Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0030s0014 Marchantia polymorpha HOM05D005280 ORTHO05D006253 3.0e-102 375.9 316 100.0
Pp3c17_8040 Physcomitrium patens HOM05D005280 ORTHO05D006253 2.4e-75 286.6 315 78.4
CBR_g23503 Chara braunii HOM05D005280 ORTHO05D006253 1.3e-68 264.2 314 67.8
AagrBONN_evm.TU.Sc2ySwM_117.3414 Anthoceros agrestis HOM05D005280 ORTHO05D006253 2.4e-67 260.0 308 79.9
PGSC0003DMG400009000 Solanum tuberosum HOM05D005280 ORTHO05D006253 3.9e-62 242.7 316 65.8
PGSC0003DMG400008719 Solanum tuberosum HOM05D005280 ORTHO05D006253 8.7e-62 241.5 316 65.2
Pp3c15_2410 Physcomitrium patens HOM05D005280 ORTHO05D006253 1.1e-61 241.1 303 76.9
Gohir.A10G036800 Gossypium hirsutum HOM05D005280 ORTHO05D006253 1.9e-61 240.4 317 75.4
Solyc03g062940.3 Solanum lycopersicum HOM05D005280 ORTHO05D006253 1.9e-61 240.4 316 64.9
Sopen03g015240 Solanum pennellii HOM05D005280 ORTHO05D006253 1.9e-61 240.4 316 64.9
Peaxi162Scf00871g00047 Petunia axillaris HOM05D005280 ORTHO05D006253 3.3e-61 239.6 316 65.2
EL10Ac9g22853 Beta vulgaris HOM05D005280 ORTHO05D006253 5.7e-61 238.8 318 74.2
CAN.G206.30 Capsicum annuum HOM05D005280 ORTHO05D006253 5.7e-61 238.8 316 65.2
Duzib160G0285 Durio zibethinus HOM05D005280 ORTHO05D006253 5.7e-61 238.8 317 65.0
Gohir.D10G037400 Gossypium hirsutum HOM05D005280 ORTHO05D006253 7.4e-61 238.4 317 74.8
AUR62017603 Chenopodium quinoa HOM05D005280 ORTHO05D006253 9.6e-61 238.0 319 64.3
Thecc.06G170100 Theobroma cacao HOM05D005280 ORTHO05D006253 9.6e-61 238.0 318 73.9
AUR62015144 Chenopodium quinoa HOM05D005280 ORTHO05D006253 1.3e-60 237.7 319 64.3
ECA236G4327 Erigeron canadensis HOM05D005280 ORTHO05D006253 1.6e-60 237.3 316 64.2
SGA_v2.0_scaffold1G00053 Striga asiatica HOM05D005280 ORTHO05D006253 2.8e-60 236.5 315 69.5
Lj6g0027668 Lotus japonicus HOM05D005280 ORTHO05D006253 3.7e-60 236.1 318 64.8
Ah.01g013480 Amaranthus hybridus HOM05D005280 ORTHO05D006253 4.8e-60 235.7 319 63.3
Gorai.011G039400 Gossypium raimondii HOM05D005280 ORTHO05D006253 4.8e-60 235.7 316 74.7
Lsat_1_v5_gn_7_24160 Lactuca sativa HOM05D005280 ORTHO05D006253 4.8e-60 235.7 316 70.3
Lj1A206T60 Lonicera japonica HOM05D005280 ORTHO05D006253 4.8e-60 235.7 317 73.8
Migut.M01035 Erythranthe guttata HOM05D005280 ORTHO05D006253 6.2e-60 235.3 315 72.4
PGR042G3394 Punica granatum HOM05D005280 ORTHO05D006253 6.2e-60 235.3 318 64.8
CARHR028510 Cardamine hirsuta HOM05D005280 ORTHO05D006253 1.8e-59 233.8 317 69.7
Carub.0001s2739 Capsella rubella HOM05D005280 ORTHO05D006253 2.4e-59 233.4 317 67.8
CDE10G0374 Ceratophyllum demersum HOM05D005280 ORTHO05D006253 2.4e-59 233.4 306 75.8
TWI38G0304 Tripterygium wilfordii HOM05D005280 ORTHO05D006253 2.4e-59 233.4 319 63.6
Actinidia39510 Actinidia chinensis HOM05D005280 ORTHO05D006253 3.1e-59 233.0 316 72.2
CANSAT80G2107 Cannabis sativa HOM05D005280 ORTHO05D006253 5.3e-59 232.3 318 74.5
Duzib192G0183 Durio zibethinus HOM05D005280 ORTHO05D006253 5.3e-59 232.3 317 73.5
AL1G42940 Arabidopsis lyrata HOM05D005280 ORTHO05D006253 6.9e-59 231.9 317 74.1
