Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0027s0184 Marchantia polymorpha HOM05D007035 ORTHO05D008774 6.9e-133 477.2 231 100.0
Pp3c1_37080 Physcomitrium patens HOM05D007035 ORTHO05D008774 3.1e-56 222.6 215 51.2
Ah.10g032510 Amaranthus hybridus HOM05D007035 ORTHO05D008774 2.4e-53 213.0 220 45.9
TAR628G1604 Trochodendron aralioides HOM05D007035 ORTHO05D008774 2.7e-52 209.5 218 47.2
Manes.02G111400 Manihot esculenta HOM05D007035 ORTHO05D008774 4.6e-52 208.8 217 50.2
Gorai.003G004700 Gossypium raimondii HOM05D007035 ORTHO05D008774 6.0e-52 208.4 213 47.9
Gohir.A02G175400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 3.0e-51 206.1 213 47.9
Gohir.D03G004400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 1.5e-50 203.8 213 46.9
Potri.005G105500 Populus trichocarpa HOM05D007035 ORTHO05D008774 1.5e-50 203.8 217 48.8
Thecc.01G009700 Theobroma cacao HOM05D007035 ORTHO05D008774 1.5e-50 203.8 213 46.9
THA.LOC104807437 Tarenaya hassleriana HOM05D007035 ORTHO05D008774 1.2e-49 200.7 214 47.7
EL10Ac9g22991 Beta vulgaris HOM05D007035 ORTHO05D008774 4.7e-49 198.7 214 44.9
CSS0018213 Camellia sinensis var. sinensis HOM05D007035 ORTHO05D008774 4.7e-49 198.7 214 46.3
SMO364G0252 Selaginella moellendorffii HOM05D007035 ORTHO05D008774 4.7e-49 198.7 175 53.7
Cfa015701 Carpinus fangiana HOM05D007035 ORTHO05D008774 6.2e-49 198.4 213 44.6
QL06p052348 Quercus lobata HOM05D007035 ORTHO05D008774 6.2e-49 198.4 213 45.5
CiPaw.07G005600 Carya illinoinensis HOM05D007035 ORTHO05D008774 1.1e-48 197.6 211 46.4
MD02G1242600 Malus domestica HOM05D007035 ORTHO05D008774 1.1e-48 197.6 214 46.3
Actinidia17600 Actinidia chinensis HOM05D007035 ORTHO05D008774 1.4e-48 197.2 216 46.3
Ca_03644_v3 Cicer arietinum L. HOM05D007035 ORTHO05D008774 1.4e-48 197.2 215 43.7
AL3G50680 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 1.8e-48 196.8 213 44.1
Rhsim08G0078500 Rhododendron simsii HOM05D007035 ORTHO05D008774 2.4e-48 196.4 214 44.4
Sp3g31080 Schrenkiella parvula HOM05D007035 ORTHO05D008774 2.4e-48 196.4 214 44.4
C03p58600 Brassica napus HOM05D007035 ORTHO05D008774 3.1e-48 196.1 215 43.3
Phvul.003G267600 Phaseolus vulgaris HOM05D007035 ORTHO05D008774 3.1e-48 196.1 215 43.3
Psat4g103040 Pisum sativum HOM05D007035 ORTHO05D008774 3.1e-48 196.1 215 44.2
CDE09G0622 Ceratophyllum demersum HOM05D007035 ORTHO05D008774 4.0e-48 195.7 219 43.8
AT2G17695 Arabidopsis thaliana HOM05D007035 ORTHO05D008774 5.2e-48 195.3 214 43.5
A06p33710 Brassica napus HOM05D007035 ORTHO05D008774 5.2e-48 195.3 215 42.8
Thhalv10022849m.g Eutrema salsugineum HOM05D007035 ORTHO05D008774 5.2e-48 195.3 215 44.7
CAN.G890.13 Capsicum annuum HOM05D007035 ORTHO05D008774 6.8e-48 194.9 214 46.3
PSO541G4772 Papaver somniferum HOM05D007035 ORTHO05D008774 6.8e-48 194.9 219 43.4
BraA06t26305Z Brassica rapa HOM05D007035 ORTHO05D008774 8.9e-48 194.5 215 43.3
PSO675G7652 Papaver somniferum HOM05D007035 ORTHO05D008774 8.9e-48 194.5 219 43.4
BcaB08g34751 Brassica carinata HOM05D007035 ORTHO05D008774 1.5e-47 193.7 215 43.7
Medtr8g074720 Medicago truncatula HOM05D007035 ORTHO05D008774 1.5e-47 193.7 215 43.7
DCAR_027629 Daucus carota HOM05D007035 ORTHO05D008774 2.0e-47 193.4 208 44.7
Lj4g0012539 Lotus japonicus HOM05D007035 ORTHO05D008774 2.0e-47 193.4 215 44.7
