Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0028s0026 Marchantia polymorpha HOM05D005884 ORTHO05D007282 4.1e-94 348.2 197 100.0
Lsat_1_v5_gn_5_179880 Lactuca sativa HOM05D005884 ORTHO05D007282 8.8e-20 101.3 134 52.2
ECA248G2691 Erigeron canadensis HOM05D005884 ORTHO05D007282 1.1e-17 94.4 134 48.5
HanXRQChr01g0014641 Helianthus annuus HOM05D005884 ORTHO05D007282 1.4e-17 94.0 149 47.7
Actinidia23729 Actinidia chinensis HOM05D005884 ORTHO05D007282 3.1e-17 92.8 135 47.4
CSS0032503 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 9.1e-17 91.3 97 53.6
Sc05g0002430 Simmondsia chinensis HOM05D005884 ORTHO05D007282 1.2e-16 90.9 142 44.4
CSS0024949 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 2.6e-16 89.7 97 52.6
Peaxi162Scf00107g01314 Petunia axillaris HOM05D005884 ORTHO05D007282 2.6e-16 89.7 92 54.3
SEGI_25444 Sequoiadendron giganteum HOM05D005884 ORTHO05D007282 2.6e-16 89.7 127 45.7
BcaB03g16138 Brassica carinata HOM05D005884 ORTHO05D007282 3.5e-16 89.4 129 44.2
ATR0736G055 Amborella trichopoda HOM05D005884 ORTHO05D007282 4.5e-16 89.0 127 46.5
CAN.G122.4 Capsicum annuum HOM05D005884 ORTHO05D007282 4.5e-16 89.0 61 70.5
Cc03_g12390 Coffea canephora HOM05D005884 ORTHO05D007282 5.9e-16 88.6 143 44.1
Lj2A1133T33 Lonicera japonica HOM05D005884 ORTHO05D007282 5.9e-16 88.6 124 49.2
Dinv04661 Davidia involucrata HOM05D005884 ORTHO05D007282 7.7e-16 88.2 137 44.5
Lj3g0000124 Lotus japonicus HOM05D005884 ORTHO05D007282 7.7e-16 88.2 141 45.4
CiPaw.04G106200 Carya illinoinensis HOM05D005884 ORTHO05D007282 1.0e-15 87.8 128 46.1
PGR044G0377 Punica granatum HOM05D005884 ORTHO05D007282 1.0e-15 87.8 168 39.9
TWI18G1166 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 1.0e-15 87.8 122 50.8
Eucgr.H00802 Eucalyptus grandis HOM05D005884 ORTHO05D007282 1.3e-15 87.4 102 52.9
AagrBONN_evm.TU.Sc2ySwM_228.3174 Anthoceros agrestis HOM05D005884 ORTHO05D007282 1.7e-15 87.0 127 48.8
Hma1.2p1_0351F.1_g132860 Hydrangea macrophylla HOM05D005884 ORTHO05D007282 2.2e-15 86.7 121 47.1
Nitab4.5_0000866g0050 Nicotiana tabacum HOM05D005884 ORTHO05D007282 2.2e-15 86.7 112 50.0
QL02p021928 Quercus lobata HOM05D005884 ORTHO05D007282 2.2e-15 86.7 101 52.5
Hund18350 Selenicereus undatus HOM05D005884 ORTHO05D007282 2.2e-15 86.7 113 48.7
vmacro14762 Vaccinium macrocarpon HOM05D005884 ORTHO05D007282 2.2e-15 86.7 136 46.3
Cfa002560 Carpinus fangiana HOM05D005884 ORTHO05D007282 2.9e-15 86.3 76 60.5
Haze_24787 Corylus avellana HOM05D005884 ORTHO05D007282 2.9e-15 86.3 76 60.5
Nitab4.5_0003790g0020 Nicotiana tabacum HOM05D005884 ORTHO05D007282 2.9e-15 86.3 112 48.2
SGA_v2.0_scaffold8G04650 Striga asiatica HOM05D005884 ORTHO05D007282 2.9e-15 86.3 71 57.7
