Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 0.0e+00 1382.9 700 100.0
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 1.6e-153 547.4 417 67.1
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 1.0e-147 528.1 402 67.2
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 1.0e-147 528.1 462 61.0
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 1.3e-147 527.7 428 64.7
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 1.9e-146 523.9 453 61.4
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 3.3e-146 523.1 428 62.6
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 4.3e-146 522.7 430 63.7
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 4.3e-146 522.7 406 65.3
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 9.7e-146 521.5 419 64.2
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 3.7e-145 519.6 475 58.9
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 3.7e-145 519.6 426 63.8
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 4.8e-145 519.2 430 63.5
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 4.8e-145 519.2 421 63.4
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 8.2e-145 518.5 450 60.9
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.1e-144 518.1 442 60.2
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 1.8e-144 517.3 411 65.2
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 1.8e-144 517.3 433 61.9
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 1.8e-144 517.3 553 52.6
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 2.4e-144 516.9 422 62.3
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 2.4e-144 516.9 449 62.1
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 3.1e-144 516.5 424 63.7
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 6.9e-144 515.4 448 60.3
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 9.1e-144 515.0 563 51.9
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 2.0e-143 513.8 478 57.7
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 2.6e-143 513.5 411 64.2
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 2.6e-143 513.5 432 61.8
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 3.4e-143 513.1 415 64.1
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 4.5e-143 512.7 440 61.1
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 4.5e-143 512.7 406 65.0
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 5.9e-143 512.3 422 62.3
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 5.9e-143 512.3 406 64.3
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 7.7e-143 511.9 486 57.8
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 7.7e-143 511.9 567 51.9
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 1.0e-142 511.5 403 64.5
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 1.3e-142 511.1 401 64.3
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 1.7e-142 510.8 436 61.9
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 1.7e-142 510.8 456 59.9
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 2.2e-142 510.4 402 65.2
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 2.2e-142 510.4 453 59.2
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 2.9e-142 510.0 420 61.4
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 2.9e-142 510.0 474 58.9
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 2.9e-142 510.0 405 64.7
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 3.8e-142 509.6 422 62.1
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 3.8e-142 509.6 445 59.3
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 3.8e-142 509.6 445 59.3
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 3.8e-142 509.6 441 61.7
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 5.0e-142 509.2 421 62.7
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 5.0e-142 509.2 422 62.1
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 5.0e-142 509.2 422 62.1
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 5.0e-142 509.2 556 52.5
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 5.0e-142 509.2 512 54.5
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 5.0e-142 509.2 452 59.7
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 6.5e-142 508.8 393 66.7
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 6.5e-142 508.8 393 66.7
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 8.5e-142 508.4 404 64.9
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 8.5e-142 508.4 391 66.2
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 8.5e-142 508.4 451 59.2
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 1.1e-141 508.1 406 63.8
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 1.1e-141 508.1 405 65.2
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 1.1e-141 508.1 482 56.8
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 1.4e-141 507.7 458 59.4
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.9e-141 507.3 424 62.3
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 1.9e-141 507.3 445 60.4
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 2.5e-141 506.9 499 55.5
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 2.5e-141 506.9 499 55.5
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 2.5e-141 506.9 499 55.5
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 2.5e-141 506.9 499 55.5
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 2.5e-141 506.9 460 58.5
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 3.2e-141 506.5 439 59.2
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 3.2e-141 506.5 418 62.4
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 3.2e-141 506.5 396 65.7
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 4.2e-141 506.1 520 55.2
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 4.2e-141 506.1 403 64.0
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 4.2e-141 506.1 427 61.8
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 7.2e-141 505.4 449 58.8
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 9.4e-141 505.0 431 59.6
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 9.4e-141 505.0 368 69.3
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 1.2e-140 504.6 462 59.3
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.2e-140 504.6 446 59.4
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 1.6e-140 504.2 395 64.3
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 1.6e-140 504.2 436 59.6
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 2.1e-140 503.8 556 52.7
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 2.1e-140 503.8 410 63.4
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 2.1e-140 503.8 437 60.6
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 2.7e-140 503.4 408 62.7
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 2.7e-140 503.4 436 59.2
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 3.6e-140 503.1 402 63.9
