Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 0.0e+00 1143.6 596 100.0
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 5.6e-219 764.6 511 77.1
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 2.5e-211 739.2 519 73.8
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 2.8e-210 735.7 506 75.1
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 1.1e-209 733.8 531 71.9
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 1.4e-209 733.4 553 70.5
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 1.8e-209 733.0 506 74.9
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 2.4e-209 732.6 512 72.5
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 2.4e-209 732.6 510 74.7
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 5.2e-209 731.5 496 75.4
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 8.9e-209 730.7 496 75.4
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 2.0e-208 729.6 538 71.0
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 2.0e-208 729.6 494 74.5
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 2.6e-208 729.2 553 70.2
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 2.6e-208 729.2 502 73.3
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 4.4e-208 728.4 567 68.6
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 5.8e-208 728.0 507 72.2
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 5.8e-208 728.0 546 69.6
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 5.8e-208 728.0 502 74.1
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 5.8e-208 728.0 501 73.7
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 7.6e-208 727.6 499 73.9
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 7.6e-208 727.6 518 72.8
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 1.3e-207 726.9 556 70.0
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 1.3e-207 726.9 556 70.0
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 1.3e-207 726.9 499 73.5
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 1.3e-207 726.9 534 71.0
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 1.7e-207 726.5 538 70.3
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 2.2e-207 726.1 499 73.5
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 2.2e-207 726.1 553 69.1
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 2.9e-207 725.7 507 72.4
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 2.9e-207 725.7 570 67.4
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 2.9e-207 725.7 528 72.5
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 2.9e-207 725.7 502 73.7
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 4.9e-207 724.9 526 70.9
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 4.9e-207 724.9 508 72.2
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 6.4e-207 724.5 499 73.5
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 1.1e-206 723.8 546 70.1
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 1.1e-206 723.8 503 73.6
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 1.1e-206 723.8 491 74.5
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 1.4e-206 723.4 530 71.9
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 2.4e-206 722.6 555 68.6
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 2.4e-206 722.6 507 71.8
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 3.2e-206 722.2 501 73.5
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 4.2e-206 721.8 503 73.4
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 5.4e-206 721.5 546 69.4
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 7.1e-206 721.1 567 66.7
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 7.1e-206 721.1 495 74.3
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 7.1e-206 721.1 502 72.9
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 7.1e-206 721.1 501 73.5
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 9.2e-206 720.7 563 67.0
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 1.2e-205 720.3 567 66.7
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 2.1e-205 719.5 517 70.6
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 2.1e-205 719.5 532 69.2
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 2.7e-205 719.2 518 71.2
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 3.5e-205 718.8 514 72.2
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 4.6e-205 718.4 509 71.9
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 4.6e-205 718.4 514 71.6
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 4.6e-205 718.4 546 67.9
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 6.0e-205 718.0 500 73.8
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 6.0e-205 718.0 488 75.0
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 7.8e-205 717.6 514 71.6
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 1.0e-204 717.2 484 75.4
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 1.3e-204 716.8 486 74.1
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 1.7e-204 716.5 481 74.8
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 2.3e-204 716.1 511 71.4
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 5.1e-204 714.9 550 69.3
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 6.6e-204 714.5 518 70.8
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 8.7e-204 714.1 486 74.1
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 1.1e-203 713.8 551 68.4
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 1.5e-203 713.4 499 72.7
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 1.5e-203 713.4 520 71.7
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 1.5e-203 713.4 510 70.6
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 1.9e-203 713.0 497 73.0
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 1.9e-203 713.0 548 68.6
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 1.9e-203 713.0 488 74.6
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 1.9e-203 713.0 495 72.9
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 2.5e-203 712.6 513 71.7
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 4.3e-203 711.8 505 72.5
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 4.3e-203 711.8 499 73.1
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 9.6e-203 710.7 535 69.7
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 9.6e-203 710.7 498 74.1
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 1.2e-202 710.3 546 68.1
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 2.8e-202 709.1 502 72.7
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 3.6e-202 708.8 502 71.5
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 3.6e-202 708.8 502 71.5
