Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 0.0e+00 3876.6 2092 100.0
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 0.0e+00 1276.9 2157 41.5
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 8.9e-304 1048.1 2147 36.1
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 2.4e-293 1013.4 2025 38.3
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 6.6e-291 1005.4 2157 35.9
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 2.3e-288 996.9 2164 34.4
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 6.4e-286 988.8 2007 36.6
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 1.3e-275 954.5 2156 34.1
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 2.5e-274 950.3 2148 34.5
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 1.6e-273 947.6 2176 34.9
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 8.1e-273 945.3 2148 35.2
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 2.4e-272 943.7 2152 34.8
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 3.1e-272 943.3 2168 33.7
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 5.3e-272 942.6 2152 34.3
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 1.2e-271 941.4 2187 34.6
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 5.8e-271 939.1 2146 34.5
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 2.2e-270 937.2 2132 34.9
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 2.9e-270 936.8 2172 34.4
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 6.4e-270 935.6 1631 41.7
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 1.6e-268 931.0 2127 34.8
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 4.6e-268 929.5 2146 34.5
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 1.7e-267 927.5 2161 34.2
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 1.1e-266 924.9 2152 34.8
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 1.5e-266 924.5 2166 34.6
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 2.5e-266 923.7 2167 33.6
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 3.3e-266 923.3 2134 34.3
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 5.6e-266 922.5 2145 34.2
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 1.3e-265 921.4 2150 34.0
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 4.8e-265 919.5 2157 34.4
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 6.2e-265 919.1 2151 35.3
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 2.4e-264 917.1 2143 34.0
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 2.4e-264 917.1 2152 34.2
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 1.5e-263 914.4 2135 33.3
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 2.6e-263 913.7 2158 34.2
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 2.6e-263 913.7 2146 33.9
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 4.5e-263 912.9 2132 35.2
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 7.6e-263 912.1 2150 33.9
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 9.9e-263 911.8 2145 33.8
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 1.9e-261 907.5 2146 33.6
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 3.2e-261 906.7 2154 35.3
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 1.6e-260 904.4 1676 37.5
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 2.7e-260 903.7 2161 34.3
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 4.6e-260 902.9 2135 33.8
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 6.0e-260 902.5 2142 33.8
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 3.0e-259 900.2 2157 34.6
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 8.7e-259 898.7 2138 33.9
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 1.5e-258 897.9 2124 33.7
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 7.4e-258 895.6 2153 34.1
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 1.6e-257 894.4 2123 33.7
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 1.8e-256 891.0 2133 34.1
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 1.8e-256 891.0 2205 33.4
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 9.0e-256 888.6 2138 34.0
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 2.0e-255 887.5 2169 34.2
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 1.7e-254 884.4 2144 32.9
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 2.9e-254 883.6 2158 33.3
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 6.4e-254 882.5 2127 33.4
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 8.4e-254 882.1 2124 33.3
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 3.2e-253 880.2 2156 33.2
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 7.9e-252 875.5 2149 33.6
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 2.5e-250 870.5 2166 33.4
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 4.3e-250 869.8 2209 33.5
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 1.3e-249 868.2 2248 32.5
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 3.1e-248 863.6 2164 32.7
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 1.5e-247 861.3 1990 35.0
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 5.8e-247 859.4 2119 33.4
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 2.9e-246 857.1 2169 33.0
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 8.4e-246 855.5 2179 33.8
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 7.1e-245 852.4 2135 33.2
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 2.1e-244 850.9 2130 33.2
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 1.3e-243 848.2 2223 32.3
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 3.9e-243 846.7 2152 34.0
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 5.1e-243 846.3 2149 32.6
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 1.9e-242 844.3 2136 33.0
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 2.5e-242 844.0 2138 33.1
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 4.1e-240 836.6 2136 32.7
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 9.0e-240 835.5 2270 32.6
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 3.8e-238 830.1 2139 32.6
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 6.1e-236 822.8 2164 32.0