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 3.6e-140 503.1 390 65.9
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 4.6e-140 502.7 570 51.2
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 4.6e-140 502.7 419 63.5
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 4.6e-140 502.7 401 63.1
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 1.0e-139 501.5 442 60.0
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 1.0e-139 501.5 432 61.8
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 1.0e-139 501.5 447 59.1
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 1.4e-139 501.1 435 60.2
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 1.4e-139 501.1 548 53.3
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 1.8e-139 500.7 441 59.6
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 2.3e-139 500.4 445 60.2
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 3.0e-139 500.0 548 51.8
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 3.0e-139 500.0 389 66.1
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 3.9e-139 499.6 404 62.1
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 6.7e-139 498.8 577 49.9
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 8.8e-139 498.4 451 58.8
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 8.8e-139 498.4 379 66.2
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 1.1e-138 498.0 517 52.0
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 1.5e-138 497.7 449 58.8
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.5e-138 497.7 446 58.7
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 2.0e-138 497.3 403 64.0
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 3.3e-138 496.5 407 63.1
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 4.4e-138 496.1 516 54.1
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 5.7e-138 495.7 408 61.8
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 5.7e-138 495.7 499 54.3
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 7.4e-138 495.4 403 64.3
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 7.4e-138 495.4 374 67.1
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 9.7e-138 495.0 411 61.6
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 9.7e-138 495.0 542 51.1
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 2.2e-137 493.8 423 60.3
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 1.8e-136 490.7 403 62.0
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 3.1e-136 490.0 423 59.3
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 6.9e-136 488.8 404 61.9
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 6.9e-136 488.8 437 59.0
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 9.1e-136 488.4 405 61.5
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 1.2e-135 488.0 403 62.3
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 3.4e-135 486.5 458 56.1
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 4.5e-135 486.1 405 61.2
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 5.9e-135 485.7 553 50.1
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.3e-134 484.6 405 61.2
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 2.2e-134 483.8 405 61.2
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 2.9e-134 483.4 405 61.0
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 3.2e-133 479.9 478 54.8
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 7.4e-130 468.8 463 54.9
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 7.4e-130 468.8 359 64.9
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 9.7e-130 468.4 405 60.0
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 1.4e-128 464.5 356 65.2
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 5.3e-128 462.6 432 58.3
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 5.3e-128 462.6 403 60.8
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 7.5e-122 442.2 359 64.6
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 1.4e-120 438.0 303 69.6
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 1.6e-119 434.5 354 63.6
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 5.5e-117 426.0 362 59.4
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 2.8e-113 413.7 366 60.1
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 5.9e-103 379.4 367 58.0
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 6.2e-92 342.8 400 49.0
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 1.1e-77 295.4 209 67.9
AagrBONN_evm.TU.Sc2ySwM_344.3442 Anthoceros agrestis HOM05D003880 ORTHO05D004959 2.1e-76 291.2 218 67.4
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 7.1e-72 276.2 197 67.5
FAN04G1012 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.2e-63 248.8 193 65.8
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 2.1e-63 248.1 180 66.1
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 5.8e-58 229.9 356 37.1
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 5.1e-54 216.9 159 64.8
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 7.4e-53 213.0 156 65.4
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 7.4e-53 213.0 156 65.4
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 1.1e-48 199.1 169 58.0
Cre02.g095350 Chlamydomonas reinhardtii HOM05D003880 ORTHO05D004959 3.2e-48 197.6 185 51.4
Pp3c15_5240 Physcomitrium patens HOM05D003880 ORTHO05D004959 3.0e-46 191.0 281 38.4
HPP92_027627 Vanilla planifolia HOM05D003880 ORTHO05D004959 5.8e-42 176.8 136 66.9
HPP92_019377 Vanilla planifolia HOM05D003880 ORTHO05D004959 4.8e-36 157.1 131 64.1
Pp3c4_20480 Physcomitrium patens HOM05D003880 ORTHO05D004959 6.5e-33 146.7 110 62.7
Mapoly0080s0005 Marchantia polymorpha HOM05D003880 ORTHO05D004959 1.4e-30 139.0 208 37.0
BolC5t31452H Brassica oleracea HOM05D003880 ORTHO05D004959 1.5e-26 125.6 106 60.4
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 1.8e-22 112.1 178 39.3
BcaB05g25101 Brassica carinata HOM05D003880 ORTHO05D019999 2.0e-21 108.6 119 47.1
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.2e-18 99.4 88 56.8
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 2.2e-17 95.1 83 54.2
Oeu021226.1 Olea europaea HOM05D003880 ORTHO05D019999 1.1e-16 92.8 96 51.0
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 1.4e-16 92.4 83 53.0
BcaB08g34411 Brassica carinata HOM05D003880 ORTHO05D004959 1.0e-14 86.3 136 39.7
HPP92_027628 Vanilla planifolia HOM05D003880 ORTHO05D019999 2.3e-14 85.1 110 43.6
BcaB07g33153 Brassica carinata HOM05D003880 ORTHO05D019999 6.3e-12 77.0 88 47.7
PRCOL_00005076 Prasinoderma coloniale HOM05D003880 ORTHO05D333288 3.5e-10 71.2 194 29.4
Lsat_1_v5_gn_1_10160 Lactuca sativa HOM05D003880 ORTHO05D019999 5.0e-09 67.4 39 79.5
BcaB02g09679 Brassica carinata HOM05D003880 ORTHO05D019999 1.9e-08 65.5 80 45.0


User provided reference genes

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