Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0028s0021 Marchantia polymorpha HOM05D002504 ORTHO05D007555 1.8e-257 892.1 456 100.0
AagrBONN_evm.TU.Sc2ySwM_369.370 Anthoceros agrestis HOM05D002504 ORTHO05D007555 1.4e-47 194.9 377 33.7
Pp3c1_3820 Physcomitrium patens HOM05D002504 ORTHO05D007555 1.1e-46 191.8 401 32.7
Pp3c1_3850 Physcomitrium patens HOM05D002504 ORTHO05D007555 1.1e-46 191.8 401 32.7
Rhsim12G0158700 Rhododendron simsii HOM05D002504 ORTHO05D007555 6.3e-29 132.9 374 28.9
Actinidia34980 Actinidia chinensis HOM05D002504 ORTHO05D007555 3.1e-28 130.6 357 25.5
SMO367G0630 Selaginella moellendorffii HOM05D002504 ORTHO05D007555 1.3e-26 125.2 348 27.6
Actinidia19055 Actinidia chinensis HOM05D002504 ORTHO05D007555 3.8e-26 123.6 343 25.9
Duzib068G0930 Durio zibethinus HOM05D002504 ORTHO05D007555 6.5e-26 122.9 346 28.3
FAN04G1481 Fragaria x ananassa HOM05D002504 ORTHO05D007555 6.5e-26 122.9 351 27.4
FAN13G2799 Fragaria x ananassa HOM05D002504 ORTHO05D007555 6.5e-26 122.9 351 27.4
TWI39G0444 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 8.5e-26 122.5 415 24.8
THA.LOC104808328 Tarenaya hassleriana HOM05D002504 ORTHO05D007555 1.1e-25 122.1 412 26.2
Manes.14G075600 Manihot esculenta HOM05D002504 ORTHO05D007555 1.5e-25 121.7 414 25.4
CiPaw.11G039400 Carya illinoinensis HOM05D002504 ORTHO05D007555 2.5e-25 120.9 317 28.1
SEGI_18201 Sequoiadendron giganteum HOM05D002504 ORTHO05D007555 2.5e-25 120.9 339 28.0
FvH4_5g15370 Fragaria vesca HOM05D002504 ORTHO05D007555 3.2e-25 120.6 351 27.1
TWI38G0829 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 3.2e-25 120.6 415 24.6
CSS0049848 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 4.2e-25 120.2 400 24.8
FAN08G0998 Fragaria x ananassa HOM05D002504 ORTHO05D007555 5.5e-25 119.8 351 26.5
FAN18G2091 Fragaria x ananassa HOM05D002504 ORTHO05D007555 5.5e-25 119.8 351 26.8
AT1G18850 Arabidopsis thaliana HOM05D002504 ORTHO05D007555 7.2e-25 119.4 330 26.7
Ciclev10020527m.g Citrus clementina HOM05D002504 ORTHO05D007555 7.2e-25 119.4 326 27.3
Gohir.D11G032900 Gossypium hirsutum HOM05D002504 ORTHO05D007555 2.1e-24 117.9 348 25.9
MELO3C007518.2 Cucumis melo HOM05D002504 ORTHO05D007555 2.7e-24 117.5 412 27.4
COL.COLO4_05456 Corchorus olitorius HOM05D002504 ORTHO05D007555 6.1e-24 116.3 354 26.3
CARHR019500 Cardamine hirsuta HOM05D002504 ORTHO05D007555 8.0e-24 115.9 332 27.7
Gorai.007G035700 Gossypium raimondii HOM05D002504 ORTHO05D007555 1.0e-23 115.5 346 25.4
A06p15070 Brassica napus HOM05D002504 ORTHO05D007555 1.8e-23 114.8 417 27.1
Cpa.g.sc17.218 Carica papaya HOM05D002504 ORTHO05D007555 1.8e-23 114.8 401 23.7
