Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 8.9e-299 1029.6 571 100.0
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 8.8e-121 438.3 587 42.8
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 8.8e-105 385.2 522 41.6
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 4.9e-95 352.8 601 36.8
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 1.1e-94 351.7 556 36.7
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 2.4e-94 350.5 508 39.4
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 4.1e-94 349.7 548 37.2
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 7.0e-94 349.0 525 38.7
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 9.2e-94 348.6 508 40.0
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 1.6e-93 347.8 567 37.0
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 4.5e-93 346.3 511 38.7
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 1.3e-92 344.7 561 36.7
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 3.8e-92 343.2 508 39.0
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 1.1e-91 341.7 508 39.0
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 2.5e-91 340.5 525 41.1
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 5.6e-91 339.3 583 37.0
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 1.6e-90 337.8 508 37.4
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 2.8e-90 337.0 529 37.8
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 4.7e-90 336.3 522 38.1
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 8.0e-90 335.5 508 40.4
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 1.0e-89 335.1 524 37.8
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 1.4e-89 334.7 541 38.4
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 1.4e-89 334.7 511 38.0
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 2.3e-89 334.0 511 38.7
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 2.3e-89 334.0 510 39.2
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 2.3e-89 334.0 508 38.0
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 5.2e-89 332.8 512 37.9
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 6.8e-89 332.4 524 37.6
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 6.8e-89 332.4 521 37.8
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 8.9e-89 332.0 541 38.4
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 8.9e-89 332.0 556 37.2
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 1.2e-88 331.6 583 36.5
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.2e-88 331.6 583 36.5
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 2.0e-88 330.9 508 38.2
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 2.0e-88 330.9 512 37.9
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 2.6e-88 330.5 512 38.9
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 2.6e-88 330.5 510 37.8
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 3.4e-88 330.1 509 38.5
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 5.7e-88 329.3 553 35.6
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 5.7e-88 329.3 513 38.6
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 7.5e-88 328.9 502 37.8
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 7.5e-88 328.9 520 36.9
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 9.8e-88 328.6 578 36.2
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 1.3e-87 328.2 565 36.5
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 1.3e-87 328.2 519 38.3
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 1.3e-87 328.2 513 37.8
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.7e-87 327.8 583 36.5
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 1.7e-87 327.8 524 37.4
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 2.2e-87 327.4 508 38.0
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 6.4e-87 325.9 575 36.7
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 8.3e-87 325.5 518 37.3
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 1.1e-86 325.1 529 36.7
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 1.8e-86 324.3 525 37.1
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 1.8e-86 324.3 520 37.5
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 2.4e-86 323.9 555 36.4
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 2.4e-86 323.9 602 36.9
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 2.4e-86 323.9 551 36.5
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 2.4e-86 323.9 517 36.8
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 3.2e-86 323.6 583 36.4
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 3.2e-86 323.6 508 36.8
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 4.1e-86 323.2 508 38.4
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 4.1e-86 323.2 512 37.5
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 5.4e-86 322.8 527 36.2
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 9.2e-86 322.0 583 36.2
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 2.0e-85 320.9 511 37.0
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 2.0e-85 320.9 567 34.6
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 2.7e-85 320.5 549 35.2
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 2.7e-85 320.5 517 36.6
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 2.7e-85 320.5 509 37.3
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 5.9e-85 319.3 508 37.0
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 5.9e-85 319.3 544 35.5
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 7.8e-85 318.9 520 37.3
