Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0029s0029 Marchantia polymorpha HOM05D005270 ORTHO05D006239 9.8e-124 446.8 226 100.0
Pp3c15_6350 Physcomitrium patens HOM05D005270 ORTHO05D006239 1.5e-71 273.5 203 65.5
AagrBONN_evm.TU.Sc2ySwM_369.586 Anthoceros agrestis HOM05D005270 ORTHO05D006239 5.6e-71 271.6 203 64.5
MBI04_g37584_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 4.0e-69 265.4 203 63.5
GSVIVG01001274001 Vitis vinifera HOM05D005270 ORTHO05D006239 2.0e-68 263.1 203 63.1
GSVIVG01004774001 Vitis vinifera HOM05D005270 ORTHO05D006239 2.0e-68 263.1 203 63.1
TAR629G2769 Trochodendron aralioides HOM05D005270 ORTHO05D006239 5.8e-68 261.5 203 63.1
CANSAT21G2027 Cannabis sativa HOM05D005270 ORTHO05D006239 2.9e-67 259.2 203 63.1
Potri.001G120400 Populus trichocarpa HOM05D005270 ORTHO05D006239 2.9e-67 259.2 203 62.1
PSO017G6911 Papaver somniferum HOM05D005270 ORTHO05D006239 4.9e-67 258.5 203 62.1
Aqoxy7G00723 Aquilegia oxysepala HOM05D005270 ORTHO05D006239 8.4e-67 257.7 203 61.1
HPP92_022434 Vanilla planifolia HOM05D005270 ORTHO05D006239 8.4e-67 257.7 203 61.1
PSO170G6680 Papaver somniferum HOM05D005270 ORTHO05D006239 1.1e-66 257.3 203 62.6
Atru.chr9.1379_Atru.chr9.1380 Acer truncatum HOM05D005270 ORTHO05D006239 1.4e-66 256.9 203 61.6
TWI81G0718 Tripterygium wilfordii HOM05D005270 ORTHO05D006239 1.4e-66 256.9 203 61.1
CiPaw.11G150400 Carya illinoinensis HOM05D005270 ORTHO05D006239 1.9e-66 256.5 203 61.6
Sed0019529 Sechium edule HOM05D005270 ORTHO05D006239 1.9e-66 256.5 201 61.7
Zm00001eb172680 Zea mays HOM05D005270 ORTHO05D006239 1.9e-66 256.5 203 59.6
Eucgr.D02030 Eucalyptus grandis HOM05D005270 ORTHO05D006239 2.4e-66 256.1 203 62.6
Sc01g0009340 Simmondsia chinensis HOM05D005270 ORTHO05D006239 2.4e-66 256.1 203 61.1
PGR031G3926 Punica granatum HOM05D005270 ORTHO05D006239 4.2e-66 255.4 203 61.1
QL12p013868 Quercus lobata HOM05D005270 ORTHO05D006239 4.2e-66 255.4 202 60.9
ClCG01G003850 Citrullus lanatus HOM05D005270 ORTHO05D006239 5.5e-66 255.0 203 61.1
ATR1152G004 Amborella trichopoda HOM05D005270 ORTHO05D006239 7.1e-66 254.6 203 61.6
CSS0023019 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 7.1e-66 254.6 203 60.1
CSS0046114 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 7.1e-66 254.6 203 60.1
COL.COLO4_37215 Corchorus olitorius HOM05D005270 ORTHO05D006239 7.1e-66 254.6 203 60.6
MD06G1067000 Malus domestica HOM05D005270 ORTHO05D006239 9.3e-66 254.2 203 61.1
Rhsim07G0104300 Rhododendron simsii HOM05D005270 ORTHO05D006239 9.3e-66 254.2 203 60.1
MELO3C005559.2 Cucumis melo HOM05D005270 ORTHO05D006239 1.2e-65 253.8 203 60.6
Gohir.D03G160700 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.2e-65 253.8 203 59.6