Gohir.A11G029531 Gossypium hirsutum HOM05D002504 ORTHO05D007555 1.8e-23 114.8 348 24.7
Dinv09821 Davidia involucrata HOM05D002504 ORTHO05D007555 2.3e-23 114.4 400 23.8
Potri.015G064300 Populus trichocarpa HOM05D002504 ORTHO05D007555 3.0e-23 114.0 351 24.8
RcHm_v2.0_Chr7g0180701 Rosa chinensis HOM05D002504 ORTHO05D007555 3.0e-23 114.0 351 26.2
AL1G31390 Arabidopsis lyrata HOM05D002504 ORTHO05D007555 4.0e-23 113.6 330 26.1
CsaV3_6G042770 Cucumis sativus L. HOM05D002504 ORTHO05D007555 4.0e-23 113.6 419 27.4
Sc10g0009970 Simmondsia chinensis HOM05D002504 ORTHO05D007555 4.0e-23 113.6 332 27.4
arahy.Tifrunner.gnm1.ann1.XHUI7I Arachis hypogaea HOM05D002504 ORTHO05D007555 5.2e-23 113.2 416 25.5
C05p17270 Brassica napus HOM05D002504 ORTHO05D007555 5.2e-23 113.2 259 31.3
BolC5t30427H Brassica oleracea HOM05D002504 ORTHO05D007555 5.2e-23 113.2 259 31.3
PSO591G0510 Papaver somniferum HOM05D002504 ORTHO05D007555 5.2e-23 113.2 411 25.1
BraA06t24622Z Brassica rapa HOM05D002504 ORTHO05D007555 6.7e-23 112.8 417 26.6
CSS0041593 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 6.7e-23 112.8 375 24.8
Thecc.03G080700 Theobroma cacao HOM05D002504 ORTHO05D007555 6.7e-23 112.8 330 26.4
TAR374G0022 Trochodendron aralioides HOM05D002504 ORTHO05D007555 6.7e-23 112.8 366 25.4
Dinv19925 Davidia involucrata HOM05D002504 ORTHO05D007332 8.8e-23 112.5 400 23.0
Lj5P114T15 Lonicera japonica HOM05D002504 ORTHO05D007555 8.8e-23 112.5 244 27.0
TAR622G0915 Trochodendron aralioides HOM05D002504 ORTHO05D007555 8.8e-23 112.5 372 25.3
arahy.Tifrunner.gnm1.ann1.AAW7H5 Arachis hypogaea HOM05D002504 ORTHO05D007555 1.5e-22 111.7 416 26.0
BcaB07g31903 Brassica carinata HOM05D002504 ORTHO05D007555 1.5e-22 111.7 240 32.1
MD14G1195800 Malus domestica HOM05D002504 ORTHO05D007555 1.5e-22 111.7 332 27.1
Sed0014360 Sechium edule HOM05D002504 ORTHO05D007555 1.5e-22 111.7 418 25.1
HPP92_004873 Vanilla planifolia HOM05D002504 ORTHO05D007555 1.5e-22 111.7 357 27.5
arahy.Tifrunner.gnm1.ann1.A4B6B0 Arachis hypogaea HOM05D002504 ORTHO05D007555 2.6e-22 110.9 430 24.9
QL10p015753 Quercus lobata HOM05D002504 ORTHO05D007555 2.6e-22 110.9 351 25.4
BcaC05g25787 Brassica carinata HOM05D002504 ORTHO05D007555 3.3e-22 110.5 259 30.9
arahy.Tifrunner.gnm1.ann1.WQI89G Arachis hypogaea HOM05D002504 ORTHO05D007555 4.4e-22 110.2 416 25.7
Carub.0001s1850 Capsella rubella HOM05D002504 ORTHO05D007555 4.4e-22 110.2 323 27.9
Cc04_g15430 Coffea canephora HOM05D002504 ORTHO05D007555 7.5e-22 109.4 408 23.0
Nn5g27262 Nelumbo nucifera HOM05D002504 ORTHO05D007555 1.3e-21 108.6 256 28.9
Psat5g114360 Pisum sativum HOM05D002504 ORTHO05D007555 1.3e-21 108.6 333 25.2
