Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0028s0141 Marchantia polymorpha HOM05D005943 ORTHO05D007328 5.7e-98 360.9 182 100.0
Pp3c25_690 Physcomitrium patens HOM05D005943 ORTHO05D007328 1.0e-91 340.1 182 91.2
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 1.2e-87 326.6 182 87.9
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 1.2e-87 326.6 182 88.5
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 1.6e-87 326.2 182 89.6
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 2.6e-87 325.5 182 87.4
TWI56G0702 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 4.5e-87 324.7 182 86.8
Potri.005G023600 Populus trichocarpa HOM05D005943 ORTHO05D007328 1.0e-86 323.6 182 86.8
Potri.013G013700 Populus trichocarpa HOM05D005943 ORTHO05D007328 1.7e-86 322.8 182 86.3
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 2.2e-86 322.4 182 86.3
CANSAT35G1584 Cannabis sativa HOM05D005943 ORTHO05D007328 2.2e-86 322.4 182 86.3
Ciclev10002634m.g Citrus clementina HOM05D005943 ORTHO05D007328 2.2e-86 322.4 182 86.3
Cc02_g34350 Coffea canephora HOM05D005943 ORTHO05D007328 2.2e-86 322.4 182 85.7
Eucgr.L02935 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.2e-86 322.4 176 88.6
HanXRQChr11g0339821 Helianthus annuus HOM05D005943 ORTHO05D007328 2.9e-86 322.0 182 87.4
QL03p019642 Quercus lobata HOM05D005943 ORTHO05D007328 2.9e-86 322.0 181 87.3
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 5.0e-86 321.2 182 86.3
Duzib177G0451 Durio zibethinus HOM05D005943 ORTHO05D007328 6.5e-86 320.9 182 85.7
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 8.5e-86 320.5 182 86.3
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 8.5e-86 320.5 182 85.7
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 8.5e-86 320.5 182 85.2
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 8.5e-86 320.5 182 85.7
Haze_04120 Corylus avellana HOM05D005943 ORTHO05D007328 1.9e-85 319.3 178 88.2
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 1.9e-85 319.3 182 85.7
Solyc01g099890.3 Solanum lycopersicum HOM05D005943 ORTHO05D007328 1.9e-85 319.3 182 86.3
Sopen01g043410 Solanum pennellii HOM05D005943 ORTHO05D007328 1.9e-85 319.3 182 86.3
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 1.9e-85 319.3 182 85.2
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 2.5e-85 318.9 182 85.2
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 2.5e-85 318.9 182 86.3
Aqoxy5G00777 Aquilegia oxysepala HOM05D005943 ORTHO05D007328 3.2e-85 318.5 182 86.3
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 3.2e-85 318.5 182 84.6
unitig_0.g32 Utricularia gibba HOM05D005943 ORTHO05D007328 3.2e-85 318.5 176 87.5
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 4.2e-85 318.2 182 85.2
CsaV3_1G038680 Cucumis sativus L. HOM05D005943 ORTHO05D007328 5.5e-85 317.8 182 84.6
ECA236G0332 Erigeron canadensis HOM05D005943 ORTHO05D007328 5.5e-85 317.8 182 85.7
Migut.E01764 Erythranthe guttata HOM05D005943 ORTHO05D007328 5.5e-85 317.8 182 84.6
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 5.5e-85 317.8 182 85.2
MSTRG.4510 Avicennia marina HOM05D005943 ORTHO05D007328 7.2e-85 317.4 182 84.6
Gohir.A11G269200 Gossypium hirsutum HOM05D005943 ORTHO05D007328 7.2e-85 317.4 182 84.6
Gohir.D11G279400 Gossypium hirsutum HOM05D005943 ORTHO05D007328 7.2e-85 317.4 182 84.6
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 9.4e-85 317.0 182 84.1
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 1.2e-84 316.6 182 85.2
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 1.2e-84 316.6 182 84.1
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 1.6e-84 316.2 182 84.1
Sabra05G0029200 Salix brachista HOM05D001727 ORTHO05D050481 1.6e-84 316.2 177 86.4
Sabra13G0012200 Salix brachista HOM05D001727 ORTHO05D007328 1.6e-84 316.2 180 85.6
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 1.6e-84 316.2 181 84.5
AUR62005222 Chenopodium quinoa HOM05D005943 ORTHO05D007328 2.1e-84 315.8 182 84.1
