Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 2.5e-178 628.6 308 100.0
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 5.0e-131 471.5 308 74.4
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 1.9e-130 469.5 308 73.1
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 5.4e-125 451.4 303 72.6
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 6.6e-123 444.5 306 69.9
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 7.3e-122 441.0 306 69.6
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 1.2e-121 440.3 306 68.0
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 6.2e-121 438.0 306 69.3
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 8.1e-121 437.6 306 69.0
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 1.1e-120 437.2 306 68.6
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 1.1e-120 437.2 306 69.6
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 2.4e-120 436.0 306 67.6
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 2.4e-120 436.0 306 69.0
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 3.1e-120 435.6 306 69.3
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 3.1e-120 435.6 306 67.6
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 3.1e-120 435.6 306 69.3
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 4.0e-120 435.3 306 68.3
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 5.2e-120 434.9 306 67.6
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 5.2e-120 434.9 306 67.6
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 1.2e-119 433.7 306 68.3
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 1.5e-119 433.3 306 68.0
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 1.5e-119 433.3 306 68.3
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 2.6e-119 432.6 306 67.6
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 2.6e-119 432.6 306 69.3
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 3.4e-119 432.2 306 68.3
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 4.4e-119 431.8 306 68.3
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 5.8e-119 431.4 306 68.0
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 7.6e-119 431.0 306 68.6
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 7.6e-119 431.0 306 68.6
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 7.6e-119 431.0 306 68.0
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 7.6e-119 431.0 306 68.3
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 7.6e-119 431.0 306 68.3
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 9.9e-119 430.6 306 68.6
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 9.9e-119 430.6 306 68.0
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 9.9e-119 430.6 306 68.3
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 9.9e-119 430.6 306 68.0
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.3e-118 430.3 306 68.0
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 2.2e-118 429.5 306 68.3
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 2.9e-118 429.1 306 68.0
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 2.9e-118 429.1 306 68.6
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 2.9e-118 429.1 306 68.3
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 3.8e-118 428.7 306 68.3
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 3.8e-118 428.7 306 68.6
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 4.9e-118 428.3 306 68.0
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 4.9e-118 428.3 306 67.6
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 6.4e-118 427.9 306 67.6
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 8.4e-118 427.6 306 67.0
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 1.1e-117 427.2 306 67.3
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 1.4e-117 426.8 307 69.7
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 1.4e-117 426.8 306 67.6
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 1.4e-117 426.8 306 67.6
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 1.9e-117 426.4 306 66.3
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 3.2e-117 425.6 306 67.3
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 3.2e-117 425.6 306 67.3
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 3.2e-117 425.6 306 67.0
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 4.1e-117 425.2 306 67.6
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 7.1e-117 424.5 306 66.3
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 7.1e-117 424.5 303 68.0
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 7.1e-117 424.5 306 67.0
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 7.1e-117 424.5 306 66.3
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 9.2e-117 424.1 303 68.6
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 1.2e-116 423.7 306 67.0
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 1.6e-116 423.3 308 66.9
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 1.6e-116 423.3 306 67.0
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 2.1e-116 422.9 306 66.3
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 2.7e-116 422.5 306 66.7
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 3.5e-116 422.2 306 66.0
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 3.5e-116 422.2 306 66.0
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 6.0e-116 421.4 306 67.3
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 6.0e-116 421.4 303 67.7
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 1.0e-115 420.6 306 67.6
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 1.0e-115 420.6 306 66.7
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 1.3e-115 420.2 306 65.0
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.7e-115 419.9 303 67.0
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 1.7e-115 419.9 311 65.9
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 2.3e-115 419.5 306 64.7
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 3.0e-115 419.1 306 67.3
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 3.0e-115 419.1 306 66.7
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 3.0e-115 419.1 306 64.7
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 3.0e-115 419.1 304 66.8
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 3.9e-115 418.7 306 67.3
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 5.1e-115 418.3 307 66.8
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 8.7e-115 417.5 306 66.7
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 8.7e-115 417.5 306 67.0
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 1.1e-114 417.2 308 65.6
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.1e-114 417.2 331 63.1
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 1.5e-114 416.8 308 65.3
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 1.9e-114 416.4 306 65.7
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 3.3e-114 415.6 306 66.0
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 7.3e-114 414.5 306 63.4
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 1.2e-113 413.7 306 65.4
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 1.2e-113 413.7 308 64.9
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 2.8e-113 412.5 306 66.0
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 4.7e-113 411.8 309 64.4
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 6.2e-113 411.4 303 65.3
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 3.1e-112 409.1 310 64.2
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 9.0e-112 407.5 309 62.8
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 2.0e-111 406.4 309 64.1
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 2.0e-111 406.4 327 62.1
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 3.4e-111 405.6 306 65.4
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 5.8e-111 404.8 373 56.3
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 1.3e-110 403.7 309 63.1
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 2.2e-110 402.9 307 63.8
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 2.2e-110 402.9 309 62.8
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 4.9e-110 401.7 307 62.5
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 1.4e-109 400.2 308 63.0
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 4.2e-109 398.7 308 62.0
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 4.2e-109 398.7 308 62.0
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 4.2e-109 398.7 308 62.0
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 2.1e-108 396.4 306 63.1
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 2.1e-108 396.4 306 63.4
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 1.5e-106 390.2 306 62.1
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 9.6e-106 387.5 306 62.1
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 3.6e-105 385.6 306 61.8
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 3.6e-105 385.6 306 61.8
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 2.0e-103 379.8 391 51.7
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 2.9e-102 375.9 306 60.5
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 9.6e-90 334.3 306 56.5
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 4.5e-87 325.5 245 65.3
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 1.1e-77 294.3 247 59.9
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 1.2e-71 274.2 227 59.9
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 2.1e-68 263.5 226 59.3
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 3.0e-67 259.6 209 61.2
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 9.1e-64 248.1 231 55.0
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 5.2e-59 232.3 176 67.0
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 1.8e-56 223.8 145 74.5
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 2.2e-54 216.9 151 66.9
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 2.4e-48 196.8 184 55.4
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 7.2e-45 185.3 152 55.9
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 1.4e-43 181.0 154 56.5
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 3.7e-41 172.9 308 33.8
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 1.1e-40 171.4 300 39.7
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 1.8e-40 170.6 309 36.2
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 3.8e-38 162.9 80 90.0
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 8.6e-38 161.8 83 85.5
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 4.2e-37 159.5 79 87.3
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 1.2e-36 157.9 89 78.7
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 1.4e-35 154.5 80 81.2
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 5.6e-29 132.5 142 44.4
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 5.8e-26 122.5 126 51.6
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 7.5e-26 122.1 86 62.8
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 2.2e-25 120.6 126 47.6
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 3.5e-23 113.2 58 84.5
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.1e-21 108.2 207 36.2
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 3.6e-20 103.2 64 73.4
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 6.8e-19 99.0 295 27.1
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 6.6e-14 82.4 55 63.6
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 3.3e-13 80.1 191 30.9


User provided reference genes

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