vmacro18445 Vaccinium macrocarpon HOM05D007035 ORTHO05D008774 2.6e-47 193.0 214 44.4
Carub.0003s3179 Capsella rubella HOM05D007035 ORTHO05D008774 3.4e-47 192.6 214 43.0
Hma1.2p1_0315F.1_g122740 Hydrangea macrophylla HOM05D007035 ORTHO05D008774 4.4e-47 192.2 209 45.9
Prupe.7G176600 Prunus persica HOM05D007035 ORTHO05D008774 5.8e-47 191.8 217 44.7
Atru.chr3.931 Acer truncatum HOM05D007035 ORTHO05D008774 9.9e-47 191.0 215 45.6
PGR102G2581 Punica granatum HOM05D007035 ORTHO05D008774 9.9e-47 191.0 217 44.2
MBI05_g35104_MAGBIO Magnolia biondii HOM05D007035 ORTHO05D008774 1.7e-46 190.3 215 45.1
Nitab4.5_0001696g0080 Nicotiana tabacum HOM05D007035 ORTHO05D008774 1.7e-46 190.3 214 44.9
TPR.G32013 Trifolium pratense HOM05D007035 ORTHO05D008774 1.7e-46 190.3 214 45.3
Zm00001eb241510 Zea mays HOM05D007035 ORTHO05D008774 1.7e-46 190.3 227 43.6
Nn6g31845 Nelumbo nucifera HOM05D007035 ORTHO05D008774 2.2e-46 189.9 214 43.5
BcaC01g02899 Brassica carinata HOM05D007035 ORTHO05D008774 2.9e-46 189.5 215 42.3
BolC3t18121H Brassica oleracea HOM05D007035 ORTHO05D008774 2.9e-46 189.5 215 42.3
FvH4_1g10900 Fragaria vesca HOM05D007035 ORTHO05D008774 2.9e-46 189.5 213 44.6
HPP92_014997 Vanilla planifolia HOM05D007035 ORTHO05D008774 2.9e-46 189.5 215 44.2
Migut.L00741 Erythranthe guttata HOM05D007035 ORTHO05D008774 3.8e-46 189.1 217 45.2
Eucgr.J02513 Eucalyptus grandis HOM05D007035 ORTHO05D008774 3.8e-46 189.1 213 46.0
FAN28G2890 Fragaria x ananassa HOM05D007035 ORTHO05D008774 3.8e-46 189.1 213 44.6
CANSAT25G1910 Cannabis sativa HOM05D007035 ORTHO05D008774 4.9e-46 188.7 214 45.3
FAN19G1923 Fragaria x ananassa HOM05D007035 ORTHO05D008774 4.9e-46 188.7 213 44.6
Sed0013381 Sechium edule HOM05D007035 ORTHO05D008774 4.9e-46 188.7 209 45.0
Lsat_1_v5_gn_2_75101 Lactuca sativa HOM05D007035 ORTHO05D008774 6.4e-46 188.3 215 45.6
PGSC0003DMG400001578 Solanum tuberosum HOM05D007035 ORTHO05D008774 6.4e-46 188.3 214 44.9
Ciclev10026505m.g Citrus clementina HOM05D007035 ORTHO05D008774 8.4e-46 188.0 210 47.1
Oeu008100.1 Olea europaea HOM05D007035 ORTHO05D008774 8.4e-46 188.0 215 45.1
HanXRQChr07g0192541 Helianthus annuus HOM05D007035 ORTHO05D008774 1.1e-45 187.6 216 43.5
Lalb_Chr05g0229721 Lupinus albus HOM05D007035 ORTHO05D008774 1.1e-45 187.6 215 43.3
ATR0661G057 Amborella trichopoda HOM05D007035 ORTHO05D008774 2.4e-45 186.4 210 45.7
ECA238G0027 Erigeron canadensis HOM05D007035 ORTHO05D008774 2.4e-45 186.4 193 48.2
Solyc02g083180.4 Solanum lycopersicum HOM05D007035 ORTHO05D008774 2.4e-45 186.4 214 44.4
Sopen02g027940 Solanum pennellii HOM05D007035 ORTHO05D008774 2.4e-45 186.4 214 44.4
FAN26G0170 Fragaria x ananassa HOM05D007035 ORTHO05D008774 3.2e-45 186.0 208 45.2
Hund08627 Selenicereus undatus HOM05D007035 ORTHO05D008774 3.2e-45 186.0 187 48.1
FAN23G2784 Fragaria x ananassa HOM05D007035 ORTHO05D008774 5.4e-45 185.3 213 44.1
GSVIVG01006258001 Vitis vinifera HOM05D007035 ORTHO05D008774 7.1e-45 184.9 218 43.6
SalBow5G2770 Salvia bowleyana HOM05D007035 ORTHO05D008774 9.2e-45 184.5 218 45.4
Lj4A228G16 Lonicera japonica HOM05D007035 ORTHO05D008774 1.2e-44 184.1 199 47.7
SGA_v2.0_scaffold229G43297 Striga asiatica HOM05D001343 ORTHO05D002008 1.6e-44 183.7 217 43.3
AUR62032933 Chenopodium quinoa HOM05D007035 ORTHO05D008774 2.7e-44 183.0 179 49.2
