Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 9.1e-90 333.6 170 100.0
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 3.2e-34 149.1 134 56.0
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 3.6e-30 135.6 164 44.5
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 1.8e-29 133.3 138 47.8
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 3.1e-29 132.5 142 45.8
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 6.8e-29 131.3 165 43.6
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 1.2e-28 130.6 142 45.8
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 5.8e-28 128.3 138 45.7
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 7.6e-28 127.9 136 46.3
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 7.6e-28 127.9 141 46.8
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.3e-27 127.1 128 47.7
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.7e-27 126.7 124 46.8
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 2.9e-27 125.9 124 46.0
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 2.9e-27 125.9 159 43.4
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 3.8e-27 125.6 127 47.2
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 3.8e-27 125.6 159 44.7
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 4.9e-27 125.2 159 44.7
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 4.9e-27 125.2 121 50.4
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 4.9e-27 125.2 164 44.5
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 6.4e-27 124.8 128 45.3
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 8.4e-27 124.4 148 43.2
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 1.1e-26 124.0 121 50.4
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 1.1e-26 124.0 170 42.4
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 1.4e-26 123.6 128 44.5
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 2.4e-26 122.9 169 40.2
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 2.4e-26 122.9 121 47.9
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 2.4e-26 122.9 148 42.6
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 2.4e-26 122.9 128 46.9
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 3.2e-26 122.5 169 39.6
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 3.2e-26 122.5 148 42.6
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 3.2e-26 122.5 127 45.7
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 4.1e-26 122.1 121 49.6
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 4.1e-26 122.1 121 47.9
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 4.1e-26 122.1 164 41.5
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 4.1e-26 122.1 149 43.0
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 5.4e-26 121.7 121 46.3
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 5.4e-26 121.7 169 39.1
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 5.4e-26 121.7 148 42.6
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 7.1e-26 121.3 128 43.8
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 7.1e-26 121.3 155 43.2
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 7.1e-26 121.3 166 41.0
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 9.2e-26 120.9 121 46.3
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.2e-25 120.6 125 45.6
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 1.2e-25 120.6 164 39.0
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 1.2e-25 120.6 124 43.5
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.2e-25 120.6 124 44.4
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 1.2e-25 120.6 127 46.5
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.2e-25 120.6 127 45.7
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 1.6e-25 120.2 121 47.1
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 2.1e-25 119.8 141 42.6
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 2.1e-25 119.8 151 45.0
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 2.1e-25 119.8 151 45.0
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 2.7e-25 119.4 127 45.7
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 3.5e-25 119.0 159 41.5
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 4.6e-25 118.6 148 39.9
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 4.6e-25 118.6 128 43.0
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 4.6e-25 118.6 127 45.7
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 6.0e-25 118.2 124 42.7
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 7.8e-25 117.9 148 40.5
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 7.8e-25 117.9 169 39.6
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 7.8e-25 117.9 160 40.0
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.0e-24 117.5 141 40.4
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.0e-24 117.5 167 40.7
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.0e-24 117.5 151 43.7
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 1.0e-24 117.5 158 43.0
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.3e-24 117.1 167 41.9
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 1.7e-24 116.7 121 47.9
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.7e-24 116.7 124 46.0
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 1.7e-24 116.7 146 40.4
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 2.3e-24 116.3 161 42.2
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 3.0e-24 115.9 124 46.0
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 3.0e-24 115.9 159 39.0
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 3.0e-24 115.9 124 44.4
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 3.9e-24 115.5 141 41.8
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 3.9e-24 115.5 158 38.6
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 3.9e-24 115.5 120 44.2
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 5.1e-24 115.2 134 42.5
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 6.6e-24 114.8 124 43.5
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 6.6e-24 114.8 138 41.3
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 8.6e-24 114.4 148 39.9
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 1.1e-23 114.0 141 42.6
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 1.1e-23 114.0 129 41.9
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 1.5e-23 113.6 141 41.8
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.5e-23 113.6 159 38.4
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 1.5e-23 113.6 159 39.6
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 1.9e-23 113.2 158 39.2
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 1.9e-23 113.2 141 41.8
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 1.9e-23 113.2 141 41.8
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 1.9e-23 113.2 141 41.1
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 1.9e-23 113.2 125 43.2
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 1.9e-23 113.2 159 38.4
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 2.5e-23 112.8 158 38.6
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 2.5e-23 112.8 142 41.5
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 3.3e-23 112.5 141 40.4
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 4.3e-23 112.1 124 43.5
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 4.3e-23 112.1 127 41.7
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 5.6e-23 111.7 124 41.1
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 7.3e-23 111.3 115 43.5
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 7.3e-23 111.3 141 41.8
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 7.3e-23 111.3 159 40.9
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 7.3e-23 111.3 150 38.7
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.2e-22 110.5 124 41.9
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.2e-22 110.5 134 43.3
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.6e-22 110.2 134 44.0
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.6e-22 110.2 138 39.9
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 1.6e-22 110.2 124 40.3
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 3.6e-22 109.0 124 39.5
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 3.6e-22 109.0 124 40.3
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 3.6e-22 109.0 121 43.8
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 4.7e-22 108.6 127 44.1
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 6.2e-22 108.2 141 40.4
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 8.1e-22 107.8 143 42.0
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 2.4e-21 106.3 119 47.1
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 2.4e-21 106.3 148 37.2
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 6.9e-21 104.8 133 39.1
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 8.9e-21 104.4 164 37.2
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 1.5e-20 103.6 134 44.8
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 2.0e-20 103.2 134 38.8
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 2.6e-20 102.8 164 36.0
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 4.4e-20 102.1 150 38.7
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 5.8e-20 101.7 117 43.6
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 1.3e-19 100.5 123 43.1
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 1.7e-19 100.1 119 44.5
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 2.9e-19 99.4 141 39.0
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 2.9e-19 99.4 141 39.0
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 8.4e-19 97.8 111 41.4
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 1.4e-18 97.1 125 41.6
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 1.9e-18 96.7 106 43.4
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 9.3e-18 94.4 150 34.0
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 1.2e-17 94.0 88 46.6
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 2.7e-17 92.8 113 39.8
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 6.0e-17 91.7 82 56.1
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 6.6e-16 88.2 165 33.9
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 1.9e-15 86.7 66 48.5
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 5.6e-15 85.1 122 41.0
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 4.8e-14 82.0 146 36.3
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 2.4e-13 79.7 111 41.4
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 3.1e-13 79.3 63 52.4
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 2.6e-12 76.3 119 32.8
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 9.9e-12 74.3 63 44.4
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 3.2e-10 69.3 62 56.5
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 5.4e-10 68.6 63 49.2
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 9.3e-10 67.8 65 41.5
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 1.2e-09 67.4 82 50.0
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.1e-09 66.6 48 56.2
MCO05G667 Micromonas commoda HOM05D004294 ORTHO05D004899 2.7e-09 66.2 109 34.9
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 4.6e-09 65.5 47 57.4
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.3e-08 63.9 47 57.4
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 1.5e-07 60.5 103 32.0
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 2.1e-06 56.6 84 35.7
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 3.7e-06 55.8 80 35.0


User provided reference genes

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