arahy.Tifrunner.gnm1.ann1.C60K2U Arachis hypogaea HOM05D005884 ORTHO05D007282 3.8e-15 85.9 99 56.6
Rhsim01G0257200 Rhododendron simsii HOM05D005884 ORTHO05D007282 3.8e-15 85.9 132 46.2
DCAR_018555 Daucus carota HOM05D005884 ORTHO05D007282 6.5e-15 85.1 122 45.9
Dinv19212 Davidia involucrata HOM05D005884 ORTHO05D007282 6.5e-15 85.1 132 45.5
Duzib133G0404 Durio zibethinus HOM05D005884 ORTHO05D007282 6.5e-15 85.1 169 41.4
HPP92_022492 Vanilla planifolia HOM05D005884 ORTHO05D007282 6.5e-15 85.1 168 38.1
Aqoxy2G03761 Aquilegia oxysepala HOM05D005884 ORTHO05D007282 8.5e-15 84.7 126 45.2
CiPaw.03G150900 Carya illinoinensis HOM05D005884 ORTHO05D007282 8.5e-15 84.7 134 44.8
Nn1g07794 Nelumbo nucifera HOM05D005884 ORTHO05D007282 8.5e-15 84.7 135 44.4
Ciclev10022209m.g Citrus clementina HOM05D005884 ORTHO05D007282 1.1e-14 84.3 113 47.8
COL.COLO4_10043 Corchorus olitorius HOM05D003123 ORTHO05D007282 1.1e-14 84.3 119 50.4
FAN15G1595 Fragaria x ananassa HOM05D005884 ORTHO05D007282 1.5e-14 84.0 166 41.6
PSO017G2163 Papaver somniferum HOM05D005884 ORTHO05D007282 1.5e-14 84.0 98 57.1
CDE02G3372 Ceratophyllum demersum HOM05D005884 ORTHO05D007282 1.9e-14 83.6 123 46.3
FvH4_2g19250 Fragaria vesca HOM05D005884 ORTHO05D007282 1.9e-14 83.6 112 50.0
Oeu015899.1 Olea europaea HOM05D005884 ORTHO05D007282 1.9e-14 83.6 116 46.6
MSTRG.18383 Avicennia marina HOM05D005884 ORTHO05D007282 2.5e-14 83.2 124 44.4
FAN24G3425 Fragaria x ananassa HOM05D005884 ORTHO05D007282 2.5e-14 83.2 113 49.6
Manes.13G044700 Manihot esculenta HOM05D005884 ORTHO05D007282 2.5e-14 83.2 135 43.0
Medtr4g017880 Medicago truncatula HOM05D005884 ORTHO05D007282 2.5e-14 83.2 100 51.0
PGSC0003DMG400028009 Solanum tuberosum HOM05D005884 ORTHO05D007282 2.5e-14 83.2 101 47.5
Thecc.01G227600 Theobroma cacao HOM05D005884 ORTHO05D007282 2.5e-14 83.2 170 41.8
TWI36G0226 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 2.5e-14 83.2 125 48.0
arahy.Tifrunner.gnm1.ann1.Q3DN0U Arachis hypogaea HOM05D005884 ORTHO05D007282 3.2e-14 82.8 140 47.1
Sp7g10660 Schrenkiella parvula HOM05D005884 ORTHO05D007282 3.2e-14 82.8 120 41.7
Sopen09g024260 Solanum pennellii HOM05D005884 ORTHO05D007282 3.2e-14 82.8 102 50.0
TAR362G0919 Trochodendron aralioides HOM05D005884 ORTHO05D007282 4.2e-14 82.4 142 41.5
FAN27G0062 Fragaria x ananassa HOM05D005884 ORTHO05D007282 5.5e-14 82.0 155 42.6
Solyc09g061440.4 Solanum lycopersicum HOM05D005884 ORTHO05D007282 5.5e-14 82.0 102 51.0
FAN15G1921 Fragaria x ananassa HOM05D005884 ORTHO05D007282 7.2e-14 81.6 216 36.6
PSO063G4085 Papaver somniferum HOM05D005884 ORTHO05D007282 7.2e-14 81.6 98 56.1
