Ceratophyllum demersum HOM05D001353 ORTHO05D002359 1.8e-20 104.4 272 27.9
Cc06_g10150 Coffea canephora HOM05D001353 ORTHO05D002359 2.4e-20 104.0 271 28.0
Sp3g33360 Schrenkiella parvula HOM05D001353 ORTHO05D002359 2.4e-20 104.0 276 27.2
Sed0028015 Sechium edule HOM05D001353 ORTHO05D002359 2.4e-20 104.0 285 29.5
PSO210G1626 Papaver somniferum HOM05D001353 ORTHO05D002359 3.1e-20 103.6 297 25.9
GSVIVG01015338001 Vitis vinifera HOM05D001353 ORTHO05D002359 3.1e-20 103.6 297 26.9
Lj7C659T7 Lonicera japonica HOM05D001353 ORTHO05D002359 4.1e-20 103.2 301 26.9
Aqoxy7G01509 Aquilegia oxysepala HOM05D001353 ORTHO05D002359 5.3e-20 102.8 276 27.5
DCAR_024695 Daucus carota HOM05D001353 ORTHO05D002359 5.3e-20 102.8 309 26.5
Lalb_Chr24g0397361 Lupinus albus HOM05D001353 ORTHO05D002359 5.3e-20 102.8 300 26.3
Aa31LG8G17000 Aethionema arabicum HOM05D001353 ORTHO05D002359 7.0e-20 102.4 299 24.7
Prupe.7G224500 Prunus persica HOM05D001353 ORTHO05D002359 7.0e-20 102.4 193 36.8
EL10Ac8g18420 Beta vulgaris HOM05D001353 ORTHO05D002359 9.1e-20 102.1 276 27.2
Duzib168G0382 Durio zibethinus HOM05D001353 ORTHO05D002359 9.1e-20 102.1 284 25.4
VMungo0464G0217 Vigna mungo HOM05D001353 ORTHO05D002359 9.1e-20 102.1 285 27.7
Glyma.09G194200 Glycine max HOM05D001353 ORTHO05D002359 1.2e-19 101.7 275 28.4
QL02p043064 Quercus lobata HOM05D001353 ORTHO05D002359 1.2e-19 101.7 273 27.1
CAN.G60.8 Capsicum annuum HOM05D001353 ORTHO05D002359 1.6e-19 101.3 303 27.1
Oeu037985.1 Olea europaea HOM05D001353 ORTHO05D002359 1.6e-19 101.3 273 29.3
Potri.018G084900 Populus trichocarpa HOM05D001353 ORTHO05D002359 1.6e-19 101.3 276 29.3
PGR142G4412 Punica granatum HOM05D001353 ORTHO05D002359 1.6e-19 101.3 274 26.3
ATR0315G080 Amborella trichopoda HOM05D001353 ORTHO05D002359 2.0e-19 100.9 293 25.9
MELO3C024635.2 Cucumis melo HOM05D001353 ORTHO05D002359 2.0e-19 100.9 274 28.1
Medtr6g087000 Medicago truncatula HOM05D001353 ORTHO05D002359 2.0e-19 100.9 287 26.5
Atru.chr7.1420 Acer truncatum HOM05D001353 ORTHO05D002359 2.7e-19 100.5 229 28.8
Phvul.004G169300 Phaseolus vulgaris HOM05D001353 ORTHO05D002359 2.7e-19 100.5 276 27.9
Pp3c16_18360 Physcomitrium patens HOM05D001353 ORTHO05D002359 2.7e-19 100.5 295 26.8
TAR383G0479 Trochodendron aralioides HOM05D001353 ORTHO05D002359 2.7e-19 100.5 285 26.7
Peaxi162Scf00539g00036 Petunia axillaris HOM05D001353 ORTHO05D002359 3.5e-19 100.1 272 27.2
THA.LOC104804013 Tarenaya hassleriana HOM05D001353 ORTHO05D002359 3.5e-19 100.1 304 26.6
Thecc.09G104600 Theobroma cacao HOM05D001353 ORTHO05D002359 3.5e-19 100.1 273 27.5
Nn3g18153 Nelumbo nucifera HOM05D001353 ORTHO05D002359 4.5e-19 99.8 285 27.4