AT1G29260 Arabidopsis thaliana HOM05D005280 ORTHO05D006253 6.9e-59 231.9 317 65.6
Manes.17G056200 Manihot esculenta HOM05D005280 ORTHO05D006253 6.9e-59 231.9 318 63.8
TAR629G2088 Trochodendron aralioides HOM05D005280 ORTHO05D006253 6.9e-59 231.9 144 70.8
BolC3t19816H Brassica oleracea HOM05D005280 ORTHO05D006253 1.2e-58 231.1 317 74.4
MD10G1279400 Malus domestica HOM05D005280 ORTHO05D006253 2.0e-58 230.3 324 62.3
SMO119G0322 Selaginella moellendorffii HOM05D005280 ORTHO05D006253 2.0e-58 230.3 141 74.5
Sc05g0007070 Simmondsia chinensis HOM05D005280 ORTHO05D006253 2.0e-58 230.3 318 62.6
Lalb_Chr20g0117481 Lupinus albus HOM05D005280 ORTHO05D006253 3.4e-58 229.6 319 62.7
Nn1g04427 Nelumbo nucifera HOM05D005280 ORTHO05D006253 3.4e-58 229.6 142 71.8
Prupe.4G062000 Prunus persica HOM05D005280 ORTHO05D006253 7.6e-58 228.4 324 61.4
MD05G1300300 Malus domestica HOM05D005280 ORTHO05D006253 1.0e-57 228.0 326 62.0
Aqoxy170s003 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 6.5e-57 225.3 142 70.4
Aqoxy7G03216 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 6.5e-57 225.3 142 70.4
Haze_06226 Corylus avellana HOM05D005280 ORTHO05D006253 6.5e-57 225.3 319 66.8
QL05p047377 Quercus lobata HOM05D005280 ORTHO05D006253 1.1e-56 224.6 318 62.6
DCAR_007943 Daucus carota HOM05D005280 ORTHO05D006253 4.2e-56 222.6 316 71.8
SEGI_31924 Sequoiadendron giganteum HOM05D005280 ORTHO05D006253 4.2e-56 222.6 315 65.1
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 2.1e-55 220.3 308 63.0
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 2.7e-55 219.9 308 63.0
Potri.004G057600 Populus trichocarpa HOM05D005280 ORTHO05D006253 3.5e-55 219.5 318 67.0
HanXRQChr05g0139841 Helianthus annuus HOM05D005280 ORTHO05D006253 4.6e-55 219.2 306 64.1
SHI28515 Sapria himalayana HOM05D005280 ORTHO05D006253 2.3e-54 216.9 318 61.9
HPP92_008751 Vanilla planifolia HOM05D005280 ORTHO05D006253 3.0e-54 216.5 142 66.9
FAN16G3700 Fragaria x ananassa HOM05D005280 ORTHO05D006253 3.9e-54 216.1 310 62.6
CSS0022801 Camellia sinensis var. sinensis HOM05D005280 ORTHO05D006253 5.1e-54 215.7 305 74.4
MBI05_g10770_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 8.7e-54 214.9 142 67.6
MBI07_g43934_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 2.5e-53 213.4 142 67.6
Cre17.g730200 Chlamydomonas reinhardtii HOM05D005280 ORTHO05D006253 7.4e-53 211.8 309 70.9
PSO229G0003 Papaver somniferum HOM05D005280 ORTHO05D006253 1.3e-52 211.1 142 64.1
PSO675G8759 Papaver somniferum HOM05D005280 ORTHO05D006253 8.2e-52 208.4 142 63.4
Dinv16775 Davidia involucrata HOM05D005280 ORTHO05D006253 2.4e-51 206.8 141 65.2
Cc02_g15040 Coffea canephora HOM05D005280 ORTHO05D006253 3.1e-51 206.5 146 62.3
Medtr2g016160 Medicago truncatula HOM05D005280 ORTHO05D006253 4.1e-51 206.1 143 64.3
Psat1g197880 Pisum sativum HOM05D005280 ORTHO05D006253 4.1e-51 206.1 143 63.6
Ca_00439_v3 Cicer arietinum L. HOM05D005280 ORTHO05D006253 5.3e-51 205.7 143 64.3