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 1.8e-201 706.4 509 70.9
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 1.8e-201 706.4 549 68.5
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 2.4e-201 706.1 532 69.0
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 4.0e-201 705.3 550 67.8
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 6.9e-201 704.5 502 70.9
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 9.0e-201 704.1 521 70.2
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 4.4e-200 701.8 502 71.5
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 1.7e-199 699.9 507 71.4
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 4.9e-199 698.4 525 69.7
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 1.1e-198 697.2 528 69.1
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 1.2e-197 693.7 511 70.1
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 2.7e-197 692.6 479 74.3
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 3.5e-197 692.2 526 68.6
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 4.6e-197 691.8 512 70.9
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 3.0e-196 689.1 505 70.5
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 8.7e-196 687.6 481 74.4
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.6e-194 683.3 484 72.5
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 1.6e-194 683.3 494 71.5
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 2.1e-194 682.9 458 74.7
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 3.6e-194 682.2 467 74.1
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 6.4e-191 671.4 496 70.4
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 1.5e-184 650.2 438 76.7
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 9.9e-184 647.5 431 77.0
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 4.9e-183 645.2 484 68.6
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 6.0e-181 638.3 434 75.1
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 6.2e-178 628.2 434 73.7
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 8.4e-175 617.8 422 75.1
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 1.8e-172 610.1 640 54.4
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 5.7e-171 605.1 563 59.1
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 9.7e-171 604.4 511 63.0
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 5.9e-168 595.1 429 72.5
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 1.0e-164 584.3 422 71.1
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 6.7e-164 581.6 420 71.4
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 2.2e-162 576.6 392 75.8
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 7.7e-160 568.2 417 69.3
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 1.9e-158 563.5 418 69.6
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 7.9e-157 558.1 423 67.4
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 1.0e-156 557.8 393 72.0
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 3.7e-154 549.3 390 72.6
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 2.1e-149 533.5 407 69.3
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 8.0e-141 505.0 468 59.4
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 4.8e-138 495.7 567 51.9
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 1.8e-129 467.2 440 60.0
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 1.3e-127 461.1 506 53.6
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 2.3e-127 460.3 312 73.4
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 3.6e-125 453.0 348 66.1
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 1.8e-124 450.7 601 45.1
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 4.5e-120 436.0 330 70.0
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 9.5e-118 428.3 298 72.5
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 2.0e-115 420.6 410 58.3
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 3.6e-109 399.8 285 71.2
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 8.3e-106 388.7 279 73.8
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 2.4e-105 387.1 274 70.1
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.1e-100 371.7 257 72.8
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 2.3e-79 300.8 213 72.3
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 3.7e-69 266.9 296 54.4
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 2.5e-65 254.2 484 37.0
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 3.2e-65 253.8 185 67.6
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 1.5e-59 235.0 532 34.0
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 1.4e-57 228.4 172 68.0
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 4.6e-56 223.4 182 65.4
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 1.9e-54 218.0 193 60.6
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 1.4e-47 195.3 144 68.8
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 3.0e-39 167.5 115 74.8
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 3.5e-35 154.1 121 63.6
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 3.6e-32 144.1 113 72.6
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 3.3e-30 137.5 104 66.3
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.3e-29 135.6 113 61.1
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 3.7e-29 134.0 89 70.8
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 1.0e-26 125.9 96 71.9
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 6.5e-26 123.2 94 68.1
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 1.7e-21 108.6 78 75.6
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 1.7e-21 108.6 69 78.3
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 1.1e-20 105.9 103 57.3
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 7.0e-20 103.2 101 54.5
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea HOM05D004179 ORTHO05D005248 2.5e-17 94.7 61 77.0
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 6.8e-15 86.7 53 83.0
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 4.1e-12 77.4 66 60.6
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 1.2e-11 75.9 141 34.8
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 1.1e-09 69.3 93 48.4
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 2.8e-08 64.7 58 56.9
VMungo1215G0907 Vigna mungo HOM05D004179 ORTHO05D020814 5.2e-07 60.5 57 54.4
HanXRQChr04g0106691 Helianthus annuus HOM05D004179 ORTHO05D020814 8.9e-07 59.7 45 57.8
VMungo0720G0416 Vigna mungo HOM05D004179 ORTHO05D020814 1.5e-06 58.9 59 47.5
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 9.8e-06 56.2 35 80.0


User provided reference genes

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