CsaV3_1G019530 Cucumis sativus L. HOM05D001353 ORTHO05D002359 5.9e-19 99.4 312 26.9
Gorai.001G007600 Gossypium raimondii HOM05D001353 ORTHO05D002359 5.9e-19 99.4 285 26.7
Pp3c25_7050 Physcomitrium patens HOM05D001353 ORTHO05D002359 5.9e-19 99.4 292 27.1
Gorai.010G074600 Gossypium raimondii HOM05D001353 ORTHO05D002359 7.7e-19 99.0 274 28.5
Manes.16G111900 Manihot esculenta HOM05D001353 ORTHO05D002359 7.7e-19 99.0 190 32.6
MCO16G530 Micromonas commoda HOM05D000207 ORTHO05D269454 7.7e-19 99.0 213 31.9
Nitab4.5_0000952g0070 Nicotiana tabacum HOM05D001353 ORTHO05D002359 7.7e-19 99.0 305 26.2
SalBow5G1246 Salvia bowleyana HOM05D001353 ORTHO05D002359 7.7e-19 99.0 285 27.0
SalBow5G1616 Salvia bowleyana HOM05D001353 ORTHO05D002359 7.7e-19 99.0 285 27.0
Carub.0003s3431 Capsella rubella HOM05D001353 ORTHO05D002359 1.0e-18 98.6 189 32.3
Ciclev10007299m.g Citrus clementina HOM05D001353 ORTHO05D002359 1.0e-18 98.6 190 32.6
FAN19G3205 Fragaria x ananassa HOM05D001353 ORTHO05D002359 1.0e-18 98.6 294 26.9
FAN23G0742 Fragaria x ananassa HOM05D001353 ORTHO05D002359 1.3e-18 98.2 294 26.9
FAN28G0622 Fragaria x ananassa HOM05D001353 ORTHO05D002359 1.3e-18 98.2 295 26.8
Gohir.D07G007900 Gossypium hirsutum HOM05D001353 ORTHO05D002359 1.3e-18 98.2 285 26.3
Cfa003217 Carpinus fangiana HOM05D001353 ORTHO05D002359 1.7e-18 97.8 273 27.5
AUR62021446 Chenopodium quinoa HOM05D001353 ORTHO05D002359 1.7e-18 97.8 276 26.4
Hma1.2p1_0945F.1_g240170 Hydrangea macrophylla HOM05D001353 ORTHO05D002359 1.7e-18 97.8 190 34.2
Hma1.2p1_0945F.1_g240180 Hydrangea macrophylla HOM05D001353 ORTHO05D002359 1.7e-18 97.8 190 34.2
Gohir.D06G064000 Gossypium hirsutum HOM05D001353 ORTHO05D002359 2.2e-18 97.4 274 28.1
Nitab4.5_0000010g0080 Nicotiana tabacum HOM05D001353 ORTHO05D002359 2.2e-18 97.4 189 32.8
Os02g0281000 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D002359 2.9e-18 97.1 284 25.7
Psat1g045440 Pisum sativum HOM05D001353 ORTHO05D002359 2.9e-18 97.1 277 27.8
SMO146G0147 Selaginella moellendorffii HOM05D001353 ORTHO05D013162 2.9e-18 97.1 263 29.3
CBR_g34531 Chara braunii HOM05D000019 ORTHO05D002359 5.0e-18 96.3 244 29.9
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 5.0e-18 96.3 283 26.9
BcaC06g36681 Brassica carinata HOM05D001353 ORTHO05D002359 6.5e-18 95.9 189 31.2
BolC7t40548H Brassica oleracea HOM05D001353 ORTHO05D002359 6.5e-18 95.9 189 31.2
Sabra18G0073300 Salix brachista HOM05D001353 ORTHO05D002359 6.5e-18 95.9 276 29.0
TWI34G0335 Tripterygium wilfordii HOM05D001353 ORTHO05D002359 6.5e-18 95.9 190 33.7