Dinv40681 Davidia involucrata HOM05D005280 ORTHO05D006253 5.3e-51 205.7 141 63.1
unitig_699.g19366 Utricularia gibba HOM05D005280 ORTHO05D006253 5.3e-51 205.7 141 63.1
Rhsim02G0143200 Rhododendron simsii HOM05D005280 ORTHO05D006253 9.0e-51 204.9 140 62.1
Hma1.2p1_1912F.1_g307320 Hydrangea macrophylla HOM05D005280 ORTHO05D006253 1.2e-50 204.5 141 62.4
Glyma.13G229400 Glycine max HOM05D005280 ORTHO05D006253 2.0e-50 203.8 143 62.2
FAN11G1284 Fragaria x ananassa HOM05D005280 ORTHO05D006253 2.6e-50 203.4 147 59.9
Ciclev10015974m.g Citrus clementina HOM05D005280 ORTHO05D006253 3.4e-50 203.0 142 62.7
MSTRG.7412 Avicennia marina HOM05D005280 ORTHO05D006253 4.5e-50 202.6 141 63.8
vmacro16064 Vaccinium macrocarpon HOM05D005280 ORTHO05D006253 4.5e-50 202.6 141 62.4
Atru.chr10.1658 Acer truncatum HOM05D005280 ORTHO05D006253 5.9e-50 202.2 142 63.4
Phvul.006G175800 Phaseolus vulgaris HOM05D005280 ORTHO05D006253 5.9e-50 202.2 143 61.5
Sp1g25120 Schrenkiella parvula HOM05D005280 ORTHO05D006253 7.7e-50 201.8 142 62.7
THA.LOC104804949 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 1.0e-49 201.4 142 62.0
arahy.Tifrunner.gnm1.ann1.8U8ZZM Arachis hypogaea HOM05D005280 ORTHO05D006253 1.3e-49 201.1 143 62.2
arahy.Tifrunner.gnm1.ann1.IM81E3 Arachis hypogaea HOM05D005280 ORTHO05D006253 1.3e-49 201.1 143 62.2
Sed0011601 Sechium edule HOM05D005280 ORTHO05D006253 1.7e-49 200.7 141 62.4
VMungo0540G1202 Vigna mungo HOM05D005280 ORTHO05D006253 1.7e-49 200.7 143 61.5
Aa31LG6G6330 Aethionema arabicum HOM05D005280 ORTHO05D006253 2.2e-49 200.3 142 62.0
BcaC01g00082 Brassica carinata HOM05D005280 ORTHO05D006253 2.2e-49 200.3 142 61.3
C03p75590 Brassica napus HOM05D005280 ORTHO05D006253 2.2e-49 200.3 142 61.3
MELO3C007211.2 Cucumis melo HOM05D005280 ORTHO05D006253 2.2e-49 200.3 141 62.4
Thhalv10008237m.g Eutrema salsugineum HOM05D005280 ORTHO05D006253 2.2e-49 200.3 142 61.3
THA.LOC104812639 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 2.2e-49 200.3 141 62.4
Glyma.15G083100 Glycine max HOM05D005280 ORTHO05D006253 2.9e-49 199.9 143 61.5
ClCG01G023770 Citrullus lanatus HOM05D005280 ORTHO05D006253 3.8e-49 199.5 141 62.4
CsaV3_6G050930 Cucumis sativus L. HOM05D005280 ORTHO05D006253 3.8e-49 199.5 141 62.4
FvH4_3g07730 Fragaria vesca HOM05D005280 ORTHO05D006253 3.8e-49 199.5 145 59.3
FAN21G3704 Fragaria x ananassa HOM05D005280 ORTHO05D006253 3.8e-49 199.5 145 59.3
FAN25G0161 Fragaria x ananassa HOM05D005280 ORTHO05D006253 3.8e-49 199.5 145 59.3
RcHm_v2.0_Chr5g0010881 Rosa chinensis HOM05D005280 ORTHO05D006253 3.8e-49 199.5 146 60.3
BcaC05g26943 Brassica carinata HOM05D005280 ORTHO05D006253 5.0e-49 199.1 142 60.6
C05p27910 Brassica napus HOM05D005280 ORTHO05D006253 5.0e-49 199.1 142 60.6
BolC5t31517H Brassica oleracea HOM05D005280 ORTHO05D006253 5.0e-49 199.1 142 60.6
BraA08t34477Z Brassica rapa HOM05D005280 ORTHO05D006253 5.0e-49 199.1 142 60.6
BcaB07g32507 Brassica carinata HOM05D005280 ORTHO05D006253 6.5e-49 198.7 142 59.9
A09p37140 Brassica napus HOM05D005280 ORTHO05D006253 6.5e-49 198.7 142 59.9