Potri.002G241000 Populus trichocarpa HOM05D005884 ORTHO05D007282 7.2e-14 81.6 166 43.4
RcHm_v2.0_Chr6g0285061 Rosa chinensis HOM05D005884 ORTHO05D007282 9.4e-14 81.3 164 41.5
SalBow4G1286 Salvia bowleyana HOM05D005884 ORTHO05D007282 9.4e-14 81.3 115 46.1
Migut.D00525 Erythranthe guttata HOM05D005884 ORTHO05D007282 1.2e-13 80.9 132 42.4
Glyma.18G149300 Glycine max HOM05D005884 ORTHO05D007282 1.2e-13 80.9 99 50.5
Psat7g243200 Pisum sativum HOM05D005884 ORTHO05D007282 1.2e-13 80.9 128 46.1
EL10Ac7g17785 Beta vulgaris HOM05D005884 ORTHO05D007282 1.6e-13 80.5 84 54.8
Lalb_Chr07g0194041 Lupinus albus HOM05D005884 ORTHO05D007282 1.6e-13 80.5 137 44.5
Ca_20129_v3 Cicer arietinum L. HOM05D005884 ORTHO05D007282 2.1e-13 80.1 109 46.8
GSVIVG01028583001 Vitis vinifera HOM05D005884 ORTHO05D007282 2.1e-13 80.1 110 46.4
Duzib138G0327 Durio zibethinus HOM05D005884 ORTHO05D007282 3.6e-13 79.3 179 41.3
AUR62031836 Chenopodium quinoa HOM05D005884 ORTHO05D007282 4.7e-13 79.0 96 50.0
Os04g0513000 Oryza sativa ssp. japonica HOM05D005884 ORTHO05D007282 4.7e-13 79.0 64 62.5
Sabra02G0183600 Salix brachista HOM05D005884 ORTHO05D007282 6.1e-13 78.6 168 38.1
Gohir.A07G156200 Gossypium hirsutum HOM05D005884 ORTHO05D007282 8.0e-13 78.2 146 42.5
Ah.08g213990 Amaranthus hybridus HOM05D005884 ORTHO05D007282 1.0e-12 77.8 156 40.4
Carub.0007s2947 Capsella rubella HOM05D005884 ORTHO05D007282 1.0e-12 77.8 138 42.0
Cpa.g.sc8.170 Carica papaya HOM05D005884 ORTHO05D007282 1.0e-12 77.8 153 41.8
MELO3C012764.2 Cucumis melo HOM05D005884 ORTHO05D007282 1.0e-12 77.8 100 50.0
Gohir.D07G162500 Gossypium hirsutum HOM05D005884 ORTHO05D007282 1.4e-12 77.4 182 36.8
Manes.12G041200 Manihot esculenta HOM05D005884 ORTHO05D007282 1.4e-12 77.4 122 43.4
Zm00001eb426500 Zea mays HOM05D005884 ORTHO05D007282 1.4e-12 77.4 112 44.6
Migut.N02263 Erythranthe guttata HOM05D005884 ORTHO05D007282 1.8e-12 77.0 100 49.0
Gorai.001G186100 Gossypium raimondii HOM05D005884 ORTHO05D007282 1.8e-12 77.0 182 36.8
Glyma.03G080200 Glycine max HOM05D005884 ORTHO05D007282 3.0e-12 76.3 175 40.0
CsaV3_7G025830 Cucumis sativus L. HOM05D005884 ORTHO05D007282 3.9e-12 75.9 119 45.4
MBI10_g44186_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 5.2e-12 75.5 170 37.1
MD10G1165900 Malus domestica HOM05D005884 ORTHO05D007282 6.7e-12 75.1 100 51.0
unitig_22.g6325 Utricularia gibba HOM05D005884 ORTHO05D007282 6.7e-12 75.1 118 41.5
Thhalv10026263m.g Eutrema salsugineum HOM05D005884 ORTHO05D007282 1.1e-11 74.3 124 42.7
Phvul.010G014200 Phaseolus vulgaris HOM05D005884 ORTHO05D007282 1.1e-11 74.3 129 44.2
MBI07_g23671_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 1.5e-11 73.9 188 37.8