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 1.0e-84 318.5 559 37.4
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 1.0e-84 318.5 517 36.2
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 1.0e-84 318.5 580 35.9
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 1.7e-84 317.8 524 37.2
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 2.3e-84 317.4 517 36.8
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 2.3e-84 317.4 558 37.3
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 3.9e-84 316.6 525 40.4
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 1.1e-83 315.1 527 37.0
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 1.1e-83 315.1 578 35.6
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 1.1e-83 315.1 515 37.3
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 1.9e-83 314.3 568 36.1
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 4.3e-83 313.2 525 40.0
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 7.3e-83 312.4 520 36.2
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 7.3e-83 312.4 521 36.3
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 7.3e-83 312.4 548 35.6
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 1.6e-82 311.2 521 36.3
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 2.1e-82 310.8 518 37.3
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 2.1e-82 310.8 515 36.9
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 2.1e-82 310.8 517 36.9
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 3.6e-82 310.1 525 37.1
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 4.7e-82 309.7 561 35.5
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 8.0e-82 308.9 545 35.8
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 1.0e-81 308.5 520 36.3
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 2.6e-80 303.9 508 37.2
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 2.6e-80 303.9 521 36.5
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 3.4e-80 303.5 498 36.5
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 1.4e-78 298.1 462 38.7
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 7.8e-77 292.4 332 46.4
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 9.8e-72 275.4 439 36.9
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 1.3e-71 275.0 491 36.9
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 4.4e-64 250.0 482 33.0
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 7.6e-64 249.2 277 48.4
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 3.5e-61 240.4 302 43.7
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 3.9e-60 236.9 578 33.9
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 6.6e-60 236.1 302 43.4
Manes.11G095300 Manihot esculenta HOM05D005160 ORTHO05D006127 1.1e-49 202.2 395 31.9
Oeu006646.1 Olea europaea HOM05D005160 ORTHO05D006127 2.2e-47 194.5 417 32.4
CBR_g32587 Chara braunii HOM05D005160 ORTHO05D006127 2.9e-47 194.1 345 34.5
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 6.4e-47 193.0 385 33.0
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 1.4e-46 191.8 484 30.8
Lalb_Chr01g0001791 Lupinus albus HOM05D005160 ORTHO05D006127 2.1e-45 188.0 258 43.4
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 7.9e-45 186.0 343 33.8
AL7G44960 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 1.5e-43 181.8 355 33.8
MCO08G169 Micromonas commoda HOM05D005160 ORTHO05D006127 2.0e-40 171.4 344 31.4
Cpa.g.sc37.161 Carica papaya HOM05D005160 ORTHO05D006127 9.9e-40 169.1 322 32.9
Manes.05G150701 Manihot esculenta HOM05D005160 ORTHO05D006127 3.8e-39 167.2 322 32.3
Manes.07G080900 Manihot esculenta HOM05D005160 ORTHO05D006127 3.8e-39 167.2 322 32.6
AagrBONN_evm.TU.Sc2ySwM_228.1713 Anthoceros agrestis HOM05D022446 ORTHO05D006127 8.4e-39 166.0 565 26.5
CANSAT54G2532 Cannabis sativa HOM05D005160 ORTHO05D006127 9.3e-38 162.5 362 30.7
arahy.Tifrunner.gnm1.ann1.IE9R9X Arachis hypogaea HOM05D005160 ORTHO05D006127 1.3e-36 158.7 349 32.4
arahy.Tifrunner.gnm1.ann1.JXV2U6 Arachis hypogaea HOM05D005160 ORTHO05D006127 1.1e-35 155.6 350 31.4
SEGI_18476 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 4.0e-33 147.1 188 43.6
BraA08t34366Z Brassica rapa HOM05D005160 ORTHO05D006127 6.9e-33 146.4 323 31.3
Cre09.g390467 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 4.2e-30 137.1 374 31.3
Lj9A392T37 Lonicera japonica HOM05D005160 ORTHO05D006127 5.5e-30 136.7 161 45.3
Lj9A392T36 Lonicera japonica HOM05D005160 ORTHO05D006127 3.0e-28 131.0 230 38.7
Cre14.g617800 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 5.9e-24 116.7 364 27.5
PRCOL_00003313 Prasinoderma coloniale HOM05D005160 ORTHO05D006127 1.0e-23 115.9 529 24.8
Cre06.g278550 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 2.2e-23 114.8 404 26.5
Cpa.g.sc37.160 Carica papaya HOM05D005160 ORTHO05D006127 4.1e-17 94.0 167 37.7
HPP92_025488 Vanilla planifolia HOM05D005160 ORTHO05D006127 5.3e-17 93.6 117 44.4
Migut.N03290 Erythranthe guttata HOM05D005160 ORTHO05D006127 5.0e-07 60.5 86 39.5
Mapoly0029s0041 Marchantia polymorpha HOM05D002512 ORTHO05D002660 6.5e-07 60.1 219 26.9
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 1.4e-06 58.9 253 27.7
CBR_g50441 Chara braunii HOM05D003356 ORTHO05D004362 2.5e-06 58.2 264 25.4
CBR_g546 Chara braunii HOM05D005032 ORTHO05D006268 2.5e-06 58.2 126 27.0
CDE02G2974 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 9.4e-06 56.2 164 26.8
Zm00001eb245170 Zea mays HOM05D005032 ORTHO05D006268 9.4e-06 56.2 222 26.6


User provided reference genes

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