Hma1.2p1_1414F.1_g281890 Hydrangea macrophylla HOM05D005270 ORTHO05D006239 1.2e-65 253.8 203 60.1
Sabra01G0092800 Salix brachista HOM05D005270 ORTHO05D006239 1.2e-65 253.8 203 62.1
Manes.01G076600 Manihot esculenta HOM05D005270 ORTHO05D006239 1.6e-65 253.4 203 61.1
Lsat_1_v5_gn_6_90321 Lactuca sativa HOM05D005270 ORTHO05D006239 2.1e-65 253.1 203 61.1
Lj2A211T58 Lonicera japonica HOM05D005270 ORTHO05D006239 2.1e-65 253.1 203 61.6
Duzib068G0557 Durio zibethinus HOM05D005270 ORTHO05D006239 2.7e-65 252.7 203 60.1
Gohir.A03G010000 Gossypium hirsutum HOM05D005270 ORTHO05D006239 2.7e-65 252.7 203 60.1
SalBow1G0839 Salvia bowleyana HOM05D005270 ORTHO05D006239 2.7e-65 252.7 203 60.1
Actinidia27450 Actinidia chinensis HOM05D005270 ORTHO05D006239 3.5e-65 252.3 203 60.6
vmacro14106 Vaccinium macrocarpon HOM05D005270 ORTHO05D006239 4.6e-65 251.9 203 59.6
CDE12G0422 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 6.0e-65 251.5 203 59.1
Prupe.5G075500 Prunus persica HOM05D005270 ORTHO05D006239 6.0e-65 251.5 203 61.1
Dinv21601 Davidia involucrata HOM05D005270 ORTHO05D006239 7.9e-65 251.1 203 60.1
HanXRQChr03g0087851 Helianthus annuus HOM05D005270 ORTHO05D006239 7.9e-65 251.1 203 60.1
MSTRG.25537 Avicennia marina HOM05D005270 ORTHO05D006239 1.0e-64 250.8 203 59.6
Cc08_g12920 Coffea canephora HOM05D005270 ORTHO05D006239 1.0e-64 250.8 203 59.6
Thecc.03G257000 Theobroma cacao HOM05D005270 ORTHO05D006239 1.0e-64 250.8 203 59.1
Carub.0001s1190 Capsella rubella HOM05D005270 ORTHO05D006239 1.3e-64 250.4 204 61.3
CARHR012530 Cardamine hirsuta HOM05D005270 ORTHO05D006239 1.3e-64 250.4 204 61.3
Glyma.05G056400 Glycine max HOM05D005270 ORTHO05D006239 1.3e-64 250.4 203 61.1
arahy.Tifrunner.gnm1.ann1.9F7ELE Arachis hypogaea HOM05D005270 ORTHO05D006239 1.8e-64 250.0 203 60.6
Ca_25339_v3 Cicer arietinum L. HOM05D005270 ORTHO05D006239 1.8e-64 250.0 203 60.1
CsaV3_5G003980 Cucumis sativus L. HOM05D005270 ORTHO05D006239 1.8e-64 250.0 203 59.6
Phvul.003G218000 Phaseolus vulgaris HOM05D005270 ORTHO05D006239 1.8e-64 250.0 203 60.1
Ciclev10020501m.g Citrus clementina HOM05D005270 ORTHO05D006239 2.3e-64 249.6 203 59.1
Solyc08g079070.2 Solanum lycopersicum HOM05D005270 ORTHO05D006239 2.3e-64 249.6 203 59.6
Sopen08g027530 Solanum pennellii HOM05D005270 ORTHO05D006239 2.3e-64 249.6 203 59.6
Gohir.D09G190100 Gossypium hirsutum HOM05D005270 ORTHO05D006239 3.0e-64 249.2 203 58.6
Gorai.006G212700 Gossypium raimondii HOM05D005270 ORTHO05D006239 3.0e-64 249.2 203 58.6
Oeu038010.1 Olea europaea HOM05D005270 ORTHO05D006239 3.0e-64 249.2 203 59.1
unitig_0.g1234 Utricularia gibba HOM05D005270 ORTHO05D006239 3.0e-64 249.2 203 59.1
VMungo0251G3554 Vigna mungo HOM05D005270 ORTHO05D006239 3.0e-64 249.2 203 61.1
