Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 0.0e+00 3256.1 1740 100.0
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 5.7e-147 526.9 897 41.9
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 2.0e-139 501.9 1117 34.8
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 4.0e-132 477.6 1150 35.2
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 1.7e-130 472.2 927 38.1
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 3.0e-127 461.5 885 38.2
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 4.7e-125 454.1 917 37.1
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 4.7e-125 454.1 896 37.7
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 1.2e-123 449.5 926 36.0
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 4.4e-123 447.6 936 36.1
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 9.8e-123 446.4 940 36.5
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 2.2e-122 445.3 937 35.6
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 2.9e-122 444.9 1114 34.2
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 2.9e-122 444.9 1136 34.1
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 1.1e-121 443.0 1082 34.4
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 2.4e-121 441.8 922 36.6
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 5.4e-121 440.7 938 36.2
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 5.4e-121 440.7 955 36.3
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 9.2e-121 439.9 1009 35.0
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 2.0e-120 438.7 918 36.8
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 2.7e-120 438.3 934 36.7
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 3.5e-120 438.0 944 35.3
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 1.3e-119 436.0 923 36.8
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 6.6e-119 433.7 897 36.6
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 8.6e-119 433.3 895 37.0
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 1.5e-118 432.6 1013 34.4
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 1.9e-118 432.2 892 37.3
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 2.5e-118 431.8 1016 33.8
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 3.3e-118 431.4 901 37.4
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 9.5e-118 429.9 955 36.1
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 1.2e-117 429.5 1047 34.8
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 3.1e-116 424.9 1012 33.9
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 6.8e-116 423.7 923 37.1
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 8.9e-116 423.3 1015 34.0
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 2.0e-115 422.2 925 37.1
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 1.3e-114 419.5 894 36.1
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 2.9e-114 418.3 1010 34.2
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 3.7e-114 417.9 929 35.8
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 2.4e-113 415.2 931 36.6
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 2.4e-113 415.2 1077 33.3
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 4.1e-113 414.5 923 36.9
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 4.1e-113 414.5 930 36.0
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 5.4e-113 414.1 989 34.2
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 7.1e-113 413.7 926 36.1
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 9.2e-113 413.3 939 34.1
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 1.2e-112 412.9 913 34.9
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 2.1e-112 412.1 912 35.1
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 6.0e-112 410.6 941 35.4
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 1.0e-111 409.8 910 36.7
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.3e-111 409.5 1139 32.5
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 1.3e-111 409.5 899 36.2
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 3.0e-111 408.3 1129 31.4
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 3.9e-111 407.9 926 36.3
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 8.6e-111 406.8 1089 34.0
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 8.6e-111 406.8 941 35.3
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 1.5e-110 406.0 1098 33.4
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 1.9e-110 405.6 1055 31.3
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 2.1e-109 402.1 910 34.1
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 6.2e-109 400.6 941 35.6
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 8.1e-109 400.2 930 35.8
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 8.1e-109 400.2 1129 32.4
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 4.0e-108 397.9 983 34.3
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 5.2e-108 397.5 946 36.2
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 8.9e-108 396.7 986 34.0
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 2.0e-107 395.6 942 34.2
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 3.8e-106 391.3 928 33.9
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 4.9e-106 391.0 906 36.8
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 1.4e-105 389.4 925 36.2
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 1.2e-104 386.3 919 34.9
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 2.7e-104 385.2 981 34.9
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 4.6e-104 384.4 1025 34.5
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 1.0e-103 383.3 1052 33.4
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 2.3e-103 382.1 924 35.6
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 5.1e-103 380.9 928 34.1
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 2.1e-96 359.0 909 33.6
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 3.5e-96 358.2 902 35.3
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.7e-95 355.9 726 35.0
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 6.6e-95 354.0 939 32.8
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 8.4e-90 337.0 1109 31.0
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 1.9e-89 335.9 927 32.6
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 3.2e-89 335.1 666 37.5
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 4.2e-89 334.7 913 33.5
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 2.1e-88 332.4 901 31.6
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.0e-87 328.6 744 35.5
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 5.6e-86 324.3 924 32.4
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 5.6e-86 324.3 928 31.9
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.6e-85 322.8 899 32.8
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 2.9e-82 312.0 914 31.0
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.2e-81 308.5 928 31.9
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 6.0e-80 304.3 985 28.8
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 3.9e-79 301.6 917 30.5
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.3e-77 296.6 503 41.0
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 1.6e-77 296.2 916 30.0
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 8.2e-77 293.9 914 30.4
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 4.5e-75 288.1 907 29.9
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 7.6e-75 287.3 913 30.0
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 2.9e-74 285.4 916 28.5
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 2.9e-74 285.4 503 39.8
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.8e-74 285.0 926 31.4
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 2.1e-72 279.3 888 29.6
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 2.7e-72 278.9 888 29.5
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 2.7e-72 278.9 493 40.2
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 8.7e-71 273.9 892 29.0
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 8.7e-71 273.9 892 29.0
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 1.9e-70 272.7 645 34.4
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 4.1e-68 265.0 1126 27.8
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 5.7e-62 244.6 620 33.7
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 4.5e-59 235.0 247 52.2
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.4e-57 229.9 649 29.6
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 3.1e-52 212.2 606 30.2
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 2.6e-51 209.1 1261 26.2
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 1.2e-48 200.3 646 30.3
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 1.6e-43 183.3 463 32.0
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 4.5e-43 181.8 296 40.5
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 8.8e-39 167.5 151 55.0
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 6.3e-37 161.4 268 39.2
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 1.1e-33 150.6 191 46.6
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 6.8e-31 141.4 268 35.8
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 4.1e-28 132.1 263 37.3
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 3.0e-23 115.9 235 33.6
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 1.2e-22 114.0 120 52.5
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 3.4e-22 112.5 659 24.9
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 1.4e-20 107.1 192 38.5
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 1.8e-20 106.7 400 26.2
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 5.9e-19 101.7 140 44.3
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 3.6e-16 92.4 240 33.8
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 5.8e-14 85.1 123 39.8
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 7.5e-14 84.7 69 56.5
SEGI_38924 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 1.8e-12 80.1 112 47.3
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 2.4e-12 79.7 207 31.9
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 9.2e-12 77.8 186 34.4
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 2.1e-08 66.6 142 43.7
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 1.8e-07 63.5 128 42.2
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 2.6e-06 59.7 40 75.0
SEGI_25662 Sequoiadendron giganteum HOM05D000285 ORTHO05D011087 9.8e-06 57.8 46 67.4


User provided reference genes

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