MD05G1177500 Malus domestica HOM05D005884 ORTHO05D007282 2.0e-11 73.6 186 37.6
Prupe.8G204400 Prunus persica HOM05D005884 ORTHO05D007282 2.0e-11 73.6 186 36.6
A04p08870 Brassica napus HOM05D005884 ORTHO05D007282 3.3e-11 72.8 131 38.9
THA.LOC104804605 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 3.3e-11 72.8 80 50.0
Pp3c5_25810 Physcomitrium patens HOM05D005884 ORTHO05D007282 4.4e-11 72.4 177 36.7
VMungo0331G1358 Vigna mungo HOM05D005884 ORTHO05D007282 5.7e-11 72.0 67 55.2
BraA04t16580Z Brassica rapa HOM05D005884 ORTHO05D007282 9.7e-11 71.2 148 37.8
CARHR218670 Cardamine hirsuta HOM05D005884 ORTHO05D007282 9.7e-11 71.2 114 47.4
ClCG09G009110 Citrullus lanatus HOM05D005884 ORTHO05D007282 9.7e-11 71.2 122 45.1
AT4G13200 Arabidopsis thaliana HOM05D005884 ORTHO05D007282 1.7e-10 70.5 66 57.6
BcaC02g09439 Brassica carinata HOM05D005884 ORTHO05D007282 2.2e-10 70.1 150 38.7
BolC4t25837H Brassica oleracea HOM05D005884 ORTHO05D007282 2.2e-10 70.1 148 37.8
AUR62008873 Chenopodium quinoa HOM05D005884 ORTHO05D007282 2.2e-10 70.1 141 40.4
C04p42740 Brassica napus HOM05D005884 ORTHO05D007282 2.8e-10 69.7 148 39.9
Sed0001531 Sechium edule HOM05D005884 ORTHO05D007282 2.8e-10 69.7 109 45.0
THA.LOC104808781 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 6.3e-10 68.6 62 59.7
TAR633G1722 Trochodendron aralioides HOM05D005884 ORTHO05D007282 6.3e-10 68.6 131 42.0
TPR.G8219 Trifolium pratense HOM05D005884 ORTHO05D007282 8.2e-10 68.2 120 43.3
AL9U10790 Arabidopsis lyrata HOM05D005884 ORTHO05D007282 1.8e-09 67.0 79 49.4
TAR194G0001 Trochodendron aralioides HOM05D005884 ORTHO05D004773 2.4e-09 66.6 119 44.5
MCO02G464 Micromonas commoda HOM05D005884 ORTHO05D007282 4.1e-09 65.9 69 50.7
MSTRG.17548 Avicennia marina HOM05D005884 ORTHO05D007282 5.3e-09 65.5 112 40.2
MBI06_g14323_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 5.3e-09 65.5 67 50.7
Gorai.009G365800 Gossypium raimondii HOM05D005884 ORTHO05D007282 9.1e-09 64.7 119 37.8
Aa31LG9G4610 Aethionema arabicum HOM05D005884 ORTHO05D007282 1.2e-08 64.3 57 56.1
PRCOL_00003747 Prasinoderma coloniale HOM05D005884 ORTHO05D007282 1.2e-08 64.3 51 56.9
SalBow2G0198 Salvia bowleyana HOM05D005884 ORTHO05D007282 2.6e-08 63.2 71 45.1
Atru.chr3.3178 Acer truncatum HOM05D005884 ORTHO05D007282 5.9e-08 62.0 39 74.4
Gohir.A09G200610 Gossypium hirsutum HOM05D005884 ORTHO05D007282 1.7e-07 60.5 83 45.8
CANSAT01G0442 Cannabis sativa HOM05D005884 ORTHO05D007282 5.0e-07 58.9 131 40.5
Cre01.g032750 Chlamydomonas reinhardtii HOM05D005884 ORTHO05D007282 4.2e-06 55.8 86 39.5


User provided reference genes

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