AL1G23510 Arabidopsis lyrata HOM05D005270 ORTHO05D006239 3.9e-64 248.8 204 61.8
Psat4g070360 Pisum sativum HOM05D005270 ORTHO05D006239 3.9e-64 248.8 203 60.6
Gohir.A09G195500 Gossypium hirsutum HOM05D005270 ORTHO05D006239 5.1e-64 248.4 203 58.6
Peaxi162Scf00002g00815 Petunia axillaris HOM05D005270 ORTHO05D006239 5.1e-64 248.4 203 60.1
Actinidia05188 Actinidia chinensis HOM05D005270 ORTHO05D006239 6.7e-64 248.1 203 59.1
Migut.E01048 Erythranthe guttata HOM05D005270 ORTHO05D006239 6.7e-64 248.1 203 59.6
C05p11010 Brassica napus HOM05D005270 ORTHO05D006239 8.7e-64 247.7 204 60.8
PGSC0003DMG400004791 Solanum tuberosum HOM05D005270 ORTHO05D006239 8.7e-64 247.7 203 59.1
CAN.G1217.18 Capsicum annuum HOM05D000486 ORTHO05D000375 1.1e-63 247.3 201 59.2
FvH4_5g00280 Fragaria vesca HOM05D005270 ORTHO05D006239 1.1e-63 247.3 203 59.1
FAN08G1405 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.1e-63 247.3 203 59.1
Medtr4g101620 Medicago truncatula HOM05D005270 ORTHO05D006239 1.1e-63 247.3 203 59.6
RcHm_v2.0_Chr7g0202331 Rosa chinensis HOM05D005270 ORTHO05D006239 1.1e-63 247.3 203 59.1
FAN13G2928 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.5e-63 246.9 203 58.6
Sp1g10840 Schrenkiella parvula HOM05D005270 ORTHO05D006239 1.5e-63 246.9 204 60.8
Aa31LG1G2400 Aethionema arabicum HOM05D005270 ORTHO05D006239 1.9e-63 246.5 203 60.1
AT1G12230 Arabidopsis thaliana HOM05D005270 ORTHO05D006239 1.9e-63 246.5 204 60.3
BraA06t24120Z Brassica rapa HOM05D005270 ORTHO05D006239 1.9e-63 246.5 204 60.3
Glyma.17G138600 Glycine max HOM05D005270 ORTHO05D006239 1.9e-63 246.5 203 60.6
SGA_v2.0_scaffold144G35994 Striga asiatica HOM05D005270 ORTHO05D003965 1.9e-63 246.5 201 59.2
A06p09330 Brassica napus HOM05D005270 ORTHO05D006239 2.5e-63 246.1 204 60.3
BolC5t29844H Brassica oleracea HOM05D005270 ORTHO05D006239 2.5e-63 246.1 204 60.3
CBR_g37411 Chara braunii HOM05D005270 ORTHO05D006239 2.5e-63 246.1 203 60.1
TPR.G37612 Trifolium pratense HOM05D005270 ORTHO05D006239 3.3e-63 245.7 203 60.1
arahy.Tifrunner.gnm1.ann1.VW53Z5 Arachis hypogaea HOM05D005270 ORTHO05D006239 4.3e-63 245.4 203 59.6
Duzib205G1833 Durio zibethinus HOM05D005270 ORTHO05D006239 4.3e-63 245.4 206 58.3
ECA240G0014 Erigeron canadensis HOM05D000201 ORTHO05D006239 4.3e-63 245.4 202 58.4
Thhalv10007790m.g Eutrema salsugineum HOM05D005270 ORTHO05D006239 4.3e-63 245.4 204 59.8
FAN18G1040 Fragaria x ananassa HOM05D005270 ORTHO05D006239 7.4e-63 244.6 203 58.6
THA.LOC104809459 Tarenaya hassleriana HOM05D005270 ORTHO05D006239 2.1e-62 243.0 203 59.6
FAN04G3018 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.8e-62 242.7 204 57.8
Lj4g0020394 Lotus japonicus HOM05D005270 ORTHO05D006239 3.7e-62 242.3 203 59.6