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 2.1e-84 315.8 182 84.6
Nn3g21529 Nelumbo nucifera HOM05D005943 ORTHO05D007328 2.7e-84 315.5 182 84.6
PGR031G0471 Punica granatum HOM05D005943 ORTHO05D007328 3.6e-84 315.1 176 85.8
COL.COLO4_10548 Corchorus olitorius HOM05D005943 ORTHO05D007328 4.7e-84 314.7 179 85.5
ATR0796G119 Amborella trichopoda HOM05D005943 ORTHO05D007328 6.1e-84 314.3 176 86.9
Os01g0314300 Oryza sativa ssp. japonica HOM05D005943 ORTHO05D007328 6.1e-84 314.3 182 84.6
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 8.0e-84 313.9 182 83.5
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 8.0e-84 313.9 182 83.5
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 1.0e-83 313.5 182 83.5
HPP92_018258 Vanilla planifolia HOM05D005943 ORTHO05D007328 1.0e-83 313.5 182 84.1
Sc06g0003910 Simmondsia chinensis HOM05D005943 ORTHO05D007328 1.4e-83 313.2 182 83.0
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 3.0e-83 312.0 179 84.9
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 3.0e-83 312.0 176 85.2
Lsat_1_v5_gn_7_72860 Lactuca sativa HOM05D005943 ORTHO05D007328 4.0e-83 311.6 179 84.9
PGSC0003DMG400024722 Solanum tuberosum HOM05D005943 ORTHO05D007328 4.0e-83 311.6 182 84.1
Atru.chr2.102 Acer truncatum HOM05D001727 ORTHO05D001758 5.2e-83 311.2 176 85.2
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 5.2e-83 311.2 176 85.2
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 6.7e-83 310.8 176 86.4
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 2.0e-82 309.3 182 81.9
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 2.6e-82 308.9 202 76.7
CDE02G2801 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 3.3e-82 308.5 182 81.3
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 4.4e-82 308.1 178 83.7
MELO3C015293.2 Cucumis melo HOM05D001727 ORTHO05D001758 5.7e-82 307.8 177 83.1
SGA_v2.0_scaffold42G16032 Striga asiatica HOM05D005943 ORTHO05D007328 9.7e-82 307.0 193 79.8
TWI12G0949 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 1.3e-81 306.6 172 87.2
Oeu048875.1 Olea europaea HOM05D005943 ORTHO05D007328 1.7e-81 306.2 182 82.4
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 2.8e-81 305.4 194 79.9
BcaC05g24766 Brassica carinata HOM05D005943 ORTHO05D007328 3.7e-81 305.1 182 83.5
Thhalv10008886m.g Eutrema salsugineum HOM05D005943 ORTHO05D007328 8.2e-81 303.9 182 83.0
BraA06t23801Z Brassica rapa HOM05D005943 ORTHO05D007328 1.1e-80 303.5 178 84.3
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 1.4e-80 303.1 182 82.4
CARHR009020 Cardamine hirsuta HOM05D005943 ORTHO05D007328 3.1e-80 302.0 182 81.9
Peaxi162Scf00037g01419 Petunia axillaris HOM05D005943 ORTHO05D007328 1.6e-79 299.7 178 84.3
AT1G09150 Arabidopsis thaliana HOM05D005943 ORTHO05D007328 2.0e-79 299.3 182 81.3
AL1G19590 Arabidopsis lyrata HOM05D005943 ORTHO05D007328 2.7e-79 298.9 182 81.3
THA.LOC104820740 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 3.5e-79 298.5 178 82.6
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 1.0e-78 297.0 182 80.8
A06p05940 Brassica napus HOM05D005943 ORTHO05D007328 1.3e-78 296.6 175 83.4
C05p07140 Brassica napus HOM05D005943 ORTHO05D007328 1.3e-78 296.6 175 83.4
C08p12460 Brassica napus HOM05D005943 ORTHO05D007328 1.9e-77 292.7 175 81.1
BolC8t48886H Brassica oleracea HOM05D005943 ORTHO05D007328 2.5e-77 292.4 174 81.6
C08p12470 Brassica napus HOM05D005943 ORTHO05D007328 4.2e-77 291.6 175 80.6
A08p34800 Brassica napus HOM05D005943 ORTHO05D007328 9.4e-77 290.4 175 80.0
EL10Ac4g09897 Beta vulgaris HOM05D005943 ORTHO05D007328 2.1e-76 289.3 182 79.1
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 3.0e-75 285.4 208 70.7
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 1.2e-74 283.5 182 77.5
Nitab4.5_0003113g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 8.3e-73 277.3 182 78.0
Nitab4.5_0003497g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 7.0e-72 274.2 157 86.6