BraA09t39230Z Brassica rapa HOM05D005280 ORTHO05D006253 6.5e-49 198.7 142 59.9
Manes.16G040400 Manihot esculenta HOM05D005280 ORTHO05D006253 6.5e-49 198.7 144 61.1
COL.COLO4_31288 Corchorus olitorius HOM05D005280 ORTHO05D006253 2.5e-48 196.8 142 59.2
Sabra04G0037300 Salix brachista HOM05D005280 ORTHO05D006253 2.5e-48 196.8 144 59.7
BcaB03g12145 Brassica carinata HOM05D005280 ORTHO05D006253 3.2e-48 196.4 142 59.9
Cfa000612 Carpinus fangiana HOM05D005280 ORTHO05D006253 3.6e-47 193.0 143 61.5
CiPaw.10G059400 Carya illinoinensis HOM05D005280 ORTHO05D006253 4.6e-47 192.6 143 60.8
PRCOL_00004365 Prasinoderma coloniale HOM05D005280 ORTHO05D006253 3.3e-45 186.4 329 50.8
Zm00001eb238680 Zea mays HOM05D005280 ORTHO05D006253 1.4e-40 171.0 144 51.4
MCO15G120 Micromonas commoda HOM05D005280 ORTHO05D006253 3.2e-40 169.9 110 71.8
Cpa.g.sc7.74 Carica papaya HOM05D005280 ORTHO05D006253 7.9e-39 165.2 315 59.7
Aqoxy1G02047 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 2.6e-37 160.2 104 69.2
A08p25250 Brassica napus HOM05D005280 ORTHO05D006253 4.4e-37 159.5 142 51.4
PSO782G3364 Papaver somniferum HOM05D005280 ORTHO05D006253 1.1e-35 154.8 115 56.5
ATR0706G060 Amborella trichopoda HOM05D005280 ORTHO05D006253 1.4e-35 154.5 111 62.2
Sabra11G0048200 Salix brachista HOM05D005280 ORTHO05D006253 1.5e-34 151.0 277 58.8
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 8.5e-17 92.0 148 34.5
Potri.011G066600 Populus trichocarpa HOM05D005280 ORTHO05D006253 1.5e-16 91.3 207 60.9
MBI16_g15539_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 3.0e-14 83.6 135 33.3
MBI16_g15538_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.5e-13 81.3 144 31.2
TPR.G11693 Trifolium pratense HOM05D005280 ORTHO05D006253 1.5e-13 81.3 48 72.9
FAN14G0286 Fragaria x ananassa HOM05D005280 ORTHO05D019446 1.2e-07 61.6 114 29.8
BcaNung00602 Brassica carinata HOM05D003405 ORTHO05D003920 2.1e-07 60.8 76 38.2
C01p03540 Brassica napus HOM05D003405 ORTHO05D003920 2.1e-07 60.8 76 38.2
BolC1t00343H Brassica oleracea HOM05D003405 ORTHO05D003920 2.1e-07 60.8 76 38.2
BcaNung00601 Brassica carinata HOM05D003405 ORTHO05D003920 2.8e-07 60.5 76 38.2
Lj4g0004391 Lotus japonicus HOM05D003753 ORTHO05D005081 8.0e-07 58.9 136 30.1
Dinv41375 Davidia involucrata HOM05D000140 ORTHO05D000087 1.4e-06 58.2 117 33.3
Os07g0572000 Oryza sativa ssp. japonica HOM05D002943 ORTHO05D002685 1.4e-06 58.2 150 31.3
VMungo1383G1864 Vigna mungo HOM05D005280 ORTHO05D006253 1.4e-06 58.2 44 54.5
Sed0013567 Sechium edule HOM05D000684 ORTHO05D000688 2.3e-06 57.4 134 26.9
A10p10940 Brassica napus HOM05D000645 ORTHO05D000494 5.2e-06 56.2 77 35.1
Aa31LG10G5040 Aethionema arabicum HOM05D000645 ORTHO05D000494 6.8e-06 55.8 75 34.7
AUR62014277 Chenopodium quinoa HOM05D005280 ORTHO05D006253 6.8e-06 55.8 48 52.1
Phvul.008G287000 Phaseolus vulgaris HOM05D003405 ORTHO05D003920 6.8e-06 55.8 73 37.0


User provided reference genes

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