Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 3.0e-143 511.9 273 100.0
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 8.8e-95 350.9 262 69.8
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 9.7e-94 347.4 271 67.9
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 5.3e-92 341.7 262 65.6
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 2.2e-90 336.3 272 64.0
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 8.3e-85 317.8 262 64.1
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 1.2e-83 313.9 267 62.2
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 2.0e-83 313.2 267 62.2
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 3.5e-83 312.4 266 61.3
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 5.9e-83 311.6 265 62.6
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.0e-82 310.8 265 61.1
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.0e-82 310.8 265 61.1
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 1.3e-82 310.5 266 60.9
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 2.3e-82 309.7 266 60.9
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 2.3e-82 309.7 265 60.8
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 2.3e-82 309.7 266 60.9
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 2.9e-82 309.3 265 60.4
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 3.8e-82 308.9 266 59.4
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 3.8e-82 308.9 267 62.2
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 5.0e-82 308.5 267 60.3
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 8.6e-82 307.8 265 60.8
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 1.1e-81 307.4 267 60.7
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 1.5e-81 307.0 266 60.5
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 1.5e-81 307.0 267 60.3
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 1.5e-81 307.0 265 59.6
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 1.9e-81 306.6 266 61.7
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 1.9e-81 306.6 265 60.4
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 1.9e-81 306.6 267 60.7
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 2.5e-81 306.2 266 59.4
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 2.5e-81 306.2 265 59.6
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 3.3e-81 305.8 265 60.0
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 4.2e-81 305.4 271 59.8
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 4.2e-81 305.4 266 60.5
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 5.5e-81 305.1 265 60.4
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 9.5e-81 304.3 267 62.5
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 9.5e-81 304.3 265 60.0
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 9.5e-81 304.3 265 60.0
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 1.2e-80 303.9 264 60.6
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 1.2e-80 303.9 265 59.2
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 1.6e-80 303.5 266 59.8
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 1.6e-80 303.5 266 59.8
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 1.6e-80 303.5 266 59.8
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 2.1e-80 303.1 262 60.7
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 2.1e-80 303.1 267 59.9
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 2.1e-80 303.1 266 60.2
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.8e-80 302.8 276 58.7
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 3.6e-80 302.4 265 59.2
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 3.6e-80 302.4 267 59.2
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 4.7e-80 302.0 267 59.9
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 4.7e-80 302.0 267 59.9
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 6.1e-80 301.6 265 59.2
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 8.0e-80 301.2 266 58.6
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 8.0e-80 301.2 267 59.6
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.0e-79 300.8 265 58.9
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 1.0e-79 300.8 267 59.9
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 1.0e-79 300.8 267 61.0
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 1.0e-79 300.8 265 59.6
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 1.4e-79 300.4 267 59.9
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 1.4e-79 300.4 265 58.5
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 1.4e-79 300.4 266 60.2
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 1.4e-79 300.4 266 59.4
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 1.4e-79 300.4 265 59.6
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 1.4e-79 300.4 270 57.8
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 1.4e-79 300.4 266 59.4
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 1.4e-79 300.4 266 60.2
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 1.8e-79 300.1 267 57.7
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 3.0e-79 299.3 267 59.2
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 3.0e-79 299.3 267 58.4
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 3.0e-79 299.3 266 59.4
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 3.0e-79 299.3 266 59.4
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 3.0e-79 299.3 266 59.0
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 4.0e-79 298.9 267 58.8
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 4.0e-79 298.9 267 59.2
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 5.2e-79 298.5 267 58.8
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 5.2e-79 298.5 267 58.8
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 5.2e-79 298.5 277 57.8
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 6.8e-79 298.1 266 59.8
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 6.8e-79 298.1 266 59.8
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 6.8e-79 298.1 267 60.3
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 8.9e-79 297.7 266 59.4
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 8.9e-79 297.7 266 59.0
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 1.2e-78 297.4 266 57.1
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 1.2e-78 297.4 265 57.7
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 1.2e-78 297.4 267 60.3
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 1.5e-78 297.0 266 59.8
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 1.5e-78 297.0 266 58.6
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 2.0e-78 296.6 270 59.6
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 2.0e-78 296.6 265 57.7
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 2.0e-78 296.6 266 56.8
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 2.6e-78 296.2 265 58.9
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 2.6e-78 296.2 265 58.9
