Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 0.0e+00 2166.7 1111 100.0
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 5.7e-23 114.4 205 39.0
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 2.1e-22 112.5 217 35.9
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 4.8e-22 111.3 246 31.3
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 1.3e-19 103.2 220 32.7
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 1.3e-19 103.2 220 32.7
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 5.5e-18 97.8 258 29.8
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 9.3e-18 97.1 267 30.0
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 9.3e-18 97.1 240 29.6
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 9.3e-18 97.1 240 29.6
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 9.3e-18 97.1 240 29.6
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 9.3e-18 97.1 240 29.6
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 9.3e-18 97.1 243 31.7
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 1.6e-17 96.3 240 29.6
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.6e-17 96.3 218 33.9
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 1.6e-17 96.3 238 29.4
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 2.1e-17 95.9 218 33.0
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 2.7e-17 95.5 213 32.9
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 2.7e-17 95.5 238 29.4
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 2.7e-17 95.5 189 32.8
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 3.5e-17 95.1 239 28.9
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 4.6e-17 94.7 237 30.4
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 4.6e-17 94.7 239 32.2
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 6.1e-17 94.4 240 31.2
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 1.3e-16 93.2 239 28.9
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.3e-16 93.2 239 32.2
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 1.3e-16 93.2 236 29.7
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 1.8e-16 92.8 238 28.6
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 1.8e-16 92.8 226 31.4
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 2.3e-16 92.4 237 30.4
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 2.3e-16 92.4 239 31.8
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 2.3e-16 92.4 215 32.6
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 3.0e-16 92.0 238 31.5
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 3.0e-16 92.0 239 31.8
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 3.0e-16 92.0 239 31.8
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 3.0e-16 92.0 239 32.2
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 3.0e-16 92.0 239 31.4
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 3.0e-16 92.0 219 31.5
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 3.0e-16 92.0 238 28.6
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 5.1e-16 91.3 249 30.1
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 5.1e-16 91.3 217 32.3
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 6.7e-16 90.9 240 30.8
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 8.7e-16 90.5 238 28.6
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 8.7e-16 90.5 219 32.0
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 1.5e-15 89.7 227 30.8
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 1.5e-15 89.7 241 28.6
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 1.9e-15 89.4 234 31.2
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 2.5e-15 89.0 239 31.4
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 2.5e-15 89.0 218 31.2
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 2.5e-15 89.0 219 29.7
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 2.5e-15 89.0 240 30.8
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 3.3e-15 88.6 218 31.2
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 3.3e-15 88.6 240 30.0
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 3.3e-15 88.6 309 27.8
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 4.3e-15 88.2 240 29.6
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 4.3e-15 88.2 377 26.8
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 4.3e-15 88.2 217 30.9
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 9.7e-15 87.0 219 32.4
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 9.7e-15 87.0 216 31.0
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 1.3e-14 86.7 217 32.7
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 1.3e-14 86.7 217 30.9
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 1.3e-14 86.7 240 31.7
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 1.3e-14 86.7 252 30.6
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 1.6e-14 86.3 222 32.0
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 1.6e-14 86.3 243 29.6
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 1.6e-14 86.3 216 30.6
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.6e-14 86.3 216 31.0
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 1.6e-14 86.3 216 31.0
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 1.6e-14 86.3 250 30.4
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 1.6e-14 86.3 220 30.5
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 2.2e-14 85.9 243 29.6
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 2.2e-14 85.9 262 29.4
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 2.8e-14 85.5 279 28.3
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 2.8e-14 85.5 220 30.9
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 2.8e-14 85.5 238 29.8
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 2.8e-14 85.5 218 31.2
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 2.8e-14 85.5 210 32.4
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 3.7e-14 85.1 215 29.8
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 4.8e-14 84.7 222 30.6
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 6.3e-14 84.3 272 27.9
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 6.3e-14 84.3 219 31.5
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 6.3e-14 84.3 219 30.1
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 6.3e-14 84.3 243 30.0
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 8.2e-14 84.0 218 31.2
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 8.2e-14 84.0 219 32.0
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 8.2e-14 84.0 221 30.3
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 8.2e-14 84.0 219 30.6
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 8.2e-14 84.0 268 28.7
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 8.2e-14 84.0 219 32.4
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 1.1e-13 83.6 277 28.5
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 1.4e-13 83.2 220 29.5
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 1.8e-13 82.8 219 31.5
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 2.4e-13 82.4 219 31.5
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 4.1e-13 81.6 219 29.7
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 4.1e-13 81.6 404 24.0
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 5.3e-13 81.3 219 30.1
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 6.9e-13 80.9 219 30.6
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 9.0e-13 80.5 219 29.7
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 2.0e-12 79.3 261 28.7
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 2.6e-12 79.0 218 30.3
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 2.6e-12 79.0 218 30.3
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 4.5e-12 78.2 163 35.0
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 5.9e-12 77.8 249 28.1
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 5.9e-12 77.8 386 24.4
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 5.9e-12 77.8 438 25.6
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 5.9e-12 77.8 493 25.8
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 7.7e-12 77.4 219 29.7
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 5.0e-11 74.7 473 24.3
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 5.0e-11 74.7 370 25.7
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 1.1e-10 73.6 221 28.1
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.1e-10 73.6 297 28.3
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 1.2e-09 70.1 166 31.3
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 1.6e-09 69.7 157 33.8
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 1.6e-09 69.7 356 26.1
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 1.6e-09 69.7 162 34.6
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 3.6e-09 68.6 451 24.2
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 1.4e-08 66.6 161 32.3
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 5.1e-08 64.7 363 24.8
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 1.1e-07 63.5 121 33.1
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 6.3e-06 57.8 156 27.6


User provided reference genes

Program Settings