ClCG01G016490 Citrullus lanatus HOM05D002504 ORTHO05D007555 1.7e-21 108.2 351 25.9
Oeu022629.1 Olea europaea HOM05D002504 ORTHO05D007555 1.7e-21 108.2 351 24.8
PSO832G2768 Papaver somniferum HOM05D002504 ORTHO05D007555 1.7e-21 108.2 410 23.4
Glyma.17G097600 Glycine max HOM05D002504 ORTHO05D007555 2.2e-21 107.8 351 25.4
Nn3g16999 Nelumbo nucifera HOM05D002504 ORTHO05D007555 2.2e-21 107.8 315 29.2
Cfa018981 Carpinus fangiana HOM05D002504 ORTHO05D007555 2.8e-21 107.5 351 24.8
Haze_07368 Corylus avellana HOM05D002504 ORTHO05D007555 2.8e-21 107.5 351 25.4
Eucgr.A00822 Eucalyptus grandis HOM05D002504 ORTHO05D007555 3.7e-21 107.1 367 26.4
VMungo1215G2696 Vigna mungo HOM05D002504 ORTHO05D007555 3.7e-21 107.1 338 25.1
Aa31LG7G3620 Aethionema arabicum HOM05D002504 ORTHO05D007555 4.8e-21 106.7 330 26.7
CDE07G0237 Ceratophyllum demersum HOM05D002504 ORTHO05D007555 4.8e-21 106.7 350 25.7
SHI03355 Sapria himalayana HOM05D002504 ORTHO05D007555 6.3e-21 106.3 316 24.4
QL10p005074 Quercus lobata HOM05D002504 ORTHO05D007555 8.3e-21 105.9 398 23.4
HanXRQChr06g0178031 Helianthus annuus HOM05D002504 ORTHO05D007555 1.1e-20 105.5 384 23.2
TPR.G5442 Trifolium pratense HOM05D002504 ORTHO05D007555 1.1e-20 105.5 356 24.4
Medtr3g078030 Medicago truncatula HOM05D002504 ORTHO05D007555 1.8e-20 104.8 351 24.2
CANSAT78G1429 Cannabis sativa HOM05D002504 ORTHO05D007555 2.4e-20 104.4 311 27.0
PGSC0003DMG400033071 Solanum tuberosum HOM05D002504 ORTHO05D007555 4.1e-20 103.6 272 25.7
Atru.BG.192.p Acer truncatum HOM05D002504 ORTHO05D007555 7.0e-20 102.8 333 25.5
Phvul.003G192200 Phaseolus vulgaris HOM05D002504 ORTHO05D007555 9.1e-20 102.4 338 23.4
Sabra15G0090100 Salix brachista HOM05D002504 ORTHO05D007555 9.1e-20 102.4 351 24.5
Sp1g16830 Schrenkiella parvula HOM05D002504 ORTHO05D007555 9.1e-20 102.4 240 30.0
SalBow5G4081 Salvia bowleyana HOM05D002504 ORTHO05D007555 1.2e-19 102.1 356 23.6
Solyc06g071010.4 Solanum lycopersicum HOM05D002504 ORTHO05D007555 1.6e-19 101.7 297 24.2
MSTRG.4344 Avicennia marina HOM05D002504 ORTHO05D007555 2.0e-19 101.3 397 22.9
Lalb_Chr12g0196751 Lupinus albus HOM05D002504 ORTHO05D007555 2.0e-19 101.3 336 23.8
Prupe.5G187600 Prunus persica HOM05D002504 ORTHO05D007555 2.0e-19 101.3 333 25.5
Aqoxy3G03288 Aquilegia oxysepala HOM05D002504 ORTHO05D007555 2.7e-19 100.9 403 23.6
Ca_16191_v3 Cicer arietinum L. HOM05D002504 ORTHO05D007555 2.7e-19 100.9 343 23.0
Lj4g0008726 Lotus japonicus HOM05D002504 ORTHO05D007555 2.7e-19 100.9 342 24.9
Sopen06g027310 Solanum pennellii HOM05D002504 ORTHO05D007555 2.7e-19 100.9 297 23.9
MBI03_g18947_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 7.7e-19 99.4 330 27.0