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 3.4e-78 295.8 267 58.4
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 3.4e-78 295.8 266 59.8
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 4.4e-78 295.4 270 59.6
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 5.7e-78 295.0 265 59.2
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 1.3e-77 293.9 272 59.2
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 1.3e-77 293.9 262 58.8
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.7e-77 293.5 265 58.9
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 2.2e-77 293.1 265 58.1
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 2.8e-77 292.7 267 56.9
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 3.7e-77 292.4 266 57.5
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 4.9e-77 292.0 266 56.4
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 6.3e-77 291.6 266 58.3
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 6.3e-77 291.6 282 56.0
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 8.3e-77 291.2 269 60.2
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 8.3e-77 291.2 264 58.0
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 1.4e-76 290.4 298 55.7
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 2.4e-76 289.7 267 56.6
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 7.0e-76 288.1 267 58.8
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 1.2e-75 287.3 265 58.1
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 1.6e-75 287.0 265 58.9
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 1.0e-74 284.3 280 53.6
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 8.6e-74 281.2 308 51.3
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 8.6e-74 281.2 266 56.0
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 2.8e-72 276.2 267 54.3
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 6.1e-72 275.0 265 57.0
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 6.8e-71 271.6 329 48.6
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 4.4e-70 268.9 253 55.7
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 1.3e-69 267.3 271 55.0
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 3.7e-69 265.8 316 49.7
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 1.9e-68 263.5 264 51.9
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 9.2e-68 261.2 264 51.5
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 4.6e-67 258.8 360 44.4
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 3.0e-66 256.1 263 54.4
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 1.2e-64 250.8 265 50.9
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 4.3e-57 225.7 248 52.4
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 2.6e-54 216.5 208 56.2
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 5.8e-54 215.3 248 50.8
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 2.2e-53 213.4 175 64.0
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 2.2e-53 213.4 175 64.0
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 1.1e-52 211.1 275 47.3
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 2.4e-52 209.9 253 50.6
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 4.1e-52 209.1 275 46.9
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 4.1e-52 209.1 161 64.6
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 7.1e-52 208.4 252 50.0
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 7.8e-51 204.9 275 46.5
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 1.5e-49 200.7 275 45.8
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 1.9e-49 200.3 275 45.1
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 2.8e-48 196.4 274 47.1
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 6.2e-48 195.3 253 49.8
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 3.8e-45 186.0 411 34.8
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 1.9e-44 183.7 219 49.3
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 4.2e-44 182.6 225 52.0
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 1.3e-42 177.6 130 73.1
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 2.3e-42 176.8 249 44.6
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 2.8e-40 169.9 273 42.1
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 3.6e-40 169.5 135 63.7
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.4e-39 167.5 265 39.6
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 2.2e-37 160.2 131 64.9
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 1.7e-34 150.6 273 38.8
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 2.3e-34 150.2 131 58.0
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 3.9e-34 149.4 136 59.6
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 5.1e-34 149.1 243 39.9
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 5.1e-34 149.1 148 54.7
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 9.6e-33 144.8 96 72.9
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.8e-31 140.6 100 72.0
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.2e-29 133.7 130 56.2
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 2.9e-29 133.3 262 34.7
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 1.1e-28 131.3 271 34.7
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 2.7e-27 126.7 289 31.5
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 9.0e-23 111.7 161 44.7
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 2.2e-21 107.1 142 45.8
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 8.2e-16 88.6 59 72.9
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 1.4e-15 87.8 70 64.3
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 3.1e-15 86.7 152 38.2
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 5.3e-15 85.9 68 64.7
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 1.6e-11 74.3 135 36.3
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 2.3e-10 70.5 47 74.5
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 3.0e-10 70.1 47 72.3
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 3.0e-10 70.1 47 72.3
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 6.7e-10 68.9 47 72.3
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 1.1e-09 68.2 70 51.4
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 1.5e-09 67.8 47 72.3
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 3.3e-09 66.6 59 52.5
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 9.7e-09 65.1 65 50.8
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 9.7e-09 65.1 65 50.8
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 1.3e-08 64.7 45 68.9
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 4.8e-08 62.8 65 49.2
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.8e-07 60.8 65 47.7
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 4.1e-07 59.7 73 43.8
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 2.6e-06 57.0 58 51.7


User provided reference genes

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