ClCG01G020680 Citrullus lanatus HOM05D007035 ORTHO05D008774 4.6e-44 182.2 209 43.1
Cc07_g12370 Coffea canephora HOM05D007035 ORTHO05D008774 7.8e-44 181.4 214 43.0
CsaV3_6G047600 Cucumis sativus L. HOM05D007035 ORTHO05D008774 1.0e-43 181.0 211 44.5
arahy.Tifrunner.gnm1.ann1.JN68AD Arachis hypogaea HOM05D007035 ORTHO05D008774 2.3e-43 179.9 215 40.5
arahy.Tifrunner.gnm1.ann1.Y2NACG Arachis hypogaea HOM05D007035 ORTHO05D008774 2.3e-43 179.9 215 40.5
MELO3C007951.2 Cucumis melo HOM05D007035 ORTHO05D008774 2.3e-43 179.9 208 43.8
TWI59G1021 Tripterygium wilfordii HOM05D007035 ORTHO05D008774 2.3e-43 179.9 213 42.7
VMungo0251G2208 Vigna mungo HOM05D007035 ORTHO05D008774 3.0e-43 179.5 199 43.7
Aa31LG8G14960 Aethionema arabicum HOM05D000088 ORTHO05D000933 1.1e-42 177.6 204 44.1
Os03g0107600 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 9.6e-42 174.5 226 42.0
Os04g0119300 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 9.6e-42 174.5 226 42.0
unitig_88.g27771 Utricularia gibba HOM05D007035 ORTHO05D008774 1.6e-41 173.7 210 42.4
Peaxi162Scf00300g00123 Petunia axillaris HOM05D007035 ORTHO05D008774 6.9e-40 168.3 190 45.8
COL.COLO4_22513 Corchorus olitorius HOM05D007035 ORTHO05D008774 4.4e-39 165.6 213 39.4
QL06p052340 Quercus lobata HOM05D007035 ORTHO05D008774 6.0e-36 155.2 175 44.6
AagrBONN_evm.TU.Sc2ySwM_117.3401 Anthoceros agrestis HOM05D007035 ORTHO05D008774 3.9e-35 152.5 158 46.2
Sc20g0005390 Simmondsia chinensis HOM05D007035 ORTHO05D008774 1.3e-33 147.5 168 45.8
MSTRG.15590 Avicennia marina HOM05D007035 ORTHO05D008774 3.6e-33 146.0 170 44.7
Glyma.16G120900 Glycine max HOM05D007035 ORTHO05D008774 1.1e-32 144.4 169 43.2
AUR62017739 Chenopodium quinoa HOM05D007035 ORTHO05D008774 1.3e-30 137.5 139 48.9
RcHm_v2.0_Chr2g0098161 Rosa chinensis HOM05D007035 ORTHO05D008774 1.3e-30 137.5 166 42.2
Cre17.g720550 Chlamydomonas reinhardtii HOM05D007035 ORTHO05D008774 2.9e-30 136.3 221 35.7
CBR_g48433 Chara braunii HOM05D007035 ORTHO05D008774 1.4e-29 134.0 277 28.2
SEGI_40855 Sequoiadendron giganteum HOM05D007035 ORTHO05D008774 4.2e-29 132.5 167 40.1
PRCOL_00002518 Prasinoderma coloniale HOM05D007035 ORTHO05D008774 7.1e-29 131.7 180 34.4
Cpa.g.sc6.337 Carica papaya HOM05D007035 ORTHO05D008774 9.3e-29 131.3 155 40.0
Dinv40155 Davidia involucrata HOM05D002155 ORTHO05D002215 1.6e-28 130.6 155 43.2
AL3G27500 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 2.1e-28 130.2 161 41.0
MCO10G322 Micromonas commoda HOM05D007035 ORTHO05D008774 1.0e-27 127.9 204 37.7
Aqoxy6G01870 Aquilegia oxysepala HOM05D007035 ORTHO05D008774 1.9e-26 123.6 158 39.2
CARHR107960 Cardamine hirsuta HOM05D007035 ORTHO05D008774 4.3e-26 122.5 140 43.6
Duzib147G1308 Durio zibethinus HOM05D007035 ORTHO05D008774 3.0e-19 99.8 150 33.3
Prupe.1G268600 Prunus persica HOM05D007035 ORTHO05D008774 1.4e-16 90.9 96 42.7
Prupe.6G001100 Prunus persica HOM05D007035 ORTHO05D008774 5.3e-16 89.0 96 41.7
Eucgr.J01132 Eucalyptus grandis HOM05D007035 ORTHO05D008774 4.2e-13 79.3 159 30.8
Cpa.g.sc6.336 Carica papaya HOM05D007035 ORTHO05D008774 8.7e-11 71.6 54 66.7
Peaxi162Scf00300g00119 Petunia axillaris HOM05D007035 ORTHO05D008774 1.8e-08 63.9 61 52.5
CBR_g30366 Chara braunii HOM05D007035 ORTHO05D008774 1.0e-06 58.2 63 39.7


User provided reference genes

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