Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 1.2e-305 1052.4 527 100.0
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 4.7e-145 518.8 481 57.2
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 1.2e-143 514.2 497 55.1
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 2.2e-142 510.0 468 56.6
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 6.2e-129 465.3 495 49.5
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 1.7e-126 457.2 494 48.8
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.7e-126 457.2 500 48.0
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 1.7e-126 457.2 500 48.0
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 2.9e-126 456.4 500 48.4
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 2.9e-126 456.4 480 49.4
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 8.4e-126 454.9 486 48.8
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 1.1e-125 454.5 509 48.3
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 3.2e-125 453.0 480 49.0
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 4.2e-125 452.6 478 49.0
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 4.2e-125 452.6 513 46.8
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 1.6e-124 450.7 504 48.2
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 1.6e-124 450.7 508 47.4
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 4.6e-124 449.1 506 48.2
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 4.6e-124 449.1 493 48.3
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 6.0e-124 448.7 506 48.0
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 7.8e-124 448.4 506 48.2
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 3.0e-123 446.4 505 47.7
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 3.0e-123 446.4 515 46.6
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 3.9e-123 446.0 528 45.6
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 3.9e-123 446.0 480 48.1
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 5.1e-123 445.7 504 48.0
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 6.6e-123 445.3 513 46.6
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 1.1e-122 444.5 504 48.0
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 1.1e-122 444.5 504 48.0
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 1.5e-122 444.1 480 47.9
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 2.5e-122 443.4 526 46.0
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 5.6e-122 442.2 530 45.7
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 5.6e-122 442.2 503 47.5
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 5.6e-122 442.2 534 46.8
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 7.3e-122 441.8 533 45.8
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 7.3e-122 441.8 480 47.9
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 9.6e-122 441.4 513 46.2
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 1.3e-121 441.0 496 49.0
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 1.6e-121 440.7 533 45.4
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 2.8e-121 439.9 502 46.6
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 6.2e-121 438.7 528 46.6
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 6.2e-121 438.7 506 47.4
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 8.1e-121 438.3 508 47.6
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 8.1e-121 438.3 504 47.0
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 2.4e-120 436.8 481 47.8
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 2.4e-120 436.8 477 48.2
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 3.1e-120 436.4 499 45.9
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 3.1e-120 436.4 499 46.1
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 3.1e-120 436.4 506 47.2
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.1e-120 436.4 508 46.7
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 4.0e-120 436.0 499 46.1
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 4.0e-120 436.0 492 48.6
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 4.0e-120 436.0 493 46.7
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 4.0e-120 436.0 516 45.7
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 4.0e-120 436.0 492 47.4
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 9.0e-120 434.9 500 46.8
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 1.2e-119 434.5 534 44.9
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 1.5e-119 434.1 507 46.2
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 2.6e-119 433.3 497 46.3
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 3.4e-119 433.0 507 45.6
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 7.6e-119 431.8 508 46.1
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 7.6e-119 431.8 508 46.9
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 9.9e-119 431.4 477 48.8
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 1.3e-118 431.0 481 48.6
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 1.3e-118 431.0 477 47.2
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 1.7e-118 430.6 478 46.9
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 2.2e-118 430.3 516 45.7
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 2.2e-118 430.3 530 45.8
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 1.4e-117 427.6 478 46.9
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 1.4e-117 427.6 562 43.6
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 1.9e-117 427.2 499 45.1
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 1.9e-117 427.2 492 46.3
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 2.4e-117 426.8 498 46.2
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 9.3e-117 424.9 492 45.9
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 1.6e-116 424.1 476 47.7
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 3.5e-116 422.9 496 45.8
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 3.5e-116 422.9 499 46.7
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 6.0e-116 422.2 478 47.1
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 1.7e-115 420.6 499 44.9
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 3.0e-115 419.9 478 46.0
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 5.1e-115 419.1 477 47.0
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 1.5e-114 417.5 483 45.8
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.3e-114 416.4 516 45.3
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.3e-114 416.4 516 45.3
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 3.3e-114 416.4 478 45.2
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 3.3e-114 416.4 456 47.6
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 5.6e-114 415.6 479 45.9
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 7.3e-114 415.2 478 45.4
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 7.3e-114 415.2 532 43.0
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 9.6e-114 414.8 514 45.5
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 1.6e-113 414.1 513 43.7
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 2.1e-113 413.7 477 46.8
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 4.8e-113 412.5 503 45.5
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 1.1e-112 411.4 458 47.8
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.4e-112 411.0 507 45.2
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 2.4e-112 410.2 478 45.0
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 4.0e-112 409.5 520 42.9
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 2.9e-110 403.3 493 44.6
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 4.6e-108 396.0 477 44.7
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 1.8e-107 394.0 478 44.6
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 1.9e-106 390.6 454 44.7
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 1.9e-106 390.6 476 44.1
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.5e-106 390.2 457 47.3
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 4.8e-105 386.0 457 45.1
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 7.6e-103 378.6 583 38.3
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 1.1e-101 374.8 538 40.5
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 1.4e-96 357.8 453 43.7
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 7.4e-90 335.5 507 39.3
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 1.1e-88 331.6 384 45.3
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 2.6e-87 327.0 433 43.4
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 5.0e-86 322.8 389 45.0
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 4.2e-85 319.7 393 46.3
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 5.5e-85 319.3 501 39.5
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.1e-82 311.6 467 40.5
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 2.8e-81 307.0 476 41.2
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 4.7e-76 289.7 353 45.0
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 4.4e-66 256.5 279 47.3
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 9.7e-66 255.4 368 38.9
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 5.3e-64 249.6 402 39.3
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 3.5e-63 246.9 539 32.5
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 5.4e-56 223.0 303 42.6
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 5.4e-56 223.0 408 35.5
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 7.7e-55 219.2 498 31.9
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 8.8e-51 205.7 250 45.2
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 2.2e-49 201.1 471 32.1
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 1.5e-45 188.3 205 52.2
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 7.0e-40 169.5 416 32.5
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 4.3e-37 160.2 180 46.7
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 1.6e-36 158.3 172 48.8
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.2e-31 142.1 163 48.5
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 1.4e-27 128.6 326 29.1
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 1.9e-21 108.2 114 49.1
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 7.3e-21 106.3 93 57.0
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 6.2e-12 76.6 108 41.7
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 8.4e-09 66.2 44 72.7
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 2.1e-07 61.6 73 47.9
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 3.9e-06 57.4 38 63.2


User provided reference genes

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