PGR083G1477 Punica granatum HOM05D002504 ORTHO05D007555 7.7e-19 99.4 333 25.5
DCAR_001955 Daucus carota HOM05D002504 ORTHO05D007555 2.2e-18 97.8 369 24.7
Thhalv10007868m.g Eutrema salsugineum HOM05D002504 ORTHO05D007555 2.2e-18 97.8 330 26.1
TPR.G1695 Trifolium pratense HOM05D002504 ORTHO05D007555 5.0e-18 96.7 351 23.1
CBR_g26261 Chara braunii HOM05D002504 ORTHO05D007555 8.5e-18 95.9 303 25.4
CAN.G628.37 Capsicum annuum HOM05D002504 ORTHO05D007555 1.5e-17 95.1 330 23.0
Peaxi162Scf00013g00007 Petunia axillaris HOM05D002504 ORTHO05D007555 1.9e-17 94.7 285 27.4
AUR62038455 Chenopodium quinoa HOM05D002504 ORTHO05D007555 2.5e-17 94.4 352 23.6
AUR62042153 Chenopodium quinoa HOM05D002504 ORTHO05D007555 2.5e-17 94.4 352 23.3
EL10As5g23568 Beta vulgaris HOM05D002504 ORTHO05D007555 3.2e-17 94.0 394 24.4
DCAR_001117 Daucus carota HOM05D002504 ORTHO05D007555 4.2e-17 93.6 397 24.2
Nitab4.5_0007394g0010 Nicotiana tabacum HOM05D002504 ORTHO05D007555 4.2e-17 93.6 323 22.9
Glyma.05G029300 Glycine max HOM05D002504 ORTHO05D007555 9.4e-17 92.4 268 25.7
Nitab4.5_0000269g0140 Nicotiana tabacum HOM05D002504 ORTHO05D007555 9.4e-17 92.4 323 22.6
AagrBONN_evm.TU.Sc2ySwM_362.2581 Anthoceros agrestis HOM05D002504 ORTHO05D007555 1.2e-16 92.0 315 24.8
PSO063G6525 Papaver somniferum HOM05D002504 ORTHO05D007555 2.1e-16 91.3 265 24.9
Migut.I00134 Erythranthe guttata HOM05D002504 ORTHO05D007555 2.7e-16 90.9 388 23.7
Lsat_1_v5_gn_1_10961 Lactuca sativa HOM05D002504 ORTHO05D007555 2.7e-16 90.9 246 24.8
ATR1120G016 Amborella trichopoda HOM05D002504 ORTHO05D007555 3.0e-15 87.4 306 23.9
Lj7P436T44 Lonicera japonica HOM05D002504 ORTHO05D007555 3.0e-15 87.4 267 27.3
unitig_52.g17495 Utricularia gibba HOM05D002504 ORTHO05D007555 4.0e-15 87.0 240 25.4
MBI03_g28522_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 1.2e-14 85.5 232 28.0
MBI11_g21312_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 1.2e-14 85.5 373 25.2
ECA236G0190 Erigeron canadensis HOM05D002504 ORTHO05D007332 2.0e-14 84.7 256 25.4
GSVIVG01008049001 Vitis vinifera HOM05D002504 ORTHO05D007555 2.0e-14 84.7 268 25.0
Zm00001eb334590 Zea mays HOM05D002504 ORTHO05D007555 1.5e-09 68.6 273 22.3
Dinv02434 Davidia involucrata HOM05D002504 ORTHO05D007555 3.3e-09 67.4 175 25.7
Zm00001eb126250 Zea mays HOM05D002504 ORTHO05D007555 5.5e-09 66.6 244 23.4
Os01g0112100 Oryza sativa ssp. japonica HOM05D002504 ORTHO05D007555 1.2e-08 65.5 288 21.9
SGA_v2.0_scaffold56G20046 Striga asiatica HOM05D002504 ORTHO05D007555 1.2e-08 65.5 369 22.8
Cre03.g163700 Chlamydomonas reinhardtii HOM05D002504 ORTHO05D144518 7.5e-06 56.2 171 27.5


User provided reference genes

Program Settings