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 1.2e-71 273.5 182 75.3
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 4.5e-71 271.6 181 76.8
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 5.9e-71 271.2 155 85.2
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 1.3e-70 270.0 153 84.3
BcaC07g38477 Brassica carinata HOM05D005943 ORTHO05D007328 2.5e-69 265.8 183 74.9
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 9.4e-69 263.8 151 85.4
AUR62000742 Chenopodium quinoa HOM05D005943 ORTHO05D007328 8.0e-68 260.8 155 80.6
CDE09G0522 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 6.8e-67 257.7 148 81.8
Aa31sc55G100 Aethionema arabicum HOM05D005943 ORTHO05D007328 2.4e-64 249.2 155 79.4
BraA08t35391Z Brassica rapa HOM05D005943 ORTHO05D007328 1.0e-62 243.8 140 82.9
FvH4_6g06770 Fragaria vesca HOM05D005943 ORTHO05D007328 1.9e-61 239.6 187 70.1
Atru.chr6.2339 Acer truncatum HOM05D005943 ORTHO05D007328 2.1e-60 236.1 181 69.1
vmacro19698 Vaccinium macrocarpon HOM05D005943 ORTHO05D007328 5.2e-59 231.5 128 85.2
Zm00001eb339860 Zea mays HOM05D005943 ORTHO05D007328 8.9e-59 230.7 130 85.4
arahy.Tifrunner.gnm1.ann1.2NZ4WG Arachis hypogaea HOM05D000716 ORTHO05D004822 4.9e-57 224.9 126 84.1
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 8.3e-57 224.2 184 59.8
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 2.5e-53 212.6 177 56.5
MCO12G098 Micromonas commoda HOM05D005943 ORTHO05D007328 2.1e-52 209.5 185 57.8
SalBow1G5257 Salvia bowleyana HOM05D005943 ORTHO05D007328 5.2e-51 204.9 155 67.7
Eucgr.H03253 Eucalyptus grandis HOM05D005943 ORTHO05D007328 9.5e-45 184.1 105 85.7
MBI18_g25341_MAGBIO Magnolia biondii HOM05D005943 ORTHO05D007328 9.5e-45 184.1 105 85.7
SEGI_36457 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 9.5e-45 184.1 101 86.1
Phvul.009G047833 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 1.2e-44 183.7 105 85.7
TAR362G1289 Trochodendron aralioides HOM05D005943 ORTHO05D007328 4.7e-44 181.8 105 84.8
Duzib106G1343 Durio zibethinus HOM05D005943 ORTHO05D007328 9.8e-42 174.1 179 55.9
TAR633G1587 Trochodendron aralioides HOM05D005943 ORTHO05D007328 1.9e-37 159.8 154 58.4
HPP92_018260 Vanilla planifolia HOM05D005943 ORTHO05D007328 3.3e-37 159.1 100 78.0
BcaC07g38474 Brassica carinata HOM05D005943 ORTHO05D007328 2.8e-36 156.0 92 84.8
Eucgr.H03239 Eucalyptus grandis HOM05D005943 ORTHO05D007328 6.2e-36 154.8 92 84.8
Eucgr.H03249 Eucalyptus grandis HOM05D005943 ORTHO05D007328 8.1e-36 154.5 86 86.0
CBR_g36436 Chara braunii HOM05D005943 ORTHO05D007328 1.8e-35 153.3 89 78.7
CBR_g20980 Chara braunii HOM05D005943 ORTHO05D007328 4.9e-33 145.2 87 81.6
Cre50.g761397 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 7.1e-32 141.4 127 56.7
Eucgr.H03245 Eucalyptus grandis HOM05D005943 ORTHO05D007328 4.0e-27 125.6 92 71.7
ClCG03G017220 Citrullus lanatus HOM05D001727 ORTHO05D001758 1.2e-26 124.0 70 82.9
EL10Ac5g11162 Beta vulgaris HOM05D005943 ORTHO05D007328 7.1e-24 114.8 77 75.3
Eucgr.H03250 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.2e-23 114.0 70 80.0
Nn1g03974 Nelumbo nucifera HOM05D005943 ORTHO05D007328 2.4e-16 89.7 48 83.3
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 3.5e-15 85.9 184 32.1
SEGI_40081 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 1.8e-14 83.6 49 83.7
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 1.3e-12 77.4 184 29.9
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 2.1e-12 76.6 184 30.4
Cre03.g168605 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 3.1e-11 72.8 53 62.3
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 5.3e-11 72.0 183 30.1
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 3.4e-10 69.3 183 27.9
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 7.6e-10 68.2 184 27.7
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 1.4e-08 63.9 184 26.6


User provided reference genes

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