Lalb_Chr05g0225581 Lupinus albus HOM05D005270 ORTHO05D006239 3.7e-62 242.3 203 59.6
DCAR_006814 Daucus carota HOM05D005270 ORTHO05D006239 5.3e-61 238.4 203 57.6
EL10Ac5g13010 Beta vulgaris HOM05D005270 ORTHO05D006239 2.9e-59 232.6 208 56.7
Dinv39103 Davidia involucrata HOM05D000201 ORTHO05D001515 2.5e-58 229.6 191 58.6
Nitab4.5_0009175g0010 Nicotiana tabacum HOM05D005270 ORTHO05D006239 1.5e-55 220.3 207 55.1
AUR62007475 Chenopodium quinoa HOM05D005270 ORTHO05D006239 1.8e-53 213.4 180 58.3
Cpa.g.sc29.127 Carica papaya HOM05D005270 ORTHO05D006239 1.2e-52 210.7 302 41.7
Nitab4.5_0000993g0070 Nicotiana tabacum HOM05D005270 ORTHO05D006239 1.4e-50 203.8 203 51.2
Gorai.N027100 Gossypium raimondii HOM05D005270 ORTHO05D006239 4.6e-49 198.7 164 56.1
SalBow1G5553 Salvia bowleyana HOM05D005270 ORTHO05D006239 3.3e-39 166.0 144 55.6
BcaC05g25195 Brassica carinata HOM05D005270 ORTHO05D006239 2.2e-38 163.3 204 46.1
CDE04G2727 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 5.0e-35 152.1 209 40.2
DCAR_004923 Daucus carota HOM05D005270 ORTHO05D006239 2.7e-33 146.4 182 44.5
SEGI_03700 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 8.2e-30 134.8 114 58.8
Atru.chr9.1383 Acer truncatum HOM05D005270 ORTHO05D006239 7.7e-28 128.3 114 57.9
Haze_07851 Corylus avellana HOM05D005270 ORTHO05D006239 1.7e-27 127.1 213 36.2
AUR62039933 Chenopodium quinoa HOM05D005270 ORTHO05D006239 4.7e-25 119.0 114 55.3
SEGI_05849 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 3.7e-22 109.4 74 70.3
Mapoly0029s0033 Marchantia polymorpha HOM05D005270 ORTHO05D006239 3.1e-21 106.3 53 100.0
Cre01.g032650 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 5.9e-20 102.1 196 32.7
Psat5g235160 Pisum sativum HOM05D005270 ORTHO05D006239 3.2e-18 96.3 73 57.5
Psat5g232960 Pisum sativum HOM05D005270 ORTHO05D006239 9.4e-18 94.7 73 56.2
Cre14.g630847 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 1.6e-17 94.0 192 33.3
Ca_29061_v3 Cicer arietinum L. HOM05D001546 ORTHO05D002908 2.3e-16 90.1 196 29.6
PRCOL_00004111 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 5.7e-15 85.5 197 28.4
MCO13G140 Micromonas commoda HOM05D005270 ORTHO05D006239 9.1e-13 78.2 123 31.7
PRCOL_00004269 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 2.7e-12 76.6 121 35.5
BcaC07g41719 Brassica carinata HOM05D005270 ORTHO05D039702 9.4e-10 68.2 82 48.8
BolC8t52299H Brassica oleracea HOM05D005270 ORTHO05D039702 9.4e-10 68.2 82 48.8
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 1.2e-09 67.8 67 46.3
MBI15_g47610_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 1.6e-09 67.4 65 52.3
MBI14_g06401_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 4.7e-09 65.9 51 58.8


User provided reference genes

Program Settings