C07p01090 Brassica napus HOM05D001353 ORTHO05D002359 8.5e-18 95.5 189 31.2
AUR62010934 Chenopodium quinoa HOM05D001353 ORTHO05D002359 1.1e-17 95.1 276 26.1
Migut.K00517 Erythranthe guttata HOM05D001353 ORTHO05D002359 1.1e-17 95.1 189 31.7
Gohir.A06G065400 Gossypium hirsutum HOM05D001353 ORTHO05D002359 1.1e-17 95.1 274 27.7
MSTRG.26370 Avicennia marina HOM05D001353 ORTHO05D002359 1.5e-17 94.7 285 26.3
Ah.09g230830 Amaranthus hybridus HOM05D001353 ORTHO05D002359 1.9e-17 94.4 286 25.9
SGA_v2.0_scaffold19G08755 Striga asiatica HOM05D001353 ORTHO05D002359 1.9e-17 94.4 272 27.2
vmacro10875 Vaccinium macrocarpon HOM05D001353 ORTHO05D002359 1.9e-17 94.4 287 25.8
Cre02.g076900 Chlamydomonas reinhardtii HOM05D000207 ORTHO05D017345 2.5e-17 94.0 258 28.3
Cpa.g.sc40.28 Carica papaya HOM05D001353 ORTHO05D002359 7.2e-17 92.4 189 32.3
CSS0017342 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D002359 9.4e-17 92.0 273 25.6
CBR_g30159 Chara braunii HOM05D000019 ORTHO05D013162 1.6e-16 91.3 239 27.2
Gohir.A07G004300 Gossypium hirsutum HOM05D001353 ORTHO05D002359 2.1e-16 90.9 190 31.6
Actinidia20405 Actinidia chinensis HOM05D001353 ORTHO05D002359 1.0e-15 88.6 290 26.9
Zm00001eb203570 Zea mays HOM05D001353 ORTHO05D002359 3.0e-15 87.0 298 23.8
CDE05G3143 Ceratophyllum demersum HOM05D001353 ORTHO05D002359 8.8e-15 85.5 154 33.1
HPP92_005273 Vanilla planifolia HOM05D001353 ORTHO05D002359 2.0e-14 84.3 189 29.6
AagrBONN_evm.TU.Sc2ySwM_228.5642 Anthoceros agrestis HOM05D012635 ORTHO05D016542 4.8e-13 79.7 150 35.3
MCO13G105 Micromonas commoda HOM05D012635 ORTHO05D016542 1.2e-11 75.1 239 24.3
CsaV3_6G021270 Cucumis sativus L. HOM05D001353 ORTHO05D002359 1.6e-11 74.7 201 28.9
CiPaw.03G227500 Carya illinoinensis HOM05D001353 ORTHO05D002359 7.7e-11 72.4 127 32.3
PRCOL_00002602 Prasinoderma coloniale HOM05D012635 ORTHO05D016542 2.9e-10 70.5 144 30.6
Rhsim05G0043400 Rhododendron simsii HOM05D001353 ORTHO05D002359 4.7e-08 63.2 378 20.4
ECA238G0213 Erigeron canadensis HOM05D000413 ORTHO05D000292 3.0e-07 60.5 117 30.8
MCO04G061 Micromonas commoda HOM05D001353 ORTHO05D013162 3.0e-07 60.5 95 33.7
Phvul.008G065700 Phaseolus vulgaris HOM05D003351 ORTHO05D003806 5.2e-07 59.7 164 31.7
Atru.chr9.1601 Acer truncatum HOM05D000413 ORTHO05D000292 2.0e-06 57.8 121 28.1
Mapoly0031s0150 Marchantia polymorpha HOM05D000413 ORTHO05D000292 4.4e-06 56.6 108 32.4
PRCOL_00005202 Prasinoderma coloniale HOM05D012635 ORTHO05D333615 5.7e-06 56.2 149 24.8
CBR_g50392 Chara braunii HOM05D000413 ORTHO05D000292 7.5e-06 55.8 117 28.2


User provided reference genes

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