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 1.0e-235 822.0 2295 32.2
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 3.0e-235 820.5 2139 32.1
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 2.0e-234 817.8 2145 32.6
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 4.3e-234 816.6 2036 34.5
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 2.8e-233 813.9 2135 32.2
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 1.0e-230 805.4 2155 32.1
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 5.0e-230 803.1 2163 32.0
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 8.5e-230 802.4 1808 35.5
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 2.5e-229 800.8 2159 31.8
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 3.2e-229 800.4 2143 32.2
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 3.6e-228 797.0 2147 32.0
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 4.7e-228 796.6 2169 31.9
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 2.2e-225 787.7 2181 31.7
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 2.2e-225 787.7 2133 32.4
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 3.1e-224 783.9 1945 32.2
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 1.5e-223 781.6 2070 31.7
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 3.8e-222 776.9 2166 33.2
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 2.7e-212 744.2 1806 33.7
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 3.8e-206 723.8 2060 31.4
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 2.1e-204 718.0 1913 31.1
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 1.4e-203 715.3 2135 30.8
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 5.4e-192 676.8 1552 34.7
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 2.5e-189 667.9 1568 33.8
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 1.2e-172 612.5 1429 33.6
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.6e-167 595.5 1429 32.5
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 9.9e-162 576.2 1737 31.8
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 4.6e-159 567.4 1296 33.5
TAR623G0710 Trochodendron aralioides HOM05D000764 ORTHO05D004953 2.9e-153 548.1 1309 35.0
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 2.7e-151 541.6 1485 31.8
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 2.1e-135 488.8 1217 32.5
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 2.4e-131 475.3 1010 34.0
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 3.4e-114 418.3 1078 30.8
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 5.1e-110 404.4 788 34.3
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 8.5e-97 360.5 796 34.3
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 1.6e-95 356.3 793 33.3
AUR62019165 Chenopodium quinoa HOM05D000764 ORTHO05D004953 2.3e-94 352.4 1320 28.8
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 1.6e-90 339.7 867 30.9
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-80 306.6 1097 29.1
SEGI_19391 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 1.5e-80 306.6 385 46.0
Migut.L00380 Erythranthe guttata HOM05D000764 ORTHO05D004953 2.2e-76 292.7 714 34.2
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 4.7e-71 275.0 615 31.7
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 1.8e-70 273.1 1011 27.1
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 1.0e-65 257.3 745 30.5
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 2.0e-61 243.0 443 37.9
SalBow6G2556 Salvia bowleyana HOM05D000764 ORTHO05D004953 8.6e-57 227.6 610 31.8
Os05g0447580 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 2.7e-50 206.1 343 37.9
Lj2A763G34 Lonicera japonica HOM05D000764 ORTHO05D004953 3.3e-48 199.1 407 35.4
Actinidia15647 Actinidia chinensis HOM05D000764 ORTHO05D004953 7.8e-42 177.9 208 43.3
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 1.3e-41 177.2 338 35.2
SHI31298 Sapria himalayana HOM05D000764 ORTHO05D004953 1.9e-40 173.3 554 30.3
CDE10G0477 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.9e-35 156.8 788 27.8
SEGI_38078 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 3.2e-35 156.0 157 51.6
VMungo1080G1824 Vigna mungo HOM05D000764 ORTHO05D004953 9.3e-35 154.5 154 48.1
Hma1.2p1_0449F.1_g155100 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 1.3e-33 150.6 197 39.6
COL.COLO4_07282 Corchorus olitorius HOM05D000764 ORTHO05D004953 1.3e-31 144.1 159 45.9
Cpa.g.sc119.45 Carica papaya HOM05D000764 ORTHO05D004953 1.8e-30 140.2 228 38.6
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 2.4e-30 139.8 319 33.2
Aqoxy6G02541 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 4.5e-29 135.6 242 38.0
vmacro06920 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 1.7e-28 133.7 146 46.6
CiPaw.14G136600 Carya illinoinensis HOM05D000764 ORTHO05D004953 9.0e-22 111.3 239 35.6
VMungo1080G1023 Vigna mungo HOM05D000764 ORTHO05D004953 1.2e-21 110.9 198 36.4
CDE10G1322 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.0e-20 107.8 124 42.7
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 8.4e-20 104.8 164 39.0
CDE10G0100 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.2e-18 100.9 256 32.4
CAN.G610.44 Capsicum annuum HOM05D000764 ORTHO05D004953 1.8e-17 97.1 240 32.5
VMungo1080G0389 Vigna mungo HOM05D000764 ORTHO05D004953 1.8e-17 97.1 450 30.9
CAN.G1237.46 Capsicum annuum HOM05D000764 ORTHO05D004953 6.3e-15 88.6 232 30.2
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 9.0e-14 84.7 72 55.6
CAN.G1237.22 Capsicum annuum HOM05D000764 ORTHO05D004953 2.2e-12 80.1 81 48.1
CAN.G1237.21 Capsicum annuum HOM05D000764 ORTHO05D004953 1.9e-11 77.0 190 32.1
SHI31300 Sapria himalayana HOM05D000764 ORTHO05D004953 3.2e-11 76.3 57 59.6
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 2.3e-09 70.1 281 28.1
CBR_g38302 Chara braunii HOM05D000019 ORTHO05D000353 3.9e-09 69.3 169 31.4
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 5.1e-09 68.9 120 35.8
CAN.G1237.45 Capsicum annuum HOM05D000764 ORTHO05D004953 8.7e-09 68.2 197 32.5
SHI31294 Sapria himalayana HOM05D000764 ORTHO05D004953 2.8e-07 63.2 106 